Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlmD and relA are separated by 13 nucleotides relA and LU632_RS06355 overlap by 20 nucleotides LU632_RS06355 and mazG are separated by 2 nucleotides
LU632_RS06345: rlmD - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 1,218,219 to 1,219,556
rlmD
LU632_RS06350: relA - GTP diphosphokinase, at 1,219,570 to 1,221,798
relA
LU632_RS06355: LU632_RS06355 - hypothetical protein, at 1,221,779 to 1,221,997
_RS06355
LU632_RS06360: mazG - nucleoside triphosphate pyrophosphohydrolase, at 1,222,000 to 1,222,782
mazG
Position (kb) 1219
1220
1221
1222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1218.584 kb on - strand, within rlmD at 1218.590 kb on + strand, within rlmD at 1218.590 kb on + strand, within rlmD at 1218.590 kb on + strand, within rlmD at 1218.591 kb on - strand, within rlmD at 1218.591 kb on - strand, within rlmD at 1218.642 kb on + strand, within rlmD at 1218.642 kb on + strand, within rlmD at 1218.642 kb on + strand, within rlmD at 1218.716 kb on + strand, within rlmD at 1218.716 kb on + strand, within rlmD at 1218.717 kb on - strand, within rlmD at 1218.746 kb on + strand, within rlmD at 1218.746 kb on + strand, within rlmD at 1218.746 kb on + strand, within rlmD at 1218.754 kb on + strand, within rlmD at 1218.834 kb on - strand, within rlmD at 1218.914 kb on + strand, within rlmD at 1218.955 kb on + strand, within rlmD at 1219.029 kb on - strand, within rlmD at 1219.079 kb on - strand, within rlmD at 1219.089 kb on - strand, within rlmD at 1219.111 kb on + strand, within rlmD at 1219.140 kb on - strand, within rlmD at 1219.194 kb on - strand, within rlmD at 1219.198 kb on + strand, within rlmD at 1219.233 kb on - strand, within rlmD at 1219.242 kb on - strand, within rlmD at 1219.263 kb on - strand, within rlmD at 1219.280 kb on - strand, within rlmD at 1219.364 kb on + strand, within rlmD at 1219.364 kb on + strand, within rlmD at 1219.364 kb on + strand, within rlmD at 1219.365 kb on - strand, within rlmD at 1219.365 kb on - strand, within rlmD at 1219.396 kb on - strand, within rlmD at 1219.407 kb on - strand, within rlmD at 1219.416 kb on - strand, within rlmD at 1219.484 kb on + strand at 1219.485 kb on - strand at 1219.485 kb on - strand at 1219.485 kb on - strand at 1219.523 kb on - strand at 1219.526 kb on + strand at 1219.925 kb on + strand, within relA at 1219.981 kb on - strand, within relA at 1219.981 kb on - strand, within relA at 1220.037 kb on + strand, within relA at 1220.037 kb on + strand, within relA at 1220.038 kb on - strand, within relA at 1220.038 kb on - strand, within relA at 1220.110 kb on - strand, within relA at 1220.110 kb on - strand, within relA at 1220.110 kb on - strand, within relA at 1220.110 kb on - strand, within relA at 1220.114 kb on - strand, within