Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00610 and kduD are separated by 42 nucleotides kduD and LU632_RS00620 are separated by 13 nucleotides LU632_RS00620 and LU632_RS00625 are separated by 22 nucleotides
LU632_RS00610: LU632_RS00610 - RpiB/LacA/LacB family sugar-phosphate isomerase, at 125,095 to 125,736
_RS00610
LU632_RS00615: kduD - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 125,779 to 126,540
kduD
LU632_RS00620: LU632_RS00620 - glycoside hydrolase family 88 protein, at 126,554 to 127,693
_RS00620
LU632_RS00625: LU632_RS00625 - MFS transporter, at 127,716 to 129,320
_RS00625
Position (kb) 126
127
128 Strain fitness (log2 ratio) -1
0
1
2 at 125.578 kb on - strand, within LU632_RS00610 at 125.594 kb on + strand, within LU632_RS00610 at 125.595 kb on - strand, within LU632_RS00610 at 125.634 kb on + strand, within LU632_RS00610 at 125.634 kb on + strand, within LU632_RS00610 at 125.635 kb on - strand, within LU632_RS00610 at 125.635 kb on - strand, within LU632_RS00610 at 125.635 kb on - strand, within LU632_RS00610 at 125.639 kb on - strand, within LU632_RS00610 at 125.672 kb on - strand at 125.825 kb on - strand at 125.827 kb on - strand at 125.827 kb on - strand at 125.827 kb on - strand at 125.827 kb on - strand at 125.827 kb on - strand at 125.828 kb on + strand at 125.828 kb on + strand at 125.828 kb on + strand at 125.829 kb on - strand at 125.829 kb on - strand at 126.000 kb on + strand, within kduD at 126.000 kb on + strand, within kduD at 126.000 kb on + strand, within kduD at 126.001 kb on - strand, within kduD at 126.005 kb on + strand, within kduD at 126.006 kb on - strand, within kduD at 126.578 kb on + strand at 126.622 kb on + strand at 126.623 kb on - strand at 126.706 kb on + strand, within LU632_RS00620 at 126.706 kb on + strand, within LU632_RS00620 at 126.706 kb on + strand, within LU632_RS00620 at 126.706 kb on + strand, within LU632_RS00620 at 126.707 kb on - strand, within LU632_RS00620 at 126.707 kb on - strand, within LU632_RS00620 at 126.707 kb on - strand, within LU632_RS00620 at 126.750 kb on + strand, within LU632_RS00620 at 126.750 kb on + strand, within LU632_RS00620 at 126.751 kb on - strand, within LU632_RS00620 at 126.766 kb on - strand, within LU632_RS00620 at 126.829 kb on - strand, within LU632_RS00620 at 126.997 kb on + strand, within LU632_RS00620 at 126.997 kb on + strand, within LU632_RS00620 at 127.085 kb on + strand, within LU632_RS00620 at 127.086 kb on - strand, within LU632_RS00620 at 127.086 kb on - strand, within LU632_RS00620 at 127.113 kb on + strand, within LU632_RS00620 at 127.131 kb on + strand, within LU632_RS00620 at 127.132 kb on - strand, within LU632_RS00620 at 127.132 kb on - strand, within LU632_RS00620 at 127.462 kb on - strand, within LU632_RS00620 at 127.464 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.471 kb on - strand, within LU632_RS00620 at 127.471 kb on - strand, within LU632_RS00620 at 127.474 kb on + strand, within LU632_RS00620 at 127.475 kb on - strand, within LU632_RS00620 at 127.606 kb on + strand at 127.612 kb on + strand at 127.676 kb on + strand at 127.683 kb on + strand at 127.685 kb on + strand at 127.685 kb on + strand at 127.685 kb on + strand at 127.686 kb on - strand at 127.686 kb on - strand at 127.686 kb on - strand at 127.702 kb on - strand at 127.827 kb on - strand at 127.983 kb on - strand, within LU632_RS00625 at 127.998 kb on - strand, within LU632_RS00625 at 128.055 kb on - strand, within LU632_RS00625 at 128.168 kb on + strand, within