Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04930 and traD are separated by 500 nucleotides traD and LU632_RS04940 overlap by 8 nucleotides LU632_RS04940 and LU632_RS04945 are separated by 100 nucleotides
LU632_RS04930: LU632_RS04930 - TIGR03759 family integrating conjugative element protein, at 961,138 to 961,842
_RS04930
LU632_RS04935: traD - type IV conjugative transfer system coupling protein TraD, at 962,343 to 963,739
traD
LU632_RS04940: LU632_RS04940 - TIGR03747 family integrating conjugative element membrane protein, at 963,732 to 964,490
_RS04940
LU632_RS04945: LU632_RS04945 - hypothetical protein, at 964,591 to 964,812
_RS04945
Position (kb) 962
963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 961.644 kb on + strand, within LU632_RS04930 at 961.645 kb on - strand, within LU632_RS04930 at 961.645 kb on - strand, within LU632_RS04930 at 961.648 kb on + strand, within LU632_RS04930 at 961.648 kb on + strand, within LU632_RS04930 at 961.649 kb on - strand, within LU632_RS04930 at 961.678 kb on - strand, within LU632_RS04930 at 961.683 kb on - strand, within LU632_RS04930 at 961.683 kb on - strand, within LU632_RS04930 at 961.740 kb on + strand, within LU632_RS04930 at 961.741 kb on - strand, within LU632_RS04930 at 961.741 kb on - strand, within LU632_RS04930 at 961.827 kb on + strand at 961.828 kb on - strand at 961.905 kb on + strand at 961.906 kb on - strand at 961.906 kb on - strand at 961.933 kb on + strand at 962.058 kb on - strand at 962.058 kb on - strand at 962.123 kb on + strand at 962.147 kb on + strand at 962.147 kb on + strand at 962.239 kb on + strand at 962.240 kb on - strand at 962.382 kb on + strand at 962.383 kb on - strand at 962.383 kb on - strand at 962.431 kb on + strand at 962.540 kb on - strand, within traD at 962.581 kb on - strand, within traD at 962.598 kb on + strand, within traD at 962.598 kb on + strand, within traD at 962.599 kb on - strand, within traD at 962.622 kb on + strand, within traD at 962.623 kb on - strand, within traD at 962.623 kb on - strand, within traD at 962.750 kb on - strand, within traD at 962.753 kb on + strand, within traD at 962.753 kb on + strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.802 kb on + strand, within traD at 962.803 kb on - strand, within traD at 962.803 kb on - strand, within traD at 962.854 kb on - strand, within traD at 962.938 kb on - strand, within traD at 962.983 kb on + strand, within traD at 962.984 kb on - strand, within traD at 963.006 kb on + strand, within traD at 963.006 kb on + strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.099 kb on + strand, within traD at 963.100 kb on - strand, within traD at 963.337 kb on + strand, within traD at 963.338 kb on - strand, within traD at 963.342 kb on + strand, within traD at 963.343 kb on - strand, within traD at 963.404 kb on + strand, within traD at 963.749 kb on + strand at 963.750 kb on - strand at 963.752 kb on + strand at 963.752 kb on + strand at 963.753 kb on - strand at 963.753 kb on - strand at 963.753 kb on - strand at 963.795 kb on + strand at 963.798 kb on - strand at 963.798 kb on - strand at 963.798 kb on - strand at 963.884 kb on - strand, within LU632_RS04940 at 964.008 kb on - strand, within LU632_RS04940 at 964.022 kb on - strand, within LU632_RS04940 at 964.026 kb on + strand, within LU632_RS04940 at 964.055 kb on + strand, within LU632_RS04940 at 964.066 kb on + strand, within LU632_RS04940 at 964.153 kb on + strand, within LU632_RS04940 at 964.153 kb on + strand, within LU632_RS04940 at 964.153 kb on + strand, within LU632_RS04940 at 964.154 kb on - strand, within LU632_RS04940 at 964.154 kb on - strand, within LU632_RS04940 at 964.162 kb on - strand, within LU632_RS04940 at 964.162 kb on - strand, within LU632_RS04940 at 964.183 kb on + strand, within LU632_RS04940 at 964.184 kb on - strand, within LU632_RS04940 at 964.337 kb on + strand, within LU632_RS04940 at 964.364 kb on - strand, within LU632_RS04940 at 964.380 kb on + strand, within LU632_RS04940 at 964.451 kb on + strand at 964.489 kb on - strand at 964.489 kb on - strand at 964.514 kb on - strand at 964.563 kb on + strand at 964.671 kb on - strand, within LU632_RS04945
