Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03715

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03705 and LU632_RS03710 are separated by 71 nucleotidesLU632_RS03710 and fhuF are separated by 71 nucleotidesfhuF and LU632_RS03720 overlap by 50 nucleotidesLU632_RS03720 and LU632_RS03725 are separated by 407 nucleotides LU632_RS03705: LU632_RS03705 - MFS transporter, at 741,190 to 742,319 _RS03705 LU632_RS03710: LU632_RS03710 - YbaK/EbsC family protein, at 742,391 to 742,864 _RS03710 LU632_RS03715: fhuF - siderophore-iron reductase FhuF, at 742,936 to 743,262 fhuF LU632_RS03720: LU632_RS03720 - hypothetical protein, at 743,213 to 743,656 _RS03720 LU632_RS03725: LU632_RS03725 - IS1 family transposase, at 744,064 to 744,761 _RS03725 Position (kb) 742 743 744Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 741.979 kb on + strand, within LU632_RS03705at 742.016 kb on + strand, within LU632_RS03705at 742.041 kb on + strand, within LU632_RS03705at 742.041 kb on + strand, within LU632_RS03705at 742.042 kb on - strand, within LU632_RS03705at 742.076 kb on + strand, within LU632_RS03705at 742.108 kb on - strand, within LU632_RS03705at 742.108 kb on - strand, within LU632_RS03705at 742.277 kb on - strandat 742.277 kb on - strandat 742.317 kb on + strandat 742.359 kb on + strandat 742.360 kb on - strandat 742.406 kb on + strandat 742.407 kb on - strandat 742.545 kb on - strand, within LU632_RS03710at 742.600 kb on + strand, within LU632_RS03710at 742.620 kb on - strand, within LU632_RS03710at 742.653 kb on - strand, within LU632_RS03710at 742.657 kb on + strand, within LU632_RS03710at 742.694 kb on - strand, within LU632_RS03710at 742.917 kb on + strandat 743.113 kb on + strand, within fhuFat 743.113 kb on + strand, within fhuFat 743.114 kb on - strand, within fhuFat 743.116 kb on + strand, within fhuFat 743.116 kb on + strand, within fhuFat 743.116 kb on + strand, within fhuFat 743.116 kb on + strand, within fhuFat 743.117 kb on - strand, within fhuFat 743.156 kb on + strand, within fhuFat 743.156 kb on + strand, within fhuFat 743.163 kb on + strand, within fhuFat 743.164 kb on - strand, within fhuFat 743.184 kb on + strand, within fhuFat 743.185 kb on - strand, within fhuFat 743.295 kb on + strand, within LU632_RS03720at 743.295 kb on + strand, within LU632_RS03720at 743.299 kb on + strand, within LU632_RS03720at 743.300 kb on - strand, within LU632_RS03720at 743.361 kb on + strand, within LU632_RS03720at 743.361 kb on + strand, within LU632_RS03720at 743.362 kb on - strand, within LU632_RS03720at 743.393 kb on - strand, within LU632_RS03720at 743.393 kb on - strand, within LU632_RS03720at 743.393 kb on - strand, within LU632_RS03720at 743.424 kb on + strand, within LU632_RS03720at 743.424 kb on + strand, within LU632_RS03720at 743.424 kb on + strand, within LU632_RS03720at 743.424 kb on + strand, within LU632_RS03720at 743.425 kb on - strand, within LU632_RS03720at 743.429 kb on - strand, within LU632_RS03720at 743.429 kb on - strand, within LU632_RS03720at 743.429 kb on - strand, within LU632_RS03720at 743.429 kb on - strand, within LU632_RS03720at 743.494 kb on + strand, within LU632_RS03720at 743.494 kb on + strand, within LU632_RS03720at 