Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05330

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05325 and LU632_RS05330 are separated by 79 nucleotidesLU632_RS05330 and LU632_RS05335 are separated by 147 nucleotides LU632_RS05325: LU632_RS05325 - hypothetical protein, at 1,029,617 to 1,029,925 _RS05325 LU632_RS05330: LU632_RS05330 - hypothetical protein, at 1,030,005 to 1,030,616 _RS05330 LU632_RS05335: LU632_RS05335 - DUF1281 domain-containing protein, at 1,030,764 to 1,031,714 _RS05335 Position (kb) 1030 1031Strain fitness (log2 ratio) -1 0 1at 1029.052 kb on - strandat 1029.068 kb on + strandat 1029.068 kb on + strandat 1029.156 kb on + strandat 1029.223 kb on - strandat 1029.261 kb on + strandat 1029.262 kb on - strandat 1029.267 kb on - strandat 1029.267 kb on - strandat 1029.389 kb on - strandat 1029.625 kb on + strandat 1029.627 kb on + strandat 1029.627 kb on + strandat 1029.628 kb on - strandat 1029.710 kb on - strand, within LU632_RS05325

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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1,029,052 - -0.1
1,029,068 + +0.3
1,029,068 + -1.1
1,029,156 + +0.5
1,029,223 - +0.4
1,029,261 + +0.7
1,029,262 - +0.0
1,029,267 - -0.6
1,029,267 - +0.9
1,029,389 - +0.6
1,029,625 + -0.5
1,029,627 + -0.3
1,029,627 + -0.6
1,029,628 - +0.4
1,029,710 - LU632_RS05325 0.30 -0.5

Or see this region's nucleotide sequence