Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04470 and LU632_RS04475 are separated by 147 nucleotides LU632_RS04475 and LU632_RS04480 are separated by 113 nucleotides LU632_RS04480 and LU632_RS04485 are separated by 101 nucleotides LU632_RS04485 and LU632_RS04490 overlap by 4 nucleotides
LU632_RS04470: LU632_RS04470 - alpha/beta hydrolase-fold protein, at 880,941 to 881,840
_RS04470
LU632_RS04475: LU632_RS04475 - hypothetical protein, at 881,988 to 882,233
_RS04475
LU632_RS04480: LU632_RS04480 - helix-turn-helix transcriptional regulator, at 882,347 to 882,751
_RS04480
LU632_RS04485: LU632_RS04485 - SDR family oxidoreductase, at 882,853 to 883,704
_RS04485
LU632_RS04490: LU632_RS04490 - hypothetical protein, at 883,701 to 884,051
_RS04490
Position (kb) 882
883 Strain fitness (log2 ratio) -1
0
1
2 at 881.350 kb on - strand, within LU632_RS04470 at 881.352 kb on - strand, within LU632_RS04470 at 881.357 kb on - strand, within LU632_RS04470 at 881.657 kb on + strand, within LU632_RS04470 at 881.711 kb on + strand, within LU632_RS04470 at 881.771 kb on + strand at 881.774 kb on - strand at 881.981 kb on + strand at 882.035 kb on + strand, within LU632_RS04475 at 882.285 kb on - strand at 882.497 kb on + strand, within LU632_RS04480 at 882.634 kb on + strand, within LU632_RS04480 at 882.634 kb on + strand, within LU632_RS04480 at 882.638 kb on + strand, within LU632_RS04480 at 882.639 kb on - strand, within LU632_RS04480 at 882.799 kb on - strand at 882.800 kb on + strand at 882.938 kb on + strand at 883.052 kb on + strand, within LU632_RS04485 at 883.056 kb on - strand, within LU632_RS04485 at 883.421 kb on - strand, within LU632_RS04485
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 881,350 - LU632_RS04470 0.45 +0.9 881,352 - LU632_RS04470 0.46 -0.4 881,357 - LU632_RS04470 0.46 +1.0 881,657 + LU632_RS04470 0.80 -0.5 881,711 + LU632_RS04470 0.86 +0.1 881,771 + +0.3 881,774 - -0.3 881,981 + +0.6 882,035 + LU632_RS04475 0.19 +1.2 882,285 - -0.1 882,497 + LU632_RS04480 0.37 +0.3 882,634 + LU632_RS04480 0.71 +0.4 882,634 + LU632_RS04480 0.71 +0.7 882,638 + LU632_RS04480 0.72 +0.7 882,639 - LU632_RS04480 0.72 -0.2 882,799 - +0.4 882,800 + +2.1 882,938 + -0.7 883,052 + LU632_RS04485 0.23 -0.4 883,056 - LU632_RS04485 0.24 +0.1 883,421 - LU632_RS04485 0.67 +0.2
Or see this region's nucleotide sequence