relA at 1220.114 kb on - strand, within relA at 1220.182 kb on + strand, within relA at 1220.200 kb on + strand, within relA at 1220.201 kb on - strand, within relA at 1220.201 kb on - strand, within relA at 1220.203 kb on - strand, within relA at 1220.203 kb on - strand, within relA at 1220.203 kb on - strand, within relA at 1220.251 kb on + strand, within relA at 1220.251 kb on + strand, within relA at 1220.252 kb on - strand, within relA at 1220.252 kb on - strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.335 kb on - strand, within relA at 1220.339 kb on - strand, within relA at 1220.339 kb on - strand, within relA at 1220.396 kb on + strand, within relA at 1220.396 kb on + strand, within relA at 1220.396 kb on + strand, within relA at 1220.397 kb on - strand, within relA at 1220.497 kb on + strand, within relA at 1220.497 kb on + strand, within relA at 1220.497 kb on + strand, within relA at 1220.497 kb on + strand, within relA at 1220.498 kb on - strand, within relA at 1220.498 kb on - strand, within relA at 1220.498 kb on - strand, within relA at 1220.498 kb on - strand, within relA at 1220.498 kb on - strand, within relA at 1220.546 kb on + strand, within relA at 1220.556 kb on + strand, within relA at 1220.638 kb on + strand, within relA at 1220.640 kb on + strand, within relA at 1220.641 kb on - strand, within relA at 1220.716 kb on - strand, within relA at 1220.865 kb on + strand, within relA at 1220.928 kb on + strand, within relA at 1220.933 kb on - strand, within relA at 1220.940 kb on - strand, within relA at 1220.964 kb on + strand, within relA at 1221.136 kb on - strand, within relA at 1221.175 kb on + strand, within relA at 1221.465 kb on + strand, within relA at 1221.651 kb on - strand at 1221.702 kb on + strand at 1221.718 kb on + strand at 1221.718 kb on + strand at 1221.819 kb on + strand, within LU632_RS06355 at 1221.907 kb on - strand, within LU632_RS06355 at 1221.956 kb on + strand, within LU632_RS06355 at 1221.957 kb on - strand, within LU632_RS06355 at 1221.961 kb on + strand, within LU632_RS06355 at 1222.084 kb on + strand, within mazG at 1222.084 kb on + strand, within mazG at 1222.085 kb on - strand, within mazG at 1222.085 kb on - strand, within mazG at 1222.187 kb on + strand, within mazG at 1222.188 kb on - strand, within mazG at 1222.204 kb on + strand, within mazG at 1222.213 kb on - strand, within mazG at 1222.236 kb on + strand, within mazG at 1222.255 kb on - strand, within mazG at 1222.293 kb on + strand, within mazG at 1222.294 kb on - strand, within mazG at 1222.403 kb on + strand, within mazG at 1222.403 kb on + strand, within mazG at 1222.404 kb on - strand, within mazG at 1222.404 kb on - strand, within mazG at 1222.410 kb on + strand, within mazG at 1222.508 kb on - strand, within mazG at 1222.508 kb on - strand, within mazG at 1222.627 kb on - strand, within mazG at 1222.627 kb on - strand, within mazG at 1222.630 kb on - strand, within mazG at 1222.781 kb on - strand at 1222.781 kb on - strand at 1222.