Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03595 and lysB overlap by 4 nucleotides lysB and lysC overlap by 98 nucleotides lysC and LU632_RS03610 overlap by 38 nucleotides LU632_RS03610 and LU632_RS03615 overlap by 8 nucleotides LU632_RS03615 and LU632_RS03620 are separated by 68 nucleotides LU632_RS03620 and LU632_RS03625 overlap by 4 nucleotides
LU632_RS03595: LU632_RS03595 - lysozyme, at 725,530 to 726,039
_RS03595
LU632_RS03600: lysB - Rz-like lysis system protein LysB, at 726,036 to 726,449
lysB
LU632_RS03605: lysC - Rz1-like lysis system protein LysC, at 726,352 to 726,594
lysC
LU632_RS03610: LU632_RS03610 - phage tail protein, at 726,557 to 727,024
_RS03610
LU632_RS03615: LU632_RS03615 - phage virion morphogenesis protein, at 727,017 to 727,466
_RS03615
LU632_RS03620: LU632_RS03620 - phage baseplate assembly protein V, at 727,535 to 728,170
_RS03620
LU632_RS03625: LU632_RS03625 - GPW/gp25 family protein, at 728,167 to 728,514
_RS03625
Position (kb) 727
728 Strain fitness (log2 ratio) -1
0
1 at 726.043 kb on + strand at 726.043 kb on + strand at 726.044 kb on - strand at 726.110 kb on - strand, within lysB at 726.299 kb on - strand, within lysB at 726.302 kb on + strand, within lysB at 726.330 kb on + strand, within lysB at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.793 kb on + strand, within LU632_RS03610 at 726.835 kb on + strand, within LU632_RS03610 at 726.836 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.935 kb on + strand, within LU632_RS03610 at 726.935 kb on + strand, within LU632_RS03610 at 726.936 kb on - strand, within LU632_RS03610 at 726.986 kb on + strand at 726.987 kb on - strand at 726.987 kb on - strand at 727.009 kb on + strand at 727.009 kb on + strand at 727.010 kb on - strand at 727.027 kb on + strand at 727.260 kb on - strand, within LU632_RS03615 at 727.400 kb on - strand, within LU632_RS03615 at 727.468 kb on + strand at 727.468 kb on + strand at 727.469 kb on - strand at 727.534 kb on + strand at 727.540 kb on + strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.546 kb on - strand at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.661 kb on - strand, within LU632_RS03620 at 727.869 kb on - strand, within LU632_RS03620 at 727.893 kb on + strand, within LU632_RS03620 at 728.101 kb on + strand, within LU632_RS03620 at 728.229 kb on + strand, within LU632_RS03625 at 728.229 kb on + strand, within LU632_RS03625 at 728.230 kb on - strand, within LU632_RS03625 at 728.322 kb on + strand, within LU632_RS03625 at 728.322 kb on + strand, within LU632_RS03625 at 728.323 kb on - strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.407 kb on + strand, within LU632_RS03625 at 728.407 kb on - strand, within LU632_RS03625 at 728.446 kb on + strand, within LU632_RS03625 at 728.446 kb on + strand, within LU632_RS03625 at 728.446 kb on + strand, within LU632_RS03625 at 728.447 kb on - strand, within LU632_RS03625 at 728.447 kb on - strand, within LU632_RS03625 at 728.447 kb on - strand, within LU632_RS03625 at 728.454 kb on + strand, within LU632_RS03625
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 726,043 + -1.1 726,043 + -0.8 726,044 - -0.7 726,110 - lysB LU632_RS03600 0.18 +0.7 726,299 - lysB LU632_RS03600 0.64 +0.6 726,302 + lysB LU632_RS03600 0.64 +1.7 726,330 + lysB LU632_RS03600 0.71 +0.0 726,699 - LU632_RS03610 0.30 -0.7 726,699 - LU632_RS03610 0.30 +1.0 726,699 - LU632_RS03610 0.30 +0.9 726,699 - LU632_RS03610 0.30 +0.6 726,793 + LU632_RS03610 0.50 -0.3 726,835 + LU632_RS03610 0.59 +0.4 726,836 - LU632_RS03610 0.60 +1.3 726,927 - LU632_RS03610 0.79 +0.5 726,927 - LU632_RS03610 0.79 +0.1 726,927 - LU632_RS03610 0.79 +0.1 726,935 + LU632_RS03610 0.81 +0.1 726,935 + LU632_RS03610 0.81 -0.2 726,936 - LU632_RS03610 0.81 -0.8 726,986 + +0.0 726,987 - -0.3 726,987 - +0.2 727,009 + -0.1 727,009 + +0.8 727,010 - -0.1 727,027 + -0.4 727,260 - LU632_RS03615 0.54 -0.2 727,400 - LU632_RS03615 0.85 -0.6 727,468 + +0.5 727,468 + +0.3 727,469 - +1.3 727,534 + -0.3 727,540 + +1.3 727,541 - +0.7 727,541 - +1.0 727,541 - -0.4 727,541 - +0.1 727,541 - +0.4 727,546 - +0.5 727,660 + LU632_RS03620 0.20 -0.2 727,660 + LU632_RS03620 0.20 +0.3 727,660 + LU632_RS03620 0.20 -0.4 727,660 + LU632_RS03620 0.20 -0.2 727,661 - LU632_RS03620 0.20 +1.3 727,869 - LU632_RS03620 0.53 +0.3 727,893 + LU632_RS03620 0.56 -1.0 728,101 + LU632_RS03620 0.89 +0.5 728,229 + LU632_RS03625 0.18 +0.3 728,229 + LU632_RS03625 0.18 +0.1 728,230 - LU632_RS03625 0.18 +1.7 728,322 + LU632_RS03625 0.45 +0.0 728,322 + LU632_RS03625 0.45 -1.1 728,323 - LU632_RS03625 0.45 -0.7 728,406 + LU632_RS03625 0.69 -0.3 728,406 + LU632_RS03625 0.69 +0.3 728,406 + LU632_RS03625 0.69 -0.5 728,406 + LU632_RS03625 0.69 +0.3 728,407 + LU632_RS03625 0.69 -1.0 728,407 - LU632_RS03625 0.69 +0.7 728,446 + LU632_RS03625 0.80 +0.2 728,446 + LU632_RS03625 0.80 -0.7 728,446 + LU632_RS03625 0.80 +0.2 728,447 - LU632_RS03625 0.80 +0.1 728,447 - LU632_RS03625 0.80 +0.4 728,447 - LU632_RS03625 0.80 +0.7 728,454 + LU632_RS03625 0.82 +1.3
Or see this region's nucleotide sequence