Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00650 and LU632_RS00655 overlap by 1 nucleotides LU632_RS00655 and LU632_RS00660 overlap by 7 nucleotides LU632_RS00660 and LU632_RS00665 are separated by 22 nucleotides
LU632_RS00650: LU632_RS00650 - OmpA family protein, at 133,474 to 134,958
_RS00650
LU632_RS00655: LU632_RS00655 - DotU family type IV/VI secretion system protein, at 134,958 to 135,569
_RS00655
LU632_RS00660: LU632_RS00660 - UDP-N-acetylglucosamine-transferase, at 135,563 to 136,903
_RS00660
LU632_RS00665: LU632_RS00665 - fimbrial protein, at 136,926 to 137,927
_RS00665
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1 at 134.581 kb on + strand, within LU632_RS00650 at 134.591 kb on + strand, within LU632_RS00650 at 134.591 kb on + strand, within LU632_RS00650 at 134.592 kb on - strand, within LU632_RS00650 at 134.592 kb on - strand, within LU632_RS00650 at 134.593 kb on + strand, within LU632_RS00650 at 134.593 kb on + strand, within LU632_RS00650 at 134.596 kb on - strand, within LU632_RS00650 at 134.682 kb on + strand, within LU632_RS00650 at 135.390 kb on - strand, within LU632_RS00655 at 135.530 kb on + strand at 136.083 kb on - strand, within LU632_RS00660 at 136.194 kb on - strand, within LU632_RS00660 at 136.196 kb on - strand, within LU632_RS00660 at 136.196 kb on - strand, within LU632_RS00660 at 136.646 kb on - strand, within LU632_RS00660 at 136.778 kb on - strand at 136.790 kb on - strand at 137.073 kb on - strand, within LU632_RS00665 at 137.109 kb on - strand, within LU632_RS00665 at 137.219 kb on - strand, within LU632_RS00665 at 137.243 kb on + strand, within LU632_RS00665 at 137.376 kb on + strand, within LU632_RS00665 at 137.417 kb on - strand, within LU632_RS00665 at 137.435 kb on + strand, within LU632_RS00665 at 137.439 kb on + strand, within LU632_RS00665 at 137.439 kb on + strand, within LU632_RS00665 at 137.439 kb on + strand, within LU632_RS00665 at 137.440 kb on - strand, within LU632_RS00665 at 137.651 kb on - strand, within LU632_RS00665 at 137.651 kb on - strand, within LU632_RS00665 at 137.652 kb on + strand, within LU632_RS00665 at 137.772 kb on - strand, within LU632_RS00665 at 137.805 kb on - strand, within LU632_RS00665 at 137.840 kb on + strand at 137.840 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 134,581 + LU632_RS00650 0.75 -0.4 134,591 + LU632_RS00650 0.75 +1.4 134,591 + LU632_RS00650 0.75 -0.2 134,592 - LU632_RS00650 0.75 -0.3 134,592 - LU632_RS00650 0.75 -0.5 134,593 + LU632_RS00650 0.75 -0.3 134,593 + LU632_RS00650 0.75 +0.9 134,596 - LU632_RS00650 0.76 -0.4 134,682 + LU632_RS00650 0.81 +0.5 135,390 - LU632_RS00655 0.71 -0.2 135,530 + -0.4 136,083 - LU632_RS00660 0.39 +0.9 136,194 - LU632_RS00660 0.47 +1.4 136,196 - LU632_RS00660 0.47 -0.9 136,196 - LU632_RS00660 0.47 -0.4 136,646 - LU632_RS00660 0.81 -0.3 136,778 - -0.3 136,790 - -0.9 137,073 - LU632_RS00665 0.15 +0.8 137,109 - LU632_RS00665 0.18 +0.3 137,219 - LU632_RS00665 0.29 -0.4 137,243 + LU632_RS00665 0.32 -0.1 137,376 + LU632_RS00665 0.45 +0.1 137,417 - LU632_RS00665 0.49 +0.7 137,435 + LU632_RS00665 0.51 -1.9 137,439 + LU632_RS00665 0.51 -1.0 137,439 + LU632_RS00665 0.51 -1.5 137,439 + LU632_RS00665 0.51 +0.4 137,440 - LU632_RS00665 0.51 +1.7 137,651 - LU632_RS00665 0.72 -0.5 137,651 - LU632_RS00665 0.72 -0.1 137,652 + LU632_RS00665 0.72 -0.1 137,772 - LU632_RS00665 0.84 +0.5 137,805 - LU632_RS00665 0.88 -0.5 137,840 + -0.4 137,840 + +0.8
Or see this region's nucleotide sequence