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 1,218,584 - rlmD LU632_RS06345 0.27 +2.7 1,218,590 + rlmD LU632_RS06345 0.28 -1.2 1,218,590 + rlmD LU632_RS06345 0.28 -0.3 1,218,590 + rlmD LU632_RS06345 0.28 -0.3 1,218,591 - rlmD LU632_RS06345 0.28 +0.2 1,218,591 - rlmD LU632_RS06345 0.28 +0.6 1,218,642 + rlmD LU632_RS06345 0.32 +0.1 1,218,642 + rlmD LU632_RS06345 0.32 -0.2 1,218,642 + rlmD LU632_RS06345 0.32 -0.9 1,218,716 + rlmD LU632_RS06345 0.37 -1.4 1,218,716 + rlmD LU632_RS06345 0.37 +0.4 1,218,717 - rlmD LU632_RS06345 0.37 -0.1 1,218,746 + rlmD LU632_RS06345 0.39 +1.2 1,218,746 + rlmD LU632_RS06345 0.39 -0.3 1,218,746 + rlmD LU632_RS06345 0.39 -0.5 1,218,754 + rlmD LU632_RS06345 0.40 -1.0 1,218,834 - rlmD LU632_RS06345 0.46 +0.2 1,218,914 + rlmD LU632_RS06345 0.52 -0.4 1,218,955 + rlmD LU632_RS06345 0.55 -0.1 1,219,029 - rlmD LU632_RS06345 0.61 +0.4 1,219,079 - rlmD LU632_RS06345 0.64 -0.7 1,219,089 - rlmD LU632_RS06345 0.65 +0.8 1,219,111 + rlmD LU632_RS06345 0.67 -0.0 1,219,140 - rlmD LU632_RS06345 0.69 -0.4 1,219,194 - rlmD LU632_RS06345 0.73 -0.4 1,219,198 + rlmD LU632_RS06345 0.73 +0.6 1,219,233 - rlmD LU632_RS06345 0.76 +0.5 1,219,242 - rlmD LU632_RS06345 0.76 +0.3 1,219,263 - rlmD LU632_RS06345 0.78 -1.6 1,219,280 - rlmD LU632_RS06345 0.79 +0.2 1,219,364 + rlmD LU632_RS06345 0.86 +0.8 1,219,364 + rlmD LU632_RS06345 0.86 +0.0 1,219,364 + rlmD LU632_RS06345 0.86 +0.4 1,219,365 - rlmD LU632_RS06345 0.86 -0.7 1,219,365 - rlmD LU632_RS06345 0.86 +0.2 1,219,396 - rlmD LU632_RS06345 0.88 -0.5 1,219,407 - rlmD LU632_RS06345 0.89 -0.3 1,219,416 - rlmD LU632_RS06345 0.89 -2.7 1,219,484 + +2.2 1,219,485 - -0.1 1,219,485 - -0.1 1,219,485 - +0.1 1,219,523 - +0.0 1,219,526 + -0.3 1,219,925 + relA LU632_RS06350 0.16 -0.1 1,219,981 - relA LU632_RS06350 0.18 -0.1 1,219,981 - relA LU632_RS06350 0.18 +1.7 1,220,037 + relA LU632_RS06350 0.21 -1.7 1,220,037 + relA LU632_RS06350 0.21 +0.5 1,220,038 - relA LU632_RS06350 0.21 +0.0 1,220,038 - relA LU632_RS06350 0.21 +1.2 1,220,110 - relA LU632_RS06350 0.24 +0.2 1,220,110 - relA LU632_RS06350 0.24 -0.7 1,220,110 - relA LU632_RS06350 0.24 -0.5 1,220,110 - relA LU632_RS06350 0.24 +1.6 1,220,114 - relA LU632_RS06350 0.24 +0.6 1,220,114 - relA LU632_RS06350 0.24 -0.2 1,220,182 + relA LU632_RS06350 0.27 +0.9 1,220,200 + relA LU632_RS06350 0.28 -0.1 1,220,201 - relA LU632_RS06350 0.28 +0.0 1,220,201 - relA LU632_RS06350 0.28 +1.2 1,220,203 - relA LU632_RS06350 0.28 -2.0 1,220,203 - relA LU632_RS06350 0.28 +0.4 1,220,203 - relA LU632_RS06350 0.28 +0.7 1,220,251 + relA LU632_RS06350 0.31 +0.4 1,220,251 + relA LU632_RS06350 