Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01635 and LU632_RS01640 overlap by 4 nucleotides LU632_RS01640 and LU632_RS01645 overlap by 4 nucleotides LU632_RS01645 and LU632_RS01650 overlap by 14 nucleotides LU632_RS01650 and LU632_RS01655 overlap by 8 nucleotides LU632_RS01655 and LU632_RS01660 overlap by 11 nucleotides
LU632_RS01635: LU632_RS01635 - phage virion morphogenesis protein, at 324,191 to 324,829
_RS01635
LU632_RS01640: LU632_RS01640 - phage baseplate assembly protein V, at 324,826 to 325,401
_RS01640
LU632_RS01645: LU632_RS01645 - GPW/gp25 family protein, at 325,398 to 325,766
_RS01645
LU632_RS01650: LU632_RS01650 - baseplate J/gp47 family protein, at 325,753 to 326,649
_RS01650
LU632_RS01655: LU632_RS01655 - phage tail protein I, at 326,642 to 327,256
_RS01655
LU632_RS01660: LU632_RS01660 - phage tail protein, at 327,246 to 328,247
_RS01660
Position (kb) 325
326
327 Strain fitness (log2 ratio) -2
-1
0
1
2 at 325.023 kb on + strand, within LU632_RS01640 at 325.067 kb on - strand, within LU632_RS01640 at 325.194 kb on + strand, within LU632_RS01640 at 325.194 kb on + strand, within LU632_RS01640 at 325.194 kb on + strand, within LU632_RS01640 at 325.194 kb on + strand, within LU632_RS01640 at 325.195 kb on - strand, within LU632_RS01640 at 325.413 kb on - strand at 325.586 kb on + strand, within LU632_RS01645 at 325.587 kb on - strand, within LU632_RS01645 at 325.650 kb on - strand, within LU632_RS01645 at 325.650 kb on - strand, within LU632_RS01645 at 325.652 kb on + strand, within LU632_RS01645 at 325.652 kb on + strand, within LU632_RS01645 at 325.652 kb on + strand, within LU632_RS01645 at 325.653 kb on - strand, within LU632_RS01645 at 325.653 kb on - strand, within LU632_RS01645 at 325.795 kb on - strand at 325.922 kb on + strand, within LU632_RS01650 at 325.923 kb on - strand, within LU632_RS01650 at 326.176 kb on + strand, within LU632_RS01650 at 326.176 kb on + strand, within LU632_RS01650 at 326.177 kb on - strand, within LU632_RS01650 at 326.246 kb on + strand, within LU632_RS01650 at 326.246 kb on + strand, within LU632_RS01650 at 326.246 kb on + strand, within LU632_RS01650 at 326.247 kb on - strand, within LU632_RS01650 at 326.360 kb on + strand, within LU632_RS01650 at 326.360 kb on + strand, within LU632_RS01650 at 326.360 kb on + strand, within LU632_RS01650 at 326.361 kb on - strand, within LU632_RS01650 at 326.383 kb on + strand, within LU632_RS01650 at 326.383 kb on + strand, within LU632_RS01650 at 326.383 kb on + strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.385 kb on + strand, within LU632_RS01650 at 326.385 kb on + strand, within LU632_RS01650 at 326.385 kb on + strand, within LU632_RS01650 at 326.386 kb on - strand, within LU632_RS01650 at 326.386 kb on - strand, within LU632_RS01650 at 326.404 kb on + strand, within LU632_RS01650 at 326.404 kb on + strand, within LU632_RS01650 at 326.405 kb on - strand, within LU632_RS01650 at 326.405 kb on - strand, within LU632_RS01650 at 326.648 kb on - strand at 326.648 kb on - strand at 326.749 kb on + strand, within LU632_RS01655 at 327.179 kb on - strand, within LU632_RS01655 at 327.179 kb on - strand, within LU632_RS01655 at 327.201 kb on - strand at 327.201 kb on - strand at 327.202 kb on + strand at 327.255 kb on - strand at 327.255 kb on - strand at 327.259 kb on - strand at 327.453 kb on - strand, within LU632_RS01660 at 327.464 kb on + strand, within LU632_RS01660 at 327.573 kb on + strand, within LU632_RS01660
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 325,023 + LU632_RS01640 0.34 -0.2 325,067 - LU632_RS01640 0.42 -0.2 325,194 + LU632_RS01640 0.64 +0.9 325,194 + LU632_RS01640 0.64 +0.1 325,194 + LU632_RS01640 0.64 +0.4 325,194 + LU632_RS01640 0.64 -0.9 325,195 - LU632_RS01640 0.64 -0.8 325,413 - -0.5 325,586 + LU632_RS01645 0.51 -0.3 325,587 - LU632_RS01645 0.51 -0.5 325,650 - LU632_RS01645 0.68 +0.2 325,650 - LU632_RS01645 0.68 -0.9 325,652 + LU632_RS01645 0.69 -0.2 325,652 + LU632_RS01645 0.69 +0.6 325,652 + LU632_RS01645 0.69 -0.3 325,653 - LU632_RS01645 0.69 +0.5 325,653 - LU632_RS01645 0.69 -0.8 325,795 - -0.0 325,922 + LU632_RS01650 0.19 +1.0 325,923 - LU632_RS01650 0.19 +0.1 326,176 + LU632_RS01650 0.47 -0.6 326,176 + LU632_RS01650 0.47 -0.0 326,177 - LU632_RS01650 0.47 +0.4 326,246 + LU632_RS01650 0.55 +0.1 326,246 + LU632_RS01650 0.55 -0.2 326,246 + LU632_RS01650 0.55 -0.4 326,247 - LU632_RS01650 0.55 -0.2 326,360 + LU632_RS01650 0.68 -0.6 326,360 + LU632_RS01650 0.68 -0.3 326,360 + LU632_RS01650 0.68 +0.0 326,361 - LU632_RS01650 0.68 -0.6 326,383 + LU632_RS01650 0.70 -0.4 326,383 + LU632_RS01650 0.70 -0.3 326,383 + LU632_RS01650 0.70 -0.8 326,384 - LU632_RS01650 0.70 -2.4 326,384 - LU632_RS01650 0.70 +0.9 326,384 - LU632_RS01650 0.70 -0.6 326,384 - LU632_RS01650 0.70 +0.0 326,384 - LU632_RS01650 0.70 -0.5 326,385 + LU632_RS01650 0.70 -0.3 326,385 + LU632_RS01650 0.70 +0.1 326,385 + LU632_RS01650 0.70 -1.9 326,386 - LU632_RS01650 0.71 +0.4 326,386 - LU632_RS01650 0.71 +0.2 326,404 + LU632_RS01650 0.73 -0.6 326,404 + LU632_RS01650 0.73 +1.2 326,405 - LU632_RS01650 0.73 -0.1 326,405 - LU632_RS01650 0.73 -0.2 326,648 - -0.4 326,648 - -0.5 326,749 + LU632_RS01655 0.17 +0.8 327,179 - LU632_RS01655 0.87 +1.9 327,179 - LU632_RS01655 0.87 -0.5 327,201 - -1.1 327,201 - -0.8 327,202 + +0.1 327,255 - -0.3 327,255 - +0.7 327,259 - -0.5 327,453 - LU632_RS01660 0.21 -0.2 327,464 + LU632_RS01660 0.22 -0.5 327,573 + LU632_RS01660 0.33 -1.2
Or see this region's nucleotide sequence