Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04695 and LU632_RS04700 are separated by 2 nucleotides LU632_RS04700 and LU632_RS04705 are separated by 256 nucleotides
LU632_RS04695: LU632_RS04695 - MFS transporter, at 919,040 to 920,632
_RS04695
LU632_RS04700: LU632_RS04700 - HlyD family secretion protein, at 920,635 to 921,663
_RS04700
LU632_RS04705: LU632_RS04705 - helix-turn-helix domain-containing protein, at 921,920 to 922,945
_RS04705
Position (kb) 920
921
922 Strain fitness (log2 ratio) -1
0
1
2 at 919.659 kb on + strand, within LU632_RS04695 at 919.659 kb on + strand, within LU632_RS04695 at 919.659 kb on + strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.801 kb on + strand, within LU632_RS04695 at 919.802 kb on - strand, within LU632_RS04695 at 919.802 kb on - strand, within LU632_RS04695 at 919.831 kb on + strand, within LU632_RS04695 at 919.890 kb on + strand, within LU632_RS04695 at 919.890 kb on + strand, within LU632_RS04695 at 919.920 kb on + strand, within LU632_RS04695 at 919.932 kb on - strand, within LU632_RS04695 at 919.995 kb on + strand, within LU632_RS04695 at 920.019 kb on + strand, within LU632_RS04695 at 920.085 kb on + strand, within LU632_RS04695 at 920.086 kb on - strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.118 kb on + strand, within LU632_RS04695 at 920.119 kb on - strand, within LU632_RS04695 at 920.261 kb on - strand, within LU632_RS04695 at 920.344 kb on + strand, within LU632_RS04695 at 920.345 kb on - strand, within LU632_RS04695 at 920.345 kb on - strand, within LU632_RS04695 at 920.350 kb on - strand, within LU632_RS04695 at 920.366 kb on - strand, within LU632_RS04695 at 920.380 kb on + strand, within LU632_RS04695 at 920.381 kb on - strand, within LU632_RS04695 at 920.381 kb on - strand, within LU632_RS04695 at 920.381 kb on - strand, within LU632_RS04695 at 920.416 kb on + strand, within LU632_RS04695 at 920.417 kb on - strand, within LU632_RS04695 at 920.460 kb on + strand, within LU632_RS04695 at 920.470 kb on + strand, within LU632_RS04695 at 920.474 kb on - strand at 920.478 kb on + strand at 920.519 kb on + strand at 920.519 kb on + strand at 920.519 kb on + strand at 920.519 kb on + strand at 920.520 kb on - strand at 920.604 kb on + strand at 920.604 kb on + strand at 920.605 kb on - strand at 920.605 kb on - strand at 920.631 kb on - strand at 920.661 kb on + strand at 920.663 kb on + strand at 920.664 kb on - strand at 920.681 kb on + strand at 920.802 kb on + strand, within LU632_RS04700 at 920.803 kb on - strand, within LU632_RS04700 at 920.803 kb on - strand, within LU632_RS04700 at 920.803 kb on - strand, within LU632_RS04700 at 920.826 kb on + strand, within LU632_RS04700 at 920.913 kb on - strand, within LU632_RS04700 at 920.925 kb on - strand, within LU632_RS04700 at 920.974 kb on - strand, within LU632_RS04700 at 920.974 kb on - strand, within LU632_RS04700 at 921.022 kb on + strand, within LU632_RS04700 at 921.023 kb on - strand, within LU632_RS04700 at 921.023 kb on - strand, within LU632_RS04700 at 921.105 kb on + strand, within LU632_RS04700 at 921.109 kb on - strand, within LU632_RS04700 at 921.109 kb on - strand, within LU632_RS04700 at 921.195 kb on - strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.263 kb on - strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.380 kb on + strand, within LU632_RS04700 at 921.380 kb on + strand, within LU632_RS04700 at 921.381 kb on - strand, within LU632_RS04700 at 921.381 kb on - strand, within LU632_RS04700 at 921.666 kb on - strand at 921.670 kb on + strand at 921.671 kb on - strand at 921.745 kb on + strand at 921.806 kb on + strand at 921.807 kb on - strand at 921.819 kb on - strand at 921.891 kb on - strand at 922.322 kb on + strand, within LU632_RS04705 at 922.360 kb on - strand, within LU632_RS04705
