Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04715 and LU632_RS04720 are separated by 207 nucleotides LU632_RS04720 and LU632_RS04725 overlap by 14 nucleotides LU632_RS04725 and LU632_RS04730 are separated by 126 nucleotides LU632_RS04730 and LU632_RS04735 are separated by 132 nucleotides
LU632_RS04715: LU632_RS04715 - IS5 family transposase, at 924,710 to 925,477
_RS04715
LU632_RS04720: LU632_RS04720 - response regulator transcription factor, at 925,685 to 926,320
_RS04720
LU632_RS04725: LU632_RS04725 - transporter substrate-binding domain-containing protein, at 926,307 to 929,459
_RS04725
LU632_RS04730: LU632_RS04730 - DUF1090 domain-containing protein, at 929,586 to 930,020
_RS04730
LU632_RS04735: LU632_RS04735 - fimbria/pilus outer membrane usher protein, at 930,153 to 932,198
_RS04735
Position (kb) 926
927
928
929
930 Strain fitness (log2 ratio) -2
-1
0
1
2 at 925.338 kb on - strand, within LU632_RS04715 at 925.391 kb on - strand, within LU632_RS04715 at 925.413 kb on - strand at 925.500 kb on - strand at 925.500 kb on - strand at 925.500 kb on - strand at 925.500 kb on - strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.502 kb on + strand at 925.502 kb on - strand at 925.549 kb on - strand at 925.576 kb on + strand at 925.577 kb on - strand at 925.577 kb on - strand at 925.600 kb on + strand at 925.600 kb on + strand at 925.600 kb on + strand at 925.600 kb on + strand at 925.601 kb on - strand at 925.601 kb on - strand at 925.601 kb on - strand at 925.628 kb on + strand at 925.628 kb on + strand at 925.628 kb on + strand at 925.629 kb on - strand at 925.631 kb on - strand at 925.631 kb on - strand at 925.684 kb on + strand at 925.684 kb on + strand at 925.685 kb on - strand at 925.685 kb on - strand at 925.762 kb on + strand, within LU632_RS04720 at 925.774 kb on + strand, within LU632_RS04720 at 925.781 kb on - strand, within LU632_RS04720 at 925.781 kb on - strand, within LU632_RS04720 at 925.886 kb on - strand, within LU632_RS04720 at 925.906 kb on + strand, within LU632_RS04720 at 925.906 kb on + strand, within LU632_RS04720 at 925.942 kb on - strand, within LU632_RS04720 at 925.943 kb on + strand, within LU632_RS04720 at 925.982 kb on - strand, within LU632_RS04720 at 926.032 kb on + strand, within LU632_RS04720 at 926.032 kb on + strand, within LU632_RS04720 at 926.212 kb on + strand, within LU632_RS04720 at 926.213 kb on - strand, within LU632_RS04720 at 926.228 kb on + strand, within LU632_RS04720 at 926.228 kb on + strand, within LU632_RS04720 at 926.228 kb on + strand, within LU632_RS04720 at 926.229 kb on - strand, within LU632_RS04720 at 926.229 kb on - strand, within LU632_RS04720 at 926.230 kb on + strand, within LU632_RS04720 at 926.278 kb on + strand at 926.336 kb on - strand at 926.381 kb on + strand at 926.610 kb on + strand at 926.681 kb on + strand, within LU632_RS04725 at 926.696 kb on - strand, within LU632_RS04725 at 926.710 kb on - strand, within LU632_RS04725 at 926.793 kb on + strand, within LU632_RS04725 at 926.956 kb on + strand, within LU632_RS04725 at 926.956 kb on + strand, within LU632_RS04725 at 926.963 kb on - strand, within LU632_RS04725 at 926.963 kb on - strand, within LU632_RS04725 at 927.082 kb on + strand, within LU632_RS04725 at 927.088 kb on + strand, within LU632_RS04725 at 927.161 kb on + strand, within LU632_RS04725 at 927.187 kb on + strand, within LU632_RS04725 at 927.299 kb on + strand, within LU632_RS04725 at 927.435 kb on + strand, within LU632_RS04725 at 927.435 kb on + strand, within LU632_RS04725 at 927.435 kb on + strand, within LU632_RS04725 at 927.435 kb on + strand, within LU632_RS04725 at 927.435 kb on + strand, within LU632_RS04725 at 927.436 kb on - strand, within LU632_RS04725 at 927.437 kb on + strand, within LU632_RS04725 at 927.437 kb on + strand, within LU632_RS04725 at 927.437 kb on + strand, within LU632_RS04725 at 927.437 kb on + strand, within LU632_RS04725 at 927.438 kb on - strand, within LU632_RS04725 at 927.533 kb on - strand, within LU632_RS04725 at 927.536 kb on + strand, within LU632_RS04725 at 927.536 kb on + strand, within LU632_RS04725 at 927.537 kb on - strand, within LU632_RS04725 at 927.666 kb on + strand, within LU632_RS04725 at 927.666 kb on + strand, within LU632_RS04725 at 927.667 kb on - strand, within LU632_RS04725 at 927.667 kb on - strand, within LU632_RS04725 at 927.667 kb on - strand, within LU632_RS04725 at 927.692 kb on + strand, within LU632_RS04725 at 927.693 kb on - strand, within LU632_RS04725 at 927.693 kb on - strand, within LU632_RS04725 at 927.749 kb on - strand, within LU632_RS04725 at 927.753 kb on - strand, within LU632_RS04725 at 927.759 kb on - strand, within LU632_RS04725 at 927.776 kb on + strand, within LU632_RS04725 at 927.776 kb on + strand, within LU632_RS04725 at 927.776 kb on + strand, within LU632_RS04725 at 927.777 kb on - strand, within LU632_RS04725 at 927.874 kb on + strand, within LU632_RS04725 at 928.057 kb on + strand, within LU632_RS04725 at 928.603 kb on - strand, within LU632_RS04725 at 928.603 kb on - strand, within LU632_RS04725 at 928.603 kb on - strand, within LU632_RS04725 at 928.604 kb on + strand, within LU632_RS04725 at 928.723 kb on + strand, within LU632_RS04725 at 928.723 kb on + strand, within LU632_RS04725 at 928.724 kb on - strand, within LU632_RS04725 at 928.731 kb on - strand, within LU632_RS04725 at 928.732 kb on + strand, within LU632_RS04725 at 928.732 kb on + strand, within LU632_RS04725 at 928.732 kb on + strand, within LU632_RS04725 at 928.733 kb on - strand, within LU632_RS04725 at 928.733 kb on - strand, within LU632_RS04725 at 928.807 kb on + strand, within LU632_RS04725 at 928.807 kb on + strand, within LU632_RS04725 at 928.808 kb on - strand, within LU632_RS04725 at 928.923 kb on - strand, within LU632_RS04725 at 928.957 kb on + strand, within LU632_RS04725 at 928.958 kb on - strand, within LU632_RS04725 at 928.958 kb on - strand, within LU632_RS04725 at 928.972 kb on - strand, within LU632_RS04725 at 929.082 kb on - strand, within LU632_RS04725 at 929.082 kb on - strand, within LU632_RS04725 at 929.395 kb on + strand at 929.413 kb on + strand at 929.469 kb on + strand at 929.470 kb on - strand at 929.470 kb on - strand at 929.518 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.631 kb on - strand, within LU632_RS04730 at 929.631 kb on - strand, within LU632_RS04730 at 929.727 kb on - strand, within LU632_RS04730 at 929.780 kb on + strand, within LU632_RS04730 at 929.780 kb on + strand, within LU632_RS04730 at 929.781 kb on - strand, within LU632_RS04730 at 929.781 kb on - strand, within LU632_RS04730 at 929.783 kb on + strand, within LU632_RS04730 at 929.892 kb on - strand, within LU632_RS04730 at 929.904 kb on - strand, within LU632_RS04730 at 930.014 kb on + strand at 930.014 kb on + strand at 930.019 kb on - strand at 930.173 kb on + strand at 930.173 kb on + strand at 930.449 kb on + strand, within LU632_RS04735
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 925,338 - LU632_RS04715 0.82 -1.3 925,391 - LU632_RS04715 0.89 -0.3 925,413 - +0.4 925,500 - +0.7 925,500 - -0.6 925,500 - +0.4 925,500 - +0.2 925,501 + -1.3 925,501 + +0.9 925,501 + -0.1 925,501 + +0.2 925,501 + -0.2 925,502 + +1.4 925,502 - +0.5 925,549 - +0.1 925,576 + -0.0 925,577 - -0.7 925,577 - -1.1 925,600 + +0.3 925,600 + -0.1 925,600 + -0.6 925,600 + -0.6 925,601 - -0.0 925,601 - +0.6 925,601 - -1.4 925,628 + -0.8 925,628 + +0.5 925,628 + -0.7 925,629 - +0.9 925,631 - -0.6 925,631 - -0.4 925,684 + +0.6 925,684 + -0.3 925,685 - -0.8 925,685 - -1.1 925,762 + LU632_RS04720 0.12 -0.4 925,774 + LU632_RS04720 0.14 -0.2 925,781 - LU632_RS04720 0.15 +0.6 925,781 - LU632_RS04720 0.15 +1.2 925,886 - LU632_RS04720 0.32 +0.2 925,906 + LU632_RS04720 0.35 +0.8 925,906 + LU632_RS04720 0.35 +0.4 925,942 - LU632_RS04720 0.40 -0.2 925,943 + LU632_RS04720 0.41 -0.6 925,982 - LU632_RS04720 0.47 -0.7 926,032 + LU632_RS04720 0.55 -0.5 926,032 + LU632_RS04720 0.55 +0.1 926,212 + LU632_RS04720 0.83 +0.9 926,213 - LU632_RS04720 0.83 +0.2 926,228 + LU632_RS04720 0.85 +1.2 926,228 + LU632_RS04720 0.85 -0.3 926,228 + LU632_RS04720 0.85 -0.8 926,229 - LU632_RS04720 0.86 -0.1 926,229 - LU632_RS04720 0.86 +0.1 926,230 + LU632_RS04720 0.86 -1.2 926,278 + +0.4 926,336 - +1.1 926,381 + -0.1 926,610 + -0.3 926,681 + LU632_RS04725 0.12 -1.8 926,696 - LU632_RS04725 0.12 +0.5 926,710 - LU632_RS04725 0.13 +0.8 926,793 + LU632_RS04725 0.15 +0.2 926,956 + LU632_RS04725 0.21 +0.2 926,956 + LU632_RS04725 0.21 -0.8 926,963 - LU632_RS04725 0.21 -1.6 926,963 - LU632_RS04725 0.21 -0.5 927,082 + LU632_RS04725 0.25 +0.2 927,088 + LU632_RS04725 0.25 -0.1 927,161 + LU632_RS04725 0.27 -0.6 927,187 + LU632_RS04725 0.28 -0.6 927,299 + LU632_RS04725 0.31 -0.0 927,435 + LU632_RS04725 0.36 -0.8 927,435 + LU632_RS04725 0.36 -1.3 927,435 + LU632_RS04725 0.36 +0.7 927,435 + LU632_RS04725 0.36 -1.6 927,435 + LU632_RS04725 0.36 -0.3 927,436 - LU632_RS04725 0.36 +0.8 927,437 + LU632_RS04725 0.36 -0.4 927,437 + LU632_RS04725 0.36 -0.0 927,437 + LU632_RS04725 0.36 -0.0 927,437 + LU632_RS04725 0.36 +2.2 927,438 - LU632_RS04725 0.36 +0.4 927,533 - LU632_RS04725 0.39 +0.5 927,536 + LU632_RS04725 0.39 +0.7 927,536 + LU632_RS04725 0.39 -0.2 927,537 - LU632_RS04725 0.39 -0.7 927,666 + LU632_RS04725 0.43 +0.2 927,666 + LU632_RS04725 0.43 -1.6 927,667 - LU632_RS04725 0.43 -1.6 927,667 - LU632_RS04725 0.43 +0.7 927,667 - LU632_RS04725 0.43 +1.2 927,692 + LU632_RS04725 0.44 -0.1 927,693 - LU632_RS04725 0.44 -0.4 927,693 - LU632_RS04725 0.44 -0.2 927,749 - LU632_RS04725 0.46 -1.3 927,753 - LU632_RS04725 0.46 -1.4 927,759 - LU632_RS04725 0.46 -0.3 927,776 + LU632_RS04725 0.47 -0.2 927,776 + LU632_RS04725 0.47 -0.4 927,776 + LU632_RS04725 0.47 -0.4 927,777 - LU632_RS04725 0.47 +1.2 927,874 + LU632_RS04725 0.50 +0.2 928,057 + LU632_RS04725 0.56 -0.4 928,603 - LU632_RS04725 0.73 -1.0 928,603 - LU632_RS04725 0.73 -0.0 928,603 - LU632_RS04725 0.73 +0.6 928,604 + LU632_RS04725 0.73 +1.4 928,723 + LU632_RS04725 0.77 -0.8 928,723 + LU632_RS04725 0.77 +1.2 928,724 - LU632_RS04725 0.77 -0.3 928,731 - LU632_RS04725 0.77 -0.2 928,732 + LU632_RS04725 0.77 -0.3 928,732 + LU632_RS04725 0.77 -0.6 928,732 + LU632_RS04725 0.77 -0.7 928,733 - LU632_RS04725 0.77 -0.3 928,733 - LU632_RS04725 0.77 +1.6 928,807 + LU632_RS04725 0.79 +0.7 928,807 + LU632_RS04725 0.79 -0.4 928,808 - LU632_RS04725 0.79 -0.4 928,923 - LU632_RS04725 0.83 -0.4 928,957 + LU632_RS04725 0.84 -0.0 928,958 - LU632_RS04725 0.84 +0.6 928,958 - LU632_RS04725 0.84 -1.2 928,972 - LU632_RS04725 0.85 -0.4 929,082 - LU632_RS04725 0.88 -0.7 929,082 - LU632_RS04725 0.88 -0.1 929,395 + -0.5 929,413 + -0.9 929,469 + +1.2 929,470 - +0.3 929,470 - -0.3 929,518 + +0.8 929,563 + -1.0 929,563 + +1.2 929,563 + +0.8 929,563 + +0.2 929,631 - LU632_RS04730 0.10 +0.9 929,631 - LU632_RS04730 0.10 +0.9 929,727 - LU632_RS04730 0.32 -0.1 929,780 + LU632_RS04730 0.45 -0.6 929,780 + LU632_RS04730 0.45 +0.4 929,781 - LU632_RS04730 0.45 +0.6 929,781 - LU632_RS04730 0.45 +1.2 929,783 + LU632_RS04730 0.45 -0.6 929,892 - LU632_RS04730 0.70 -0.1 929,904 - LU632_RS04730 0.73 -0.7 930,014 + +1.2 930,014 + -0.5 930,019 - -0.6 930,173 + -0.9 930,173 + +0.1 930,449 + LU632_RS04735 0.14 +0.1
Or see this region's nucleotide sequence