Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS09105 and LU632_RS09110 are separated by 56 nucleotides LU632_RS09110 and LU632_RS09115 are separated by 22 nucleotides LU632_RS09115 and LU632_RS09120 are separated by 22 nucleotides
LU632_RS09105: LU632_RS09105 - fimbrial protein, at 1,712,748 to 1,713,347
_RS09105
LU632_RS09110: LU632_RS09110 - molecular chaperone, at 1,713,404 to 1,714,144
_RS09110
LU632_RS09115: LU632_RS09115 - fimbrial biogenesis outer membrane usher protein, at 1,714,167 to 1,716,689
_RS09115
LU632_RS09120: LU632_RS09120 - fimbrial protein, at 1,716,712 to 1,717,761
_RS09120
Position (kb) 1714
1715
1716
1717 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1713.221 kb on - strand, within LU632_RS09105 at 1713.228 kb on + strand, within LU632_RS09105 at 1713.229 kb on - strand, within LU632_RS09105 at 1713.251 kb on + strand, within LU632_RS09105 at 1713.271 kb on - strand, within LU632_RS09105 at 1713.273 kb on + strand, within LU632_RS09105 at 1713.274 kb on - strand, within LU632_RS09105 at 1713.274 kb on - strand, within LU632_RS09105 at 1713.276 kb on - strand, within LU632_RS09105 at 1713.279 kb on + strand, within LU632_RS09105 at 1713.280 kb on - strand, within LU632_RS09105 at 1713.280 kb on - strand, within LU632_RS09105 at 1713.336 kb on - strand at 1713.340 kb on - strand at 1713.385 kb on - strand at 1713.567 kb on + strand, within LU632_RS09110 at 1713.782 kb on + strand, within LU632_RS09110 at 1713.783 kb on - strand, within LU632_RS09110 at 1713.902 kb on - strand, within LU632_RS09110 at 1713.995 kb on - strand, within LU632_RS09110 at 1714.316 kb on + strand at 1714.347 kb on + strand at 1714.347 kb on + strand at 1714.348 kb on - strand at 1714.348 kb on - strand at 1714.348 kb on - strand at 1714.348 kb on - strand at 1714.362 kb on + strand at 1714.362 kb on + strand at 1714.362 kb on + strand at 1714.362 kb on + strand at 1714.362 kb on + strand at 1714.363 kb on - strand at 1714.363 kb on - strand at 1714.415 kb on + strand at 1714.415 kb on + strand at 1714.416 kb on - strand at 1714.546 kb on + strand, within LU632_RS09115 at 1714.550 kb on - strand, within LU632_RS09115 at 1714.578 kb on + strand, within LU632_RS09115 at 1714.578 kb on + strand, within LU632_RS09115 at 1714.578 kb on + strand, within LU632_RS09115 at 1714.578 kb on + strand, within LU632_RS09115 at 1714.579 kb on - strand, within LU632_RS09115 at 1714.579 kb on - strand, within LU632_RS09115 at 1714.579 kb on - strand, within LU632_RS09115 at 1714.579 kb on - strand, within LU632_RS09115 at 1714.584 kb on - strand, within LU632_RS09115 at 1714.644 kb on + strand, within LU632_RS09115 at 1714.644 kb on + strand, within LU632_RS09115 at 1714.645 kb on - strand, within LU632_RS09115 at 1714.645 kb on - strand, within LU632_RS09115 at 1714.646 kb on + strand, within LU632_RS09115 at 1714.646 kb on + strand, within LU632_RS09115 at 1714.646 kb on + strand, within LU632_RS09115 at 1714.649 kb on + strand, within LU632_RS09115 at 1714.653 kb on + strand, within LU632_RS09115 at 1714.653 kb on + strand, within LU632_RS09115 at 1714.654 kb on - strand, within