0.31 +0.9 1,220,252 - relA LU632_RS06350 0.31 +0.1 1,220,252 - relA LU632_RS06350 0.31 +0.4 1,220,334 + relA LU632_RS06350 0.34 -1.0 1,220,334 + relA LU632_RS06350 0.34 -0.4 1,220,334 + relA LU632_RS06350 0.34 -1.0 1,220,334 + relA LU632_RS06350 0.34 +0.0 1,220,334 + relA LU632_RS06350 0.34 -0.1 1,220,334 + relA LU632_RS06350 0.34 +0.3 1,220,335 - relA LU632_RS06350 0.34 +0.5 1,220,339 - relA LU632_RS06350 0.34 -0.3 1,220,339 - relA LU632_RS06350 0.34 +3.2 1,220,396 + relA LU632_RS06350 0.37 -0.1 1,220,396 + relA LU632_RS06350 0.37 -0.3 1,220,396 + relA LU632_RS06350 0.37 -1.3 1,220,397 - relA LU632_RS06350 0.37 -0.2 1,220,497 + relA LU632_RS06350 0.42 -0.6 1,220,497 + relA LU632_RS06350 0.42 -0.3 1,220,497 + relA LU632_RS06350 0.42 +0.1 1,220,497 + relA LU632_RS06350 0.42 +0.2 1,220,498 - relA LU632_RS06350 0.42 +0.5 1,220,498 - relA LU632_RS06350 0.42 -0.2 1,220,498 - relA LU632_RS06350 0.42 -0.8 1,220,498 - relA LU632_RS06350 0.42 -0.7 1,220,498 - relA LU632_RS06350 0.42 -0.2 1,220,546 + relA LU632_RS06350 0.44 -0.0 1,220,556 + relA LU632_RS06350 0.44 -0.4 1,220,638 + relA LU632_RS06350 0.48 +1.2 1,220,640 + relA LU632_RS06350 0.48 +0.1 1,220,641 - relA LU632_RS06350 0.48 +1.2 1,220,716 - relA LU632_RS06350 0.51 -0.3 1,220,865 + relA LU632_RS06350 0.58 -0.7 1,220,928 + relA LU632_RS06350 0.61 +0.0 1,220,933 - relA LU632_RS06350 0.61 +1.2 1,220,940 - relA LU632_RS06350 0.61 -0.0 1,220,964 + relA LU632_RS06350 0.63 -0.3 1,221,136 - relA LU632_RS06350 0.70 -0.8 1,221,175 + relA LU632_RS06350 0.72 -1.0 1,221,465 + relA LU632_RS06350 0.85 +1.2 1,221,651 - -0.7 1,221,702 + -0.1 1,221,718 + -0.0 1,221,718 + +0.6 1,221,819 + LU632_RS06355 0.18 -0.3 1,221,907 - LU632_RS06355 0.58 -2.8 1,221,956 + LU632_RS06355 0.81 -1.2 1,221,957 - LU632_RS06355 0.81 +0.1 1,221,961 + LU632_RS06355 0.83 -1.0 1,222,084 + mazG LU632_RS06360 0.11 +0.1 1,222,084 + mazG LU632_RS06360 0.11 -0.2 1,222,085 - mazG LU632_RS06360 0.11 +0.2 1,222,085 - mazG LU632_RS06360 0.11 +0.9 1,222,187 + mazG LU632_RS06360 0.24 -0.5 1,222,188 - mazG LU632_RS06360 0.24 -1.2 1,222,204 + mazG LU632_RS06360 0.26 -0.8 1,222,213 - mazG LU632_RS06360 0.27 -0.1 1,222,236 + mazG LU632_RS06360 0.30 +0.4 1,222,255 - mazG LU632_RS06360 0.33 +0.7 1,222,293 + mazG LU632_RS06360 0.37 +0.4 1,222,294 - mazG LU632_RS06360 0.38 -0.6 1,222,403 + mazG LU632_RS06360 0.51 +0.2 1,222,403 + mazG LU632_RS06360 0.51 +0.2 1,222,404 - mazG LU632_RS06360 0.52 -1.9 1,222,404 - mazG LU632_RS06360 0.52 +1.5 1,222,410 + mazG LU632_RS06360 0.52 -0.4 1,222,508 - mazG LU632_RS06360 0.65 -0.5 1,222,508 - mazG LU632_RS06360 0.65 -0.1 1,222,627 - mazG LU632_RS06360 0.80 +0.5 1,222,627 - mazG LU632_RS06360 0.80 -0.3 1,222,630 - mazG LU632_RS06360 0.80 -0.3 1,222,781 - -0.8 1,222,781 - -2.4 1,222,798 - +0.7
Or see this region's nucleotide sequence