LU632_RS00625 at 128.181 kb on + strand, within LU632_RS00625 at 128.227 kb on - strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.236 kb on + strand, within LU632_RS00625 at 128.237 kb on - strand, within LU632_RS00625 at 128.240 kb on + strand, within LU632_RS00625 at 128.241 kb on - strand, within LU632_RS00625 at 128.254 kb on + strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.258 kb on + strand, within LU632_RS00625 at 128.258 kb on + strand, within LU632_RS00625 at 128.259 kb on - strand, within LU632_RS00625 at 128.259 kb on - strand, within LU632_RS00625 at 128.259 kb on - strand, within LU632_RS00625 at 128.333 kb on - strand, within LU632_RS00625 at 128.347 kb on + strand, within LU632_RS00625 at 128.347 kb on + strand, within LU632_RS00625 at 128.374 kb on - strand, within LU632_RS00625 at 128.414 kb on + strand, within LU632_RS00625 at 128.415 kb on - strand, within LU632_RS00625 at 128.451 kb on + strand, within LU632_RS00625 at 128.452 kb on - strand, within LU632_RS00625 at 128.452 kb on - strand, within LU632_RS00625 at 128.505 kb on + strand, within LU632_RS00625 at 128.506 kb on - strand, within LU632_RS00625 at 128.511 kb on + strand, within LU632_RS00625 at 128.519 kb on - strand, within LU632_RS00625 at 128.521 kb on + strand, within LU632_RS00625 at 128.521 kb on + strand, within LU632_RS00625 at 128.522 kb on - strand, within LU632_RS00625 at 128.526 kb on - strand, within LU632_RS00625 at 128.556 kb on - strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.558 kb on - strand, within LU632_RS00625 at 128.558 kb on - strand, within LU632_RS00625 at 128.569 kb on + strand, within LU632_RS00625 at 128.569 kb on + strand, within LU632_RS00625 at 128.570 kb on - strand, within LU632_RS00625 at 128.570 kb on - strand, within LU632_RS00625 at 128.600 kb on + strand, within LU632_RS00625 at 128.600 kb on + strand, within LU632_RS00625 at 128.601 kb on - strand, within LU632_RS00625 at 128.604 kb on + strand, within LU632_RS00625 at 128.604 kb on + strand, within LU632_RS00625 at 128.604 kb on + strand, within LU632_RS00625 at 128.605 kb on - strand, within LU632_RS00625 at 128.605 kb on - strand, within LU632_RS00625 at 128.627 kb on + strand, within LU632_RS00625 at 128.637 kb on + strand, within LU632_RS00625 at 128.637 kb on + strand, within LU632_RS00625 at 128.638 kb on - strand, within LU632_RS00625
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 125,578 - LU632_RS00610 0.75 +0.9 125,594 + LU632_RS00610 0.78 +0.6 125,595 - LU632_RS00610 0.78 +0.5 125,634 + LU632_RS00610 0.84 +0.2 125,634 + LU632_RS00610 0.84 +0.6 125,635 - LU632_RS00610 0.84 -0.0 125,635 - LU632_RS00610 0.84 -0.8 125,635 - LU632_RS00610 0.84 -0.1 125,639 - LU632_RS00610 0.85 -0.0 125,672 - -1.2 125,825 - -0.1 125,827 - +0.9 125,827 - -0.1 125,827 - +0.2 125,827 - +0.4 125,827 - -0.9 125,828 + -0.5 125,828 + -0.3 125,828 + -0.2 125,829 - -0.8 125,829 - -0.3 126,000 + kduD LU632_RS00615 0.29 -0.0 126,000 + kduD LU632_RS00615 0.29 -0.2 126,000 + kduD LU632_RS00615 0.29 -0.2 126,001 - kduD LU632_RS00615 0.29 -0.2 126,005 + kduD LU632_RS00615 0.30 -0.1 126,006 - kduD LU632_RS00615 0.30 +0.0 126,578 + +0.7 126,622 + -0.4 126,623 - +1.4 126,706 + LU632_RS00620 0.13 +0.7 126,706 + LU632_RS00620 0.13 +0.2 126,706 + LU632_RS00620 0.13 +1.0 126,706 + LU632_RS00620 0.13 +2.4 126,707 - LU632_RS00620 0.13 -0.0 126,707 - LU632_RS00620 0.13 -0.2 126,707 - LU632_RS00620 0.13 +1.7 126,750 + LU632_RS00620 0.17 +0.5 126,750 + LU632_RS00620 0.17 -0.6 