LU632_RS09115 at 1714.666 kb on - strand, within LU632_RS09115 at 1714.794 kb on - strand, within LU632_RS09115 at 1714.811 kb on + strand, within LU632_RS09115 at 1714.822 kb on - strand, within LU632_RS09115 at 1714.823 kb on + strand, within LU632_RS09115 at 1714.918 kb on + strand, within LU632_RS09115 at 1714.965 kb on + strand, within LU632_RS09115 at 1714.965 kb on + strand, within LU632_RS09115 at 1714.965 kb on + strand, within LU632_RS09115 at 1714.966 kb on - strand, within LU632_RS09115 at 1714.966 kb on - strand, within LU632_RS09115 at 1714.967 kb on + strand, within LU632_RS09115 at 1714.967 kb on + strand, within LU632_RS09115 at 1715.028 kb on - strand, within LU632_RS09115 at 1715.037 kb on + strand, within LU632_RS09115 at 1715.046 kb on - strand, within LU632_RS09115 at 1715.080 kb on + strand, within LU632_RS09115 at 1715.161 kb on - strand, within LU632_RS09115 at 1715.286 kb on - strand, within LU632_RS09115 at 1715.289 kb on - strand, within LU632_RS09115 at 1715.289 kb on - strand, within LU632_RS09115 at 1715.289 kb on - strand, within LU632_RS09115 at 1715.293 kb on - strand, within LU632_RS09115 at 1715.360 kb on + strand, within LU632_RS09115 at 1715.361 kb on - strand, within LU632_RS09115 at 1715.486 kb on + strand, within LU632_RS09115 at 1715.508 kb on + strand, within LU632_RS09115 at 1715.526 kb on + strand, within LU632_RS09115 at 1715.526 kb on + strand, within LU632_RS09115 at 1715.686 kb on - strand, within LU632_RS09115 at 1715.782 kb on - strand, within LU632_RS09115 at 1715.856 kb on + strand, within LU632_RS09115 at 1715.858 kb on - strand, within LU632_RS09115 at 1715.955 kb on + strand, within LU632_RS09115 at 1715.956 kb on - strand, within LU632_RS09115 at 1715.956 kb on - strand, within LU632_RS09115 at 1715.956 kb on - strand, within LU632_RS09115 at 1715.956 kb on - strand, within LU632_RS09115 at 1715.956 kb on - strand, within LU632_RS09115 at 1715.956 kb on - strand, within LU632_RS09115 at 1716.003 kb on + strand, within LU632_RS09115 at 1716.003 kb on + strand, within LU632_RS09115 at 1716.004 kb on - strand, within LU632_RS09115 at 1716.004 kb on - strand, within LU632_RS09115 at 1716.015 kb on + strand, within LU632_RS09115 at 1716.016 kb on - strand, within LU632_RS09115 at 1716.078 kb on + strand, within LU632_RS09115 at 1716.197 kb on + strand, within LU632_RS09115 at 1716.197 kb on + strand, within LU632_RS09115 at 1716.198 kb on - strand, within LU632_RS09115 at 1716.309 kb on - strand, within LU632_RS09115 at 1716.412 kb on - strand, within LU632_RS09115 at 1716.550 kb on + strand at 1716.550 kb on + strand at 1716.550 kb on + strand at 1716.550 kb on + strand at 1716.550 kb on + strand at 1716.550 kb on + strand at 1716.551 kb on - strand at 1716.551 kb on - strand at 1716.551 kb on - strand at 1716.551 kb on - strand at 1716.552 kb on + strand at 1716.552 kb on + strand at 1716.552 kb on + strand at 1716.552 kb on + strand at 1716.552 kb on + strand at 1716.552 kb on + strand at 1716.552 kb on + strand at 1716.553 kb on - strand at 1716.554 kb on + strand at 1716.554 kb on + strand at 1716.554 kb on + strand at 1716.554 kb on + strand at 1716.555 kb on - strand at 1716.555 kb on - strand at 1716.615 kb on - strand at 1716.681 kb on + strand at 1716.707 kb on + strand at 1716.721 kb on - strand at 1716.731 kb on + strand at 1716.733 kb on + strand at 1716.733 kb on + strand at 1716.733 kb on + strand at 1716.733 kb on + strand at 1716.734 kb on + strand at 1716.734 kb on - strand at 1716.734 kb on - strand at 1716.738 kb on + strand at 1716.738 kb on + strand at 1716.738 kb on + strand at 1716.739 kb on - strand at 1716.739 kb on - strand at 1716.739 kb on - strand at 1716.739 kb on - strand at 1716.935 kb on - strand, within LU632_RS09120 at 1717.014 kb on + strand, within LU632_RS09120 at 1717.021 kb on + strand, within LU632_RS09120 at 1717.021 kb on + strand, within LU632_RS09120 at 1717.023 kb on + strand, within LU632_RS09120 at 1717.024 kb on - strand, within LU632_RS09120 at 1717.024 kb on - strand, within LU632_RS09120 at 1717.039 kb on + strand, within LU632_RS09120 at 1717.081 kb on + strand, within LU632_RS09120 at 1717.081 kb on + strand, within LU632_RS09120 at 1717.081 kb on + strand, within LU632_RS09120 at 1717.082 kb on - strand, within LU632_RS09120 at 1717.082 kb on - strand, within LU632_RS09120 at 1717.135 kb on + strand, within LU632_RS09120 at 1717.135 kb on + strand, within LU632_RS09120 at 1717.135 kb on + strand, within LU632_RS09120 at 1717.136 kb on - strand, within LU632_RS09120 at 1717.138 kb on + strand, within LU632_RS09120 at 1717.138 kb on + strand, within LU632_RS09120 at 1717.138 kb on + strand, within LU632_RS09120 at 1717.139 kb on - strand, within LU632_RS09120 at 1717.139 kb on - strand, within LU632_RS09120 at 1717.143 kb on + strand, within LU632_RS09120 at 1717.143 kb on + strand, within LU632_RS09120 at 1717.143 kb on + strand, within LU632_RS09120 at 1717.144 kb on - strand, within LU632_RS09120 at 1717.144 kb on - strand, within LU632_RS09120 at 1717.181 kb on + strand, within LU632_RS09120 at 1717.181 kb on + strand, within LU632_RS09120 at 1717.184 kb on + strand, within LU632_RS09120 at 1717.184 kb on + strand, within LU632_RS09120 at 1717.184 kb on + strand, within LU632_RS09120 at 1717.184 kb on + strand, within LU632_RS09120 at 1717.185 kb on - strand, within LU632_RS09120 at 1717.185 kb on - strand, within LU632_RS09120 at 1717.185 kb on - strand, within LU632_RS09120 at 1717.185 kb on - strand, within LU632_RS09120 at 1717.185 kb on - strand, within LU632_RS09120 at 1717.277 kb on - strand, within LU632_RS09120 at 1717.277 kb on - strand, within LU632_RS09120 at 1717.308 kb on + strand, within LU632_RS09120 at 1717.308 kb on + strand, within LU632_RS09120 at 1717.467 kb on - strand, within LU632_RS09120 at 1717.510 kb on + strand, within LU632_RS09120 at 1717.510 kb on + strand, within LU632_RS09120 at 1717.511 kb on - strand, within LU632_RS09120 at 1717.511 kb on - strand, within LU632_RS09120 at 1717.511 kb on - strand, within LU632_RS09120 at 1717.512 kb on + strand, within LU632_RS09120 at 1717.512 kb on + strand, within LU632_RS09120 at 1717.513 kb on - strand, within LU632_RS09120