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 919,659 + LU632_RS04695 0.39 -0.6 919,659 + LU632_RS04695 0.39 +0.6 919,659 + LU632_RS04695 0.39 -1.0 919,798 - LU632_RS04695 0.48 +0.6 919,798 - LU632_RS04695 0.48 +2.2 919,798 - LU632_RS04695 0.48 -0.4 919,798 - LU632_RS04695 0.48 -1.0 919,801 + LU632_RS04695 0.48 +1.5 919,802 - LU632_RS04695 0.48 +0.2 919,802 - LU632_RS04695 0.48 +1.2 919,831 + LU632_RS04695 0.50 +0.3 919,890 + LU632_RS04695 0.53 +0.1 919,890 + LU632_RS04695 0.53 -0.2 919,920 + LU632_RS04695 0.55 +1.8 919,932 - LU632_RS04695 0.56 -0.1 919,995 + LU632_RS04695 0.60 -1.1 920,019 + LU632_RS04695 0.61 +0.2 920,085 + LU632_RS04695 0.66 -0.4 920,086 - LU632_RS04695 0.66 +0.3 920,114 + LU632_RS04695 0.67 +0.2 920,114 + LU632_RS04695 0.67 +2.0 920,114 + LU632_RS04695 0.67 -0.2 920,114 + LU632_RS04695 0.67 +0.8 920,114 + LU632_RS04695 0.67 +0.6 920,114 + LU632_RS04695 0.67 -0.6 920,115 - LU632_RS04695 0.67 +0.0 920,115 - LU632_RS04695 0.67 +0.9 920,115 - LU632_RS04695 0.67 +0.3 920,115 - LU632_RS04695 0.67 -0.2 920,118 + LU632_RS04695 0.68 -0.8 920,119 - LU632_RS04695 0.68 -0.1 920,261 - LU632_RS04695 0.77 -0.5 920,344 + LU632_RS04695 0.82 -0.6 920,345 - LU632_RS04695 0.82 -0.2 920,345 - LU632_RS04695 0.82 +0.9 920,350 - LU632_RS04695 0.82 +1.0 920,366 - LU632_RS04695 0.83 -0.1 920,380 + LU632_RS04695 0.84 +0.3 920,381 - LU632_RS04695 0.84 -0.0 920,381 - LU632_RS04695 0.84 +0.2 920,381 - LU632_RS04695 0.84 -0.0 920,416 + LU632_RS04695 0.86 -0.1 920,417 - LU632_RS04695 0.86 +0.2 920,460 + LU632_RS04695 0.89 +0.2 920,470 + LU632_RS04695 0.90 -1.0 920,474 - -0.3 920,478 + +0.6 920,519 + +0.2 920,519 + +0.7 920,519 + +0.2 920,519 + +0.6 920,520 - -1.0 920,604 + +0.1 920,604 + -0.2 920,605 - -0.2 920,605 - +0.4 920,631 - -0.1 920,661 + -0.4 920,663 + +0.8 920,664 - +0.8 920,681 + -0.2 920,802 + LU632_RS04700 0.16 +0.6 920,803 - LU632_RS04700 0.16 -0.4 920,803 - LU632_RS04700 0.16 -0.7 920,803 - LU632_RS04700 0.16 -0.0 920,826 + LU632_RS04700 0.19 +1.3 920,913 - LU632_RS04700 0.27 +0.2 920,925 - LU632_RS04700 0.28 +0.1 920,974 - LU632_RS04700 0.33 +0.9 920,974 - LU632_RS04700 0.33 -0.1 921,022 + LU632_RS04700 0.38 +0.1 921,023 - LU632_RS04700 0.38 -0.8 921,023 - LU632_RS04700 0.38 +0.4 921,105 + LU632_RS04700 0.46 -0.3 921,109 - LU632_RS04700 0.46 +0.1 921,109 - LU632_RS04700 0.46 +0.2 921,195 - LU632_RS04700 0.54 +0.2 921,213 + LU632_RS04700 0.56 +1.0 921,213 + LU632_RS04700 0.56 +2.2 921,213 + LU632_RS04700 0.56 -0.5 921,263 - LU632_RS04700 0.61 +0.7 921,376 + LU632_RS04700 0.72 +0.0 921,376 + LU632_RS04700 0.72 -0.5 921,376 + LU632_RS04700 0.72 -0.2 921,380 + LU632_RS04700 0.72 -0.7 921,380 + LU632_RS04700 0.72 +1.1 921,381 - LU632_RS04700 0.72 -0.5 921,381 - LU632_RS04700 0.72 +1.3 921,666 - +0.1 921,670 + -0.4 921,671 - -0.3 921,745 + +1.2 921,806 + +0.0 921,807 - -1.2 921,819 - +1.2 921,891 - -0.5 922,322 + LU632_RS04705 0.39 +1.5 922,360 - LU632_RS04705 0.43 -0.5
Or see this region's nucleotide sequence