126,751 - LU632_RS00620 0.17 -0.3 126,766 - LU632_RS00620 0.19 -0.4 126,829 - LU632_RS00620 0.24 +0.4 126,997 + LU632_RS00620 0.39 -0.6 126,997 + LU632_RS00620 0.39 +0.2 127,085 + LU632_RS00620 0.47 -0.0 127,086 - LU632_RS00620 0.47 -0.0 127,086 - LU632_RS00620 0.47 -0.2 127,113 + LU632_RS00620 0.49 -0.9 127,131 + LU632_RS00620 0.51 +1.6 127,132 - LU632_RS00620 0.51 +1.4 127,132 - LU632_RS00620 0.51 +0.4 127,462 - LU632_RS00620 0.80 -0.5 127,464 + LU632_RS00620 0.80 +0.4 127,470 + LU632_RS00620 0.80 -0.1 127,470 + LU632_RS00620 0.80 +1.7 127,470 + LU632_RS00620 0.80 +0.4 127,470 + LU632_RS00620 0.80 -0.2 127,470 + LU632_RS00620 0.80 -0.3 127,470 + LU632_RS00620 0.80 +0.4 127,471 - LU632_RS00620 0.80 +0.2 127,471 - LU632_RS00620 0.80 -0.4 127,474 + LU632_RS00620 0.81 -1.2 127,475 - LU632_RS00620 0.81 -0.6 127,606 + +0.7 127,612 + +1.0 127,676 + -0.8 127,683 + -1.6 127,685 + -0.2 127,685 + -1.0 127,685 + -0.4 127,686 - +0.4 127,686 - +0.1 127,686 - +0.4 127,702 - -0.2 127,827 - -0.3 127,983 - LU632_RS00625 0.17 -0.4 127,998 - LU632_RS00625 0.18 +0.8 128,055 - LU632_RS00625 0.21 -1.0 128,168 + LU632_RS00625 0.28 -0.5 128,181 + LU632_RS00625 0.29 -1.3 128,227 - LU632_RS00625 0.32 +0.6 128,230 + LU632_RS00625 0.32 -0.0 128,230 + LU632_RS00625 0.32 +0.8 128,230 + LU632_RS00625 0.32 -0.6 128,230 + LU632_RS00625 0.32 -0.2 128,230 + LU632_RS00625 0.32 +1.0 128,230 + LU632_RS00625 0.32 -0.2 128,230 + LU632_RS00625 0.32 +0.2 128,230 + LU632_RS00625 0.32 -0.2 128,231 - LU632_RS00625 0.32 +1.0 128,231 - LU632_RS00625 0.32 +0.1 128,231 - LU632_RS00625 0.32 +0.2 128,231 - LU632_RS00625 0.32 +0.4 128,231 - LU632_RS00625 0.32 +0.4 128,236 + LU632_RS00625 0.32 +0.2 128,237 - LU632_RS00625 0.32 -0.3 128,240 + LU632_RS00625 0.33 +1.2 128,241 - LU632_RS00625 0.33 +0.7 128,254 + LU632_RS00625 0.34 -0.4 128,255 - LU632_RS00625 0.34 +1.1 128,255 - LU632_RS00625 0.34 -0.5 128,255 - LU632_RS00625 0.34 -0.0 128,255 - LU632_RS00625 0.34 +1.4 128,258 + LU632_RS00625 0.34 +0.6 128,258 + LU632_RS00625 0.34 -0.1 128,259 - LU632_RS00625 0.34 -0.5 128,259 - LU632_RS00625 0.34 -0.1 128,259 - LU632_RS00625 0.34 -0.2 128,333 - LU632_RS00625 0.38 -0.9 128,347 + LU632_RS00625 0.39 +0.5 128,347 + LU632_RS00625 0.39 +0.7 128,374 - LU632_RS00625 0.41 -0.0 128,414 + LU632_RS00625 0.43 -0.2 128,415 - LU632_RS00625 0.44 +1.4 128,451 + LU632_RS00625 0.46 +0.6 128,452 - LU632_RS00625 0.46 +0.4 128,452 - LU632_RS00625 0.46 -0.0 128,505 + LU632_RS00625 0.49 +0.3 128,506 - LU632_RS00625 0.49 +0.1 128,511 + LU632_RS00625 0.50 -0.6 128,519 - LU632_RS00625 0.50 -1.4 128,521 + LU632_RS00625 0.50 -0.9 128,521 + LU632_RS00625 0.50 +2.0 128,522 - LU632_RS00625 0.50 -0.0 128,526 - LU632_RS00625 0.50 +0.1 128,556 - LU632_RS00625 0.52 -0.8 128,557 + LU632_RS00625 0.52 +1.4 128,557 + LU632_RS00625 0.52 +1.2 128,557 + LU632_RS00625 0.52 -0.1 128,557 + LU632_RS00625 0.52 -0.0 128,558 - LU632_RS00625 0.52 +0.5 128,558 - LU632_RS00625 0.52 +0.1 128,569 + LU632_RS00625 0.53 +0.4 128,569 + LU632_RS00625 0.53 +0.4 128,570 - LU632_RS00625 0.53 +0.4 128,570 - LU632_RS00625 0.53 +0.5 128,600 + LU632_RS00625 0.55 +0.4 128,600 + LU632_RS00625 0.55 +0.1 128,601 - LU632_RS00625 0.55 +0.2 128,604 + LU632_RS00625 0.55 -0.5 128,604 + LU632_RS00625 0.55 +0.9 128,604 + LU632_RS00625 0.55 -0.1 128,605 - LU632_RS00625 0.55 -0.2 128,605 - LU632_RS00625 0.55 -0.2 128,627 + LU632_RS00625 0.57 +0.8 128,637 + LU632_RS00625 0.57 +0.4 128,637 + LU632_RS00625 0.57 +0.0 128,638 - LU632_RS00625 0.57 +1.4
Or see this region's nucleotide sequence