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 1,713,221 - LU632_RS09105 0.79 -0.3 1,713,228 + LU632_RS09105 0.80 -0.6 1,713,229 - LU632_RS09105 0.80 -1.1 1,713,251 + LU632_RS09105 0.84 -0.5 1,713,271 - LU632_RS09105 0.87 +0.3 1,713,273 + LU632_RS09105 0.88 -0.5 1,713,274 - LU632_RS09105 0.88 -0.6 1,713,274 - LU632_RS09105 0.88 -0.1 1,713,276 - LU632_RS09105 0.88 -0.2 1,713,279 + LU632_RS09105 0.89 -0.3 1,713,280 - LU632_RS09105 0.89 +1.2 1,713,280 - LU632_RS09105 0.89 +0.8 1,713,336 - -0.1 1,713,340 - +0.3 1,713,385 - -0.1 1,713,567 + LU632_RS09110 0.22 -1.1 1,713,782 + LU632_RS09110 0.51 -1.3 1,713,783 - LU632_RS09110 0.51 +0.6 1,713,902 - LU632_RS09110 0.67 -0.1 1,713,995 - LU632_RS09110 0.80 -0.6 1,714,316 + -1.6 1,714,347 + +0.5 1,714,347 + +1.0 1,714,348 - +0.6 1,714,348 - -0.6 1,714,348 - -0.2 1,714,348 - -0.5 1,714,362 + +0.5 1,714,362 + -0.3 1,714,362 + -0.7 1,714,362 + -0.7 1,714,362 + -0.5 1,714,363 - +0.4 1,714,363 - -0.1 1,714,415 + +0.3 1,714,415 + +0.5 1,714,416 - -0.5 1,714,546 + LU632_RS09115 0.15 +0.3 1,714,550 - LU632_RS09115 0.15 -0.3 1,714,578 + LU632_RS09115 0.16 -0.4 1,714,578 + LU632_RS09115 0.16 -0.4 1,714,578 + LU632_RS09115 0.16 -0.4 1,714,578 + LU632_RS09115 0.16 -0.3 1,714,579 - LU632_RS09115 0.16 -0.3 1,714,579 - LU632_RS09115 0.16 -1.9 1,714,579 - LU632_RS09115 0.16 -0.3 1,714,579 - LU632_RS09115 0.16 +1.5 1,714,584 - LU632_RS09115 0.17 -0.4 1,714,644 + LU632_RS09115 0.19 -0.7 1,714,644 + LU632_RS09115 0.19 -0.3 1,714,645 - LU632_RS09115 0.19 +0.6 1,714,645 - LU632_RS09115 0.19 +0.2 1,714,646 + LU632_RS09115 0.19 -0.3 1,714,646 + LU632_RS09115 0.19 -0.1 1,714,646 + LU632_RS09115 0.19 -0.1 1,714,649 + LU632_RS09115 0.19 +0.1 1,714,653 + LU632_RS09115 0.19 +0.0 1,714,653 + LU632_RS09115 0.19 +0.1 1,714,654 - LU632_RS09115 0.19 +1.0 1,714,666 - LU632_RS09115 0.20 +0.5 1,714,794 - LU632_RS09115 0.25 +3.0 1,714,811 + LU632_RS09115 0.26 +1.6 1,714,822 - LU632_RS09115 0.26 -0.1 1,714,823 + LU632_RS09115 0.26 -0.9 1,714,918 + LU632_RS09115 0.30 -0.1 1,714,965 + LU632_RS09115 0.32 -0.5 1,714,965 + LU632_RS09115 0.32 +0.2 1,714,965 + LU632_RS09115 0.32 -0.9 1,714,966 - LU632_RS09115 0.32 +0.8 1,714,966 - LU632_RS09115 0.32 -0.1 1,714,967 + LU632_RS09115 0.32 -0.5 1,714,967 + LU632_RS09115 0.32 +0.7 1,715,028 - LU632_RS09115 0.34 +0.4 1,715,037 + LU632_RS09115 0.34 -0.3 1,715,046 - LU632_RS09115 0.35 -0.3 1,715,080 + LU632_RS09115 0.36 +0.0 1,715,161 - LU632_RS09115 0.39 -0.6 1,715,286 - LU632_RS09115 0.44 +0.0 1,715,289 - LU632_RS09115 0.44 +0.5 1,715,289 - LU632_RS09115 0.44 +0.3 1,715,289 - LU632_RS09115 0.44 +0.1 1,715,293 - LU632_RS09115 0.45 +0.1 1,715,360 + LU632_RS09115 0.47 -0.4 1,715,361 - LU632_RS09115 0.47 +0.4 1,715,486 + LU632_RS09115 0.52 +1.4 1,715,508 + LU632_RS09115 0.53 +0.1 1,715,526 + LU632_RS09115 0.54 -0.5 1,715,526 + LU632_RS09115 0.54 -0.0 1,715,686 - LU632_RS09115 0.60 +0.0 1,715,782 - LU632_RS09115 0.64 +0.4 1,715,856 + LU632_RS09115 0.67 +0.3 1,715,858 - LU632_RS09115 0.67 -0.7 1,715,955 + LU632_RS09115 0.71 -0.4 1,715,956 - LU632_RS09115 0.71 +0.0 1,715,956 - LU632_RS09115 0.71 -0.4 1,715,956 - LU632_RS09115 0.71 -1.6 1,715,956 - LU632_RS09115 