Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03990 and LU632_RS03995 are separated by 102 nucleotides LU632_RS03995 and LU632_RS04000 overlap by 33 nucleotides LU632_RS04000 and LU632_RS04005 are separated by 89 nucleotides LU632_RS04005 and LU632_RS04010 are separated by 8 nucleotides LU632_RS04010 and LU632_RS04015 are separated by 50 nucleotides
LU632_RS03990: LU632_RS03990 - hypothetical protein, at 802,480 to 802,935
_RS03990
LU632_RS03995: LU632_RS03995 - hypothetical protein, at 803,038 to 803,166
_RS03995
LU632_RS04000: LU632_RS04000 - helix-turn-helix domain-containing protein, at 803,134 to 803,268
_RS04000
LU632_RS04005: LU632_RS04005 - HNH/ENDO VII family nuclease, at 803,358 to 803,663
_RS04005
LU632_RS04010: LU632_RS04010 - SMI1/KNR4 family protein, at 803,672 to 804,093
_RS04010
LU632_RS04015: LU632_RS04015 - IS481 family transposase, at 804,144 to 805,034
_RS04015
Position (kb) 803
804
805 Strain fitness (log2 ratio) -1
0
1
2 at 803.043 kb on + strand at 803.044 kb on - strand at 803.044 kb on - strand at 803.047 kb on + strand at 803.047 kb on + strand at 803.047 kb on + strand at 803.047 kb on + strand at 803.047 kb on + strand at 803.047 kb on + strand at 803.048 kb on - strand at 803.054 kb on - strand, within LU632_RS03995 at 803.274 kb on + strand at 803.284 kb on - strand at 803.314 kb on + strand at 803.314 kb on + strand at 803.315 kb on - strand at 803.315 kb on - strand at 803.315 kb on - strand at 803.315 kb on - strand at 803.319 kb on - strand at 803.334 kb on - strand at 803.334 kb on - strand at 803.375 kb on + strand at 803.375 kb on + strand at 803.375 kb on + strand at 803.375 kb on + strand at 803.375 kb on + strand at 803.376 kb on - strand at 803.381 kb on + strand at 803.474 kb on - strand, within LU632_RS04005 at 803.532 kb on - strand, within LU632_RS04005 at 803.551 kb on + strand, within LU632_RS04005 at 803.552 kb on - strand, within LU632_RS04005 at 803.552 kb on - strand, within LU632_RS04005 at 803.564 kb on - strand, within LU632_RS04005 at 803.627 kb on + strand, within LU632_RS04005 at 803.627 kb on + strand, within LU632_RS04005 at 803.750 kb on - strand, within LU632_RS04010 at 803.760 kb on + strand, within LU632_RS04010 at 803.871 kb on + strand, within LU632_RS04010 at 803.875 kb on - strand, within LU632_RS04010 at 803.903 kb on + strand, within LU632_RS04010 at 803.995 kb on - strand, within LU632_RS04010 at 803.996 kb on + strand, within LU632_RS04010 at 804.000 kb on + strand, within LU632_RS04010 at 804.000 kb on + strand, within LU632_RS04010 at 804.001 kb on - strand, within LU632_RS04010 at 804.001 kb on - strand, within LU632_RS04010 at 804.001 kb on - strand, within LU632_RS04010 at 804.001 kb on - strand, within LU632_RS04010 at 804.007 kb on - strand, within LU632_RS04010 at 804.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 803,043 + +0.2 803,044 - -1.1 803,044 - +0.2 803,047 + +0.1 803,047 + -0.8 803,047 + -0.0 803,047 + +1.3 803,047 + +1.4 803,047 + -0.4 803,048 - -0.4 803,054 - LU632_RS03995 0.12 -0.0 803,274 + +1.8 803,284 - -0.1 803,314 + -0.9 803,314 + -0.9 803,315 - -0.1 803,315 - +0.8 803,315 - -0.5 803,315 - +0.7 803,319 - +0.6 803,334 - +1.0 803,334 - -0.0 803,375 + +0.2 803,375 + -0.4 803,375 + +0.6 803,375 + -0.1 803,375 + +0.7 803,376 - +0.9 803,381 + +0.2 803,474 - LU632_RS04005 0.38 -0.4 803,532 - LU632_RS04005 0.57 -0.1 803,551 + LU632_RS04005 0.63 +0.5 803,552 - LU632_RS04005 0.63 -0.0 803,552 - LU632_RS04005 0.63 -0.1 803,564 - LU632_RS04005 0.67 +0.5 803,627 + LU632_RS04005 0.88 -0.7 803,627 + LU632_RS04005 0.88 -0.2 803,750 - LU632_RS04010 0.18 -0.3 803,760 + LU632_RS04010 0.21 +0.5 803,871 + LU632_RS04010 0.47 -0.0 803,875 - LU632_RS04010 0.48 +0.7 803,903 + LU632_RS04010 0.55 +0.2 803,995 - LU632_RS04010 0.77 +0.4 803,996 + LU632_RS04010 0.77 +0.0 804,000 + LU632_RS04010 0.78 -0.1 804,000 + LU632_RS04010 0.78 +0.3 804,001 - LU632_RS04010 0.78 -0.1 804,001 - LU632_RS04010 0.78 -0.0 804,001 - LU632_RS04010 0.78 +0.1 804,001 - LU632_RS04010 0.78 +0.6 804,007 - LU632_RS04010 0.79 -0.1 804,057 - -0.1
Or see this region's nucleotide sequence