743.495 kb on - strand, within LU632_RS03720at 743.518 kb on + strand, within LU632_RS03720at 743.519 kb on - strand, within LU632_RS03720at 743.570 kb on + strand, within LU632_RS03720at 743.570 kb on + strand, within LU632_RS03720at 743.571 kb on - strand, within LU632_RS03720at 743.571 kb on - strand, within LU632_RS03720at 743.571 kb on - strand, within LU632_RS03720at 743.571 kb on - strand, within LU632_RS03720at 743.571 kb on - strand, within LU632_RS03720at 743.571 kb on - strand, within LU632_RS03720at 743.682 kb on + strandat 743.834 kb on - strandat 743.837 kb on + strandat 743.860 kb on + strandat 743.908 kb on - strandat 743.911 kb on + strandat 743.912 kb on - strandat 744.041 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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741,979 + LU632_RS03705 0.70 +0.1
742,016 + LU632_RS03705 0.73 -0.1
742,041 + LU632_RS03705 0.75 -0.3
742,041 + LU632_RS03705 0.75 +0.7
742,042 - LU632_RS03705 0.75 +0.1
742,076 + LU632_RS03705 0.78 -0.1
742,108 - LU632_RS03705 0.81 -0.0
742,108 - LU632_RS03705 0.81 -0.5
742,277 - +0.4
742,277 - +2.0
742,317 + +0.4
742,359 + -0.8
742,360 - -1.1
742,406 + -0.4
742,407 - -0.7
742,545 - LU632_RS03710 0.32 +0.7
742,600 + LU632_RS03710 0.44 -0.5
742,620 - LU632_RS03710 0.48 -0.1
742,653 - LU632_RS03710 0.55 +0.0
742,657 + LU632_RS03710 0.56 -0.7
742,694 - LU632_RS03710 0.64 +0.2
742,917 + +0.3
743,113 + fhuF LU632_RS03715 0.54 -0.3
743,113 + fhuF LU632_RS03715 0.54 -0.6
743,114 - fhuF LU632_RS03715 0.54 -2.9
743,116 + fhuF LU632_RS03715 0.55 -0.8
743,116 + fhuF LU632_RS03715 0.55 -0.8
743,116 + fhuF LU632_RS03715 0.55 -1.1
743,116 + fhuF LU632_RS03715 0.55 +0.1
743,117 - fhuF LU632_RS03715 0.55 +0.8
743,156 + fhuF LU632_RS03715 0.67 +0.7
743,156 + fhuF LU632_RS03715 0.67 -0.4
743,163 + fhuF LU632_RS03715 0.69 +0.1
743,164 - fhuF LU632_RS03715 0.70 +0.2
743,184 + fhuF LU632_RS03715 0.76 -0.6
743,185 - fhuF LU632_RS03715 0.76 -0.9
743,295 + LU632_RS03720 0.18 -1.3
743,295 + LU632_RS03720 0.18 -1.4
743,299 + LU632_RS03720 0.19 +0.6
743,300 - LU632_RS03720 0.20 -0.7
743,361 + LU632_RS03720 0.33 +0.2
743,361 + LU632_RS03720 0.33 +0.6
743,362 - LU632_RS03720 0.34 -0.1
743,393 - LU632_RS03720 0.41 -1.1
743,393 - LU632_RS03720 0.41 -1.1
743,393 - LU632_RS03720 0.41 -0.1
743,424 + LU632_RS03720 0.48 +1.5
743,424 + LU632_RS03720 0.48 +0.2
743,424 + LU632_RS03720 0.48 -0.2
743,424 + LU632_RS03720 0.48 +0.2
743,425 - LU632_RS03720 0.48 -1.3
743,429 - LU632_RS03720 0.49 +1.6
743,429 - LU632_RS03720 0.49 -1.3
743,429 - LU632_RS03720 0.49 +0.2
743,429 - LU632_RS03720 0.49 -0.1
743,494 + LU632_RS03720 0.63 +0.5
743,494 + LU632_RS03720 0.63 -1.0
743,495 - LU632_RS03720 0.64 -0.2
743,518 + LU632_RS03720 0.69 -0.2
743,519 - LU632_RS03720 0.69 -0.3
743,570 + LU632_RS03720 0.80 +0.7
743,570 + LU632_RS03720 0.80 +2.2
743,571 - LU632_RS03720 0.81 +0.7
743,571 - LU632_RS03720 0.81 -0.0
743,571 - LU632_RS03720 0.81 -0.2
743,571 - LU632_RS03720 0.81 +0.2
743,571 - LU632_RS03720 0.81 -0.3
743,571 - LU632_RS03720 0.81 -0.2
743,682 + +0.2
743,834 - -0.5
743,837 + -0.9
743,860 + -0.1
743,908 - +0.6
743,911 + +1.2
743,912 - +0.1
744,041 + +0.1

Or see this region's nucleotide sequence