Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08505

Experiment: HBM-CucXylem

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS08500 and folE are separated by 416 nucleotidesfolE and LU632_RS08510 are separated by 8 nucleotides LU632_RS08495: LU632_RS08495 - DNA cytosine methyltransferase, at 1,594,303 to 1,594,803 _RS08495 LU632_RS08500: LU632_RS08500 - transposase, at 1,594,769 to 1,595,367 _RS08500 LU632_RS08505: folE - GTP cyclohydrolase I FolE, at 1,595,784 to 1,596,449 folE LU632_RS08510: LU632_RS08510 - DUF418 family protein, at 1,596,458 to 1,597,612 _RS08510 Position (kb) 1595 1596 1597Strain fitness (log2 ratio) -2 -1 0 1at 1594.986 kb on + strand, within LU632_RS08500at 1595.046 kb on - strand, within LU632_RS08500at 1595.427 kb on + strandat 1595.427 kb on + strandat 1595.431 kb on + strandat 1595.431 kb on + strandat 1595.462 kb on - strandat 1595.469 kb on + strandat 1595.469 kb on + strandat 1595.470 kb on - strandat 1595.470 kb on - strandat 1595.553 kb on + strandat 1595.554 kb on - strandat 1595.623 kb on - strandat 1595.677 kb on + strandat 1596.467 kb on - strandat 1596.511 kb on - strandat 1596.520 kb on + strandat 1596.520 kb on + strandat 1596.524 kb on - strandat 1596.675 kb on + strand, within LU632_RS08510at 1596.676 kb on - strand, within LU632_RS08510at 1596.745 kb on + strand, within LU632_RS08510at 1596.789 kb on - strand, within LU632_RS08510at 1596.873 kb on - strand, within LU632_RS08510at 1596.873 kb on - strand, within LU632_RS08510at 1597.027 kb on + strand, within LU632_RS08510at 1597.027 kb on + strand, within LU632_RS08510at 1597.027 kb on + strand, within LU632_RS08510at 1597.027 kb on + strand, within LU632_RS08510at 1597.027 kb on + strand, within LU632_RS08510at 1597.027 kb on + strand, within LU632_RS08510at 1597.028 kb on - strand, within LU632_RS08510at 1597.028 kb on - strand, within LU632_RS08510at 1597.028 kb on - strand, within LU632_RS08510at 1597.028 kb on - strand, within LU632_RS08510at 1597.028 kb on - strand, within LU632_RS08510at 1597.028 kb on - strand, within LU632_RS08510at 1597.028 kb on - strand, within LU632_RS08510at 1597.168 kb on + strand, within LU632_RS08510at 1597.169 kb on - strand, within LU632_RS08510at 1597.387 kb on + strand, within LU632_RS08510at 1597.387 kb on + strand, within LU632_RS08510at 1597.387 kb on + strand, within LU632_RS08510at 1597.387 kb on + strand, within LU632_RS08510at 1597.388 kb on - strand, within LU632_RS08510at 1597.388 kb on - strand, within LU632_RS08510at 1597.391 kb on + strand, within LU632_RS08510at 1597.391 kb on + strand, within LU632_RS08510at 1597.391 kb on + strand, within LU632_RS08510at 1597.391 kb on + strand, within LU632_RS08510at 1597.392 kb on - strand, within LU632_RS08510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
remove
1,594,986 + LU632_RS08500 0.36 +0.7
1,595,046 - LU632_RS08500 0.46 +0.1
1,595,427 + +0.4
1,595,427 + +0.1
1,595,431 + -1.2
1,595,431 + -0.5
1,595,462 - -0.3
1,595,469 + +0.7
1,595,469 + +0.3
1,595,470 - -0.1
1,595,470 - -0.5
1,595,553 + -1.1
1,595,554 - +0.6
1,595,623 - +0.3
1,595,677 + +0.9
1,596,467 - -0.0
1,596,511 - +1.5
1,596,520 + -0.5
1,596,520 + -0.9
1,596,524 - +0.1
1,596,675 + LU632_RS08510 0.19 -0.3
1,596,676 - LU632_RS08510 0.19 -0.1
1,596,745 + LU632_RS08510 0.25 -0.1
1,596,789 - LU632_RS08510 0.29 -0.6
1,596,873 - LU632_RS08510 0.36 -1.1
1,596,873 - LU632_RS08510 0.36 +1.3
1,597,027 + LU632_RS08510 0.49 +0.9
1,597,027 + LU632_RS08510 0.49 +0.4
1,597,027 + LU632_RS08510 0.49 +1.3
1,597,027 + LU632_RS08510 0.49 -1.2
1,597,027 + LU632_RS08510 0.49 -0.3
1,597,027 + LU632_RS08510 0.49 -2.4
1,597,028 - LU632_RS08510 0.49 +1.1
1,597,028 - LU632_RS08510 0.49 -0.3
1,597,028 - LU632_RS08510 0.49 +0.7
1,597,028 - LU632_RS08510 0.49 +0.1
1,597,028 - LU632_RS08510 0.49 -0.7
1,597,028 - LU632_RS08510 0.49 +0.2
1,597,028 - LU632_RS08510 0.49 +1.1
1,597,168 + LU632_RS08510 0.61 +1.1
1,597,169 - LU632_RS08510 0.62 -0.0
1,597,387 + LU632_RS08510 0.80 +0.3
1,597,387 + LU632_RS08510 0.80 -0.2
1,597,387 + LU632_RS08510 0.80 +0.1
1,597,387 + LU632_RS08510 0.80 +0.1
1,597,388 - LU632_RS08510 0.81 -0.2
1,597,388 - LU632_RS08510 0.81 +1.3
1,597,391 + LU632_RS08510 0.81 +0.5
1,597,391 + LU632_RS08510 0.81 +0.2
1,597,391 + LU632_RS08510 0.81 -0.7
1,597,391 + LU632_RS08510 0.81 -0.3
1,597,392 - LU632_RS08510 0.81 -0.5

Or see this region's nucleotide sequence