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 961,644 + LU632_RS04930 0.72 -1.3 961,645 - LU632_RS04930 0.72 -1.2 961,645 - LU632_RS04930 0.72 -0.4 961,648 + LU632_RS04930 0.72 -0.3 961,648 + LU632_RS04930 0.72 -1.6 961,649 - LU632_RS04930 0.72 -0.2 961,678 - LU632_RS04930 0.77 +0.4 961,683 - LU632_RS04930 0.77 +1.4 961,683 - LU632_RS04930 0.77 -0.8 961,740 + LU632_RS04930 0.85 -0.4 961,741 - LU632_RS04930 0.86 +0.8 961,741 - LU632_RS04930 0.86 -0.4 961,827 + +0.3 961,828 - -0.8 961,905 + -0.7 961,906 - +0.4 961,906 - +0.2 961,933 + +1.2 962,058 - +0.5 962,058 - +0.6 962,123 + -0.1 962,147 + -0.1 962,147 + -0.7 962,239 + +1.0 962,240 - -0.6 962,382 + -0.6 962,383 - -0.2 962,383 - +0.6 962,431 + -0.1 962,540 - traD LU632_RS04935 0.14 +0.3 962,581 - traD LU632_RS04935 0.17 +0.3 962,598 + traD LU632_RS04935 0.18 -0.0 962,598 + traD LU632_RS04935 0.18 -0.5 962,599 - traD LU632_RS04935 0.18 -0.0 962,622 + traD LU632_RS04935 0.20 +0.1 962,623 - traD LU632_RS04935 0.20 +0.6 962,623 - traD LU632_RS04935 0.20 -0.2 962,750 - traD LU632_RS04935 0.29 +1.4 962,753 + traD LU632_RS04935 0.29 -0.2 962,753 + traD LU632_RS04935 0.29 -1.0 962,754 - traD LU632_RS04935 0.29 -0.8 962,754 - traD LU632_RS04935 0.29 -1.6 962,754 - traD LU632_RS04935 0.29 +0.4 962,754 - traD LU632_RS04935 0.29 +0.6 962,754 - traD LU632_RS04935 0.29 -1.3 962,802 + traD LU632_RS04935 0.33 -0.3 962,803 - traD LU632_RS04935 0.33 +0.2 962,803 - traD LU632_RS04935 0.33 +0.3 962,854 - traD LU632_RS04935 0.37 -0.6 962,938 - traD LU632_RS04935 0.43 -0.7 962,983 + traD LU632_RS04935 0.46 -2.9 962,984 - traD LU632_RS04935 0.46 +0.4 963,006 + traD LU632_RS04935 0.47 -0.1 963,006 + traD LU632_RS04935 0.47 +0.0 963,007 - traD LU632_RS04935 0.48 +3.4 963,007 - traD LU632_RS04935 0.48 -0.1 963,007 - traD LU632_RS04935 0.48 -1.2 963,007 - traD LU632_RS04935 0.48 +0.1 963,007 - traD LU632_RS04935 0.48 +0.5 963,007 - traD LU632_RS04935 0.48 -0.5 963,007 - traD LU632_RS04935 0.48 -0.8 963,007 - traD LU632_RS04935 0.48 -0.1 963,007 - traD LU632_RS04935 0.48 +0.2 963,007 - traD LU632_RS04935 0.48 -1.2 963,099 + traD LU632_RS04935 0.54 -0.2 963,100 - traD LU632_RS04935 0.54 -0.3 963,337 + traD LU632_RS04935 0.71 +0.5 963,338 - traD LU632_RS04935 0.71 -0.4 963,342 + traD LU632_RS04935 0.72 +0.2 963,343 - traD LU632_RS04935 0.72 -0.2 963,404 + traD LU632_RS04935 0.76 +2.2 963,749 + +0.7 963,750 - -0.1 963,752 + +0.2 963,752 + -0.2 963,753 - -0.3 963,753 - -0.4 963,753 - -0.4 963,795 + +0.3 963,798 - -0.6 963,798 - -0.3 963,798 - +0.4 963,884 - LU632_RS04940 0.20 -1.2 964,008 - LU632_RS04940 0.36 +0.4 964,022 - LU632_RS04940 0.38 -1.2 964,026 + LU632_RS04940 0.39 -1.7 964,055 + LU632_RS04940 0.43 +2.2 964,066 + LU632_RS04940 0.44 -0.6 964,153 + LU632_RS04940 0.55 -1.1 964,153 + LU632_RS04940 0.55 -1.4 964,153 + LU632_RS04940 0.55 +0.8 964,154 - LU632_RS04940 0.56 +0.8 964,154 - LU632_RS04940 0.56 -0.5 964,162 - LU632_RS04940 0.57 +0.0 964,162 - LU632_RS04940 0.57 +1.2 964,183 + LU632_RS04940 0.59 +0.4 964,184 - LU632_RS04940 0.60 -0.2 964,337 + LU632_RS04940 0.80 -0.2 964,364 - LU632_RS04940 0.83 -0.7 964,380 + LU632_RS04940 0.85 +0.2 964,451 + +0.6 964,489 - -1.4 964,489 - -1.2 964,514 - -1.2 964,563 + -1.3 964,671 - LU632_RS04945 0.36 -1.4
Or see this region's nucleotide sequence