Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04290 and LU632_RS04295 are separated by 187 nucleotides LU632_RS04295 and LU632_RS04300 are separated by 44 nucleotides LU632_RS04300 and LU632_RS04305 overlap by 9 nucleotides
LU632_RS04290: LU632_RS04290 - hypothetical protein, at 853,384 to 854,223
_RS04290
LU632_RS04295: LU632_RS04295 - IS91 family transposase, at 854,411 to 854,548
_RS04295
LU632_RS04300: LU632_RS04300 - IS3 family transposase, at 854,593 to 854,838
_RS04300
LU632_RS04305: LU632_RS04305 - DNA primase, at 854,830 to 855,231
_RS04305
Position (kb) 854
855 Strain fitness (log2 ratio) -1
0
1
2
3 at 853.743 kb on + strand, within LU632_RS04290 at 853.744 kb on - strand, within LU632_RS04290 at 853.771 kb on + strand, within LU632_RS04290 at 853.772 kb on - strand, within LU632_RS04290 at 854.192 kb on + strand at 854.309 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.583 kb on + strand at 854.584 kb on - strand at 854.590 kb on + strand at 854.591 kb on - strand at 854.677 kb on - strand, within LU632_RS04300 at 854.723 kb on + strand, within LU632_RS04300 at 854.813 kb on + strand, within LU632_RS04300 at 854.814 kb on - strand at 854.994 kb on + strand, within LU632_RS04305 at 855.244 kb on - strand at 855.244 kb on - strand at 855.434 kb on - strand at 855.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 853,743 + LU632_RS04290 0.43 +0.2 853,744 - LU632_RS04290 0.43 -1.2 853,771 + LU632_RS04290 0.46 -0.0 853,772 - LU632_RS04290 0.46 +0.0 854,192 + +0.6 854,309 + -0.5 854,424 + +0.2 854,424 + -0.1 854,424 + -0.5 854,424 + +1.2 854,425 - LU632_RS04295 0.10 -0.3 854,425 - LU632_RS04295 0.10 -0.9 854,425 - LU632_RS04295 0.10 +0.6 854,425 - LU632_RS04295 0.10 +0.7 854,425 - LU632_RS04295 0.10 -0.1 854,425 - LU632_RS04295 0.10 +1.2 854,583 + +0.2 854,584 - -0.2 854,590 + -1.4 854,591 - +0.1 854,677 - LU632_RS04300 0.34 +0.4 854,723 + LU632_RS04300 0.53 +0.1 854,813 + LU632_RS04300 0.89 -0.8 854,814 - +0.2 854,994 + LU632_RS04305 0.41 -1.3 855,244 - +1.4 855,244 - +1.0 855,434 - +3.0 855,488 - -0.1
Or see this region's nucleotide sequence