0.71 +0.6 1,715,956 - LU632_RS09115 0.71 +0.3 1,715,956 - LU632_RS09115 0.71 +0.4 1,716,003 + LU632_RS09115 0.73 -0.1 1,716,003 + LU632_RS09115 0.73 -0.4 1,716,004 - LU632_RS09115 0.73 +0.1 1,716,004 - LU632_RS09115 0.73 +1.6 1,716,015 + LU632_RS09115 0.73 -0.3 1,716,016 - LU632_RS09115 0.73 -0.1 1,716,078 + LU632_RS09115 0.76 -0.3 1,716,197 + LU632_RS09115 0.80 +0.6 1,716,197 + LU632_RS09115 0.80 -0.6 1,716,198 - LU632_RS09115 0.80 -0.1 1,716,309 - LU632_RS09115 0.85 -0.0 1,716,412 - LU632_RS09115 0.89 +0.2 1,716,550 + -0.7 1,716,550 + +1.4 1,716,550 + +0.3 1,716,550 + +0.1 1,716,550 + -0.6 1,716,550 + -0.4 1,716,551 - -0.3 1,716,551 - +1.3 1,716,551 - -0.9 1,716,551 - +0.1 1,716,552 + +0.2 1,716,552 + -0.6 1,716,552 + -0.4 1,716,552 + -0.1 1,716,552 + -0.4 1,716,552 + -0.2 1,716,552 + +0.6 1,716,553 - -0.3 1,716,554 + +0.3 1,716,554 + -0.2 1,716,554 + +0.1 1,716,554 + +0.3 1,716,555 - +1.0 1,716,555 - -1.2 1,716,615 - +0.6 1,716,681 + +0.6 1,716,707 + +0.4 1,716,721 - -0.3 1,716,731 + +0.3 1,716,733 + +1.0 1,716,733 + -0.3 1,716,733 + -0.3 1,716,733 + -0.5 1,716,734 + +1.4 1,716,734 - -0.3 1,716,734 - +0.8 1,716,738 + +0.8 1,716,738 + -0.9 1,716,738 + +0.3 1,716,739 - -0.5 1,716,739 - -0.6 1,716,739 - +0.2 1,716,739 - -1.4 1,716,935 - LU632_RS09120 0.21 +0.4 1,717,014 + LU632_RS09120 0.29 -0.3 1,717,021 + LU632_RS09120 0.29 +0.4 1,717,021 + LU632_RS09120 0.29 +0.0 1,717,023 + LU632_RS09120 0.30 +0.2 1,717,024 - LU632_RS09120 0.30 +0.2 1,717,024 - LU632_RS09120 0.30 -0.3 1,717,039 + LU632_RS09120 0.31 -0.1 1,717,081 + LU632_RS09120 0.35 +0.4 1,717,081 + LU632_RS09120 0.35 +0.8 1,717,081 + LU632_RS09120 0.35 +0.2 1,717,082 - LU632_RS09120 0.35 +0.3 1,717,082 - LU632_RS09120 0.35 -0.2 1,717,135 + LU632_RS09120 0.40 +0.5 1,717,135 + LU632_RS09120 0.40 -0.3 1,717,135 + LU632_RS09120 0.40 +0.0 1,717,136 - LU632_RS09120 0.40 -0.6 1,717,138 + LU632_RS09120 0.41 +0.2 1,717,138 + LU632_RS09120 0.41 +1.0 1,717,138 + LU632_RS09120 0.41 +0.4 1,717,139 - LU632_RS09120 0.41 +0.0 1,717,139 - LU632_RS09120 0.41 -0.0 1,717,143 + LU632_RS09120 0.41 +1.3 1,717,143 + LU632_RS09120 0.41 +0.1 1,717,143 + LU632_RS09120 0.41 -0.1 1,717,144 - LU632_RS09120 0.41 -0.1 1,717,144 - LU632_RS09120 0.41 +1.6 1,717,181 + LU632_RS09120 0.45 -0.4 1,717,181 + LU632_RS09120 0.45 +0.4 1,717,184 + LU632_RS09120 0.45 -1.1 1,717,184 + LU632_RS09120 0.45 +1.2 1,717,184 + LU632_RS09120 0.45 +0.4 1,717,184 + LU632_RS09120 0.45 -0.3 1,717,185 - LU632_RS09120 0.45 +1.0 1,717,185 - LU632_RS09120 0.45 -0.0 1,717,185 - LU632_RS09120 0.45 -0.6 1,717,185 - LU632_RS09120 0.45 +1.0 1,717,185 - LU632_RS09120 0.45 +0.8 1,717,277 - LU632_RS09120 0.54 +0.8 1,717,277 - LU632_RS09120 0.54 -0.9 1,717,308 + LU632_RS09120 0.57 -0.1 1,717,308 + LU632_RS09120 0.57 +1.0 1,717,467 - LU632_RS09120 0.72 +0.2 1,717,510 + LU632_RS09120 0.76 -0.6 1,717,510 + LU632_RS09120 0.76 -0.1 1,717,511 - LU632_RS09120 0.76 +0.0 1,717,511 - LU632_RS09120 0.76 -0.2 1,717,511 - LU632_RS09120 0.76 +1.0 1,717,512 + LU632_RS09120 0.76 -0.7 1,717,512 + LU632_RS09120 0.76 -0.2 1,717,513 - LU632_RS09120 0.76 +0.0
Or see this region's nucleotide sequence