Strain Fitness in Pseudomonas sp. RS175 around PFR28_00773

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00772 and PFR28_00773 are separated by 103 nucleotidesPFR28_00773 and PFR28_00774 are separated by 139 nucleotidesPFR28_00774 and PFR28_00775 are separated by 204 nucleotides PFR28_00772: PFR28_00772 - hypothetical protein, at 827,147 to 828,319 _00772 PFR28_00773: PFR28_00773 - HTH-type transcriptional regulator GltR, at 828,423 to 829,316 _00773 PFR28_00774: PFR28_00774 - hypothetical protein, at 829,456 to 829,584 _00774 PFR28_00775: PFR28_00775 - Osmoregulated proline transporter OpuE, at 829,789 to 831,177 _00775 Position (kb) 828 829 830Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 827.503 kb on + strand, within PFR28_00772at 827.503 kb on + strand, within PFR28_00772at 827.670 kb on + strand, within PFR28_00772at 827.671 kb on - strand, within PFR28_00772at 827.671 kb on - strand, within PFR28_00772at 827.671 kb on - strand, within PFR28_00772at 827.682 kb on + strand, within PFR28_00772at 827.682 kb on + strand, within PFR28_00772at 827.682 kb on + strand, within PFR28_00772at 827.683 kb on - strand, within PFR28_00772at 827.683 kb on - strand, within PFR28_00772at 827.683 kb on - strand, within PFR28_00772at 827.691 kb on + strand, within PFR28_00772at 827.692 kb on - strand, within PFR28_00772at 827.692 kb on - strand, within PFR28_00772at 827.692 kb on - strand, within PFR28_00772at 827.820 kb on + strand, within PFR28_00772at 827.820 kb on + strand, within PFR28_00772at 827.820 kb on + strand, within PFR28_00772at 828.098 kb on + strand, within PFR28_00772at 828.098 kb on + strand, within PFR28_00772at 828.110 kb on + strand, within PFR28_00772at 828.160 kb on - strand, within PFR28_00772at 828.160 kb on - strand, within PFR28_00772at 828.168 kb on + strand, within PFR28_00772at 828.168 kb on + strand, within PFR28_00772at 828.169 kb on - strand, within PFR28_00772at 828.169 kb on - strand, within PFR28_00772at 828.169 kb on - strand, within PFR28_00772at 828.169 kb on - strand, within PFR28_00772at 828.169 kb on - strand, within PFR28_00772at 828.233 kb on + strandat 828.233 kb on + strandat 828.233 kb on + strandat 828.234 kb on - strandat 828.234 kb on - strandat 828.234 kb on - strandat 828.245 kb on - strandat 828.358 kb on - strandat 828.358 kb on - strandat 828.358 kb on - strandat 828.390 kb on + strandat 828.518 kb on - strand, within PFR28_00773at 828.704 kb on + strand, within PFR28_00773at 828.705 kb on - strand, within PFR28_00773at 828.705 kb on - strand, within PFR28_00773at 828.711 kb on + strand, within PFR28_00773at 828.711 kb on + strand, within PFR28_00773at 828.711 kb on + strand, within PFR28_00773at 828.711 kb on + strand, within PFR28_00773at 828.711 kb on + strand, within PFR28_00773at 828.711 kb on + strand, within PFR28_00773at 828.712 kb on - strand, within PFR28_00773at 828.712 kb on - strand, within PFR28_00773at 828.712 kb on - strand, within PFR28_00773at 828.712 kb on - strand, within PFR28_00773at 828.712 kb on - strand, within PFR28_00773at 828.729 kb on + strand, within PFR28_00773at 828.730 kb on - strand, within PFR28_00773at 828.753 kb on + strand, within PFR28_00773at 828.753 kb on + strand, within PFR28_00773at 828.754 kb on - strand, within PFR28_00773at 828.754 kb on - strand, within PFR28_00773at 828.754 kb on - strand, within PFR28_00773at 828.765 kb on + strand, within PFR28_00773at 828.765 kb on + strand, within PFR28_00773at 828.765 kb on + strand, within PFR28_00773at 828.766 kb on - strand, within PFR28_00773at 828.961 kb on + strand, within PFR28_00773at 828.961 kb on + strand, within PFR28_00773at 828.961 kb on + strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 829.075 kb on - strand, within PFR28_00773at 829.075 kb on - strand, within PFR28_00773at 829.319 kb on + strandat 829.319 kb on + strandat 829.320 kb on - strandat 829.363 kb on + strandat 829.363 kb on + strandat 829.364 kb on - strandat 829.364 kb on - strandat 829.364 kb on - strandat 829.382 kb on - strandat 829.382 kb on - strandat 829.394 kb on + strandat 829.394 kb on + strandat 829.394 kb on + strandat 829.395 kb on - strandat 829.398 kb on - strandat 829.398 kb on - strandat 829.398 kb on - strandat 829.398 kb on - strandat 829.398 kb on - strandat 829.398 kb on - strandat 829.398 kb on - strandat 829.583 kb on - strandat 829.586 kb on + strandat 829.586 kb on + strandat 829.586 kb on + strandat 829.587 kb on - strandat 829.587 kb on - strandat 829.587 kb on - strandat 829.587 kb on - strandat 829.587 kb on - strandat 829.587 kb on - strandat 829.730 kb on - strandat 829.730 kb on - strandat 829.730 kb on - strandat 829.730 kb on - strandat 829.730 kb on - strandat 829.730 kb on - strandat 829.808 kb on - strandat 829.808 kb on - strandat 829.871 kb on + strandat 829.871 kb on + strandat 829.871 kb on + strandat 829.872 kb on - strandat 829.872 kb on - strandat 829.872 kb on - strandat 829.872 kb on - strandat 829.874 kb on + strandat 829.875 kb on - strandat 829.875 kb on - strandat 829.875 kb on - strandat 829.875 kb on - strandat 829.875 kb on - strandat 829.884 kb on + strandat 829.885 kb on - strandat 829.885 kb on - strandat 829.982 kb on + strand, within PFR28_00775at 829.983 kb on - strand, within PFR28_00775at 829.983 kb on - strand, within PFR28_00775at 830.030 kb on + strand, within PFR28_00775at 830.030 kb on + strand, within PFR28_00775

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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827,503 + PFR28_00772 0.30 -2.8
827,503 + PFR28_00772 0.30 +0.4
827,670 + PFR28_00772 0.45 -1.7
827,671 - PFR28_00772 0.45 +0.1
827,671 - PFR28_00772 0.45 -1.1
827,671 - PFR28_00772 0.45 -1.2
827,682 + PFR28_00772 0.46 +0.4
827,682 + PFR28_00772 0.46 +0.5
827,682 + PFR28_00772 0.46 -0.4
827,683 - PFR28_00772 0.46 +1.1
827,683 - PFR28_00772 0.46 -0.5
827,683 - PFR28_00772 0.46 +0.6
827,691 + PFR28_00772 0.46 -3.1
827,692 - PFR28_00772 0.46 +0.9
827,692 - PFR28_00772 0.46 -1.5
827,692 - PFR28_00772 0.46 -0.6
827,820 + PFR28_00772 0.57 +0.4
827,820 + PFR28_00772 0.57 -2.0
827,820 + PFR28_00772 0.57 -1.3
828,098 + PFR28_00772 0.81 +1.2
828,098 + PFR28_00772 0.81 -1.2
828,110 + PFR28_00772 0.82 -0.7
828,160 - PFR28_00772 0.86 -0.8
828,160 - PFR28_00772 0.86 +0.8
828,168 + PFR28_00772 0.87 -1.0
828,168 + PFR28_00772 0.87 +1.2
828,169 - PFR28_00772 0.87 +0.6
828,169 - PFR28_00772 0.87 -0.2
828,169 - PFR28_00772 0.87 -1.1
828,169 - PFR28_00772 0.87 -0.7
828,169 - PFR28_00772 0.87 -0.8
828,233 + +2.6
828,233 + +1.2
828,233 + +0.1
828,234 - +1.4
828,234 - +1.5
828,234 - +0.9
828,245 - +0.5
828,358 - +5.0
828,358 - +1.0
828,358 - +0.4
828,390 + -1.4
828,518 - PFR28_00773 0.11 -3.5
828,704 + PFR28_00773 0.31 +0.4
828,705 - PFR28_00773 0.32 +0.3
828,705 - PFR28_00773 0.32 -0.4
828,711 + PFR28_00773 0.32 -2.9
828,711 + PFR28_00773 0.32 +0.7
828,711 + PFR28_00773 0.32 -0.2
828,711 + PFR28_00773 0.32 -2.2
828,711 + PFR28_00773 0.32 +0.9
828,711 + PFR28_00773 0.32 +0.3
828,712 - PFR28_00773 0.32 +0.5
828,712 - PFR28_00773 0.32 -0.1
828,712 - PFR28_00773 0.32 -1.1
828,712 - PFR28_00773 0.32 +0.3
828,712 - PFR28_00773 0.32 -1.1
828,729 + PFR28_00773 0.34 -2.0
828,730 - PFR28_00773 0.34 +0.7
828,753 + PFR28_00773 0.37 -0.6
828,753 + PFR28_00773 0.37 -0.2
828,754 - PFR28_00773 0.37 -1.6
828,754 - PFR28_00773 0.37 -0.6
828,754 - PFR28_00773 0.37 +0.0
828,765 + PFR28_00773 0.38 -1.1
828,765 + PFR28_00773 0.38 -2.0
828,765 + PFR28_00773 0.38 -0.9
828,766 - PFR28_00773 0.38 +1.6
828,961 + PFR28_00773 0.60 -0.5
828,961 + PFR28_00773 0.60 -0.5
828,961 + PFR28_00773 0.60 +0.3
828,962 - PFR28_00773 0.60 +2.1
828,962 - PFR28_00773 0.60 -2.0
828,962 - PFR28_00773 0.60 -0.2
828,962 - PFR28_00773 0.60 -2.7
828,962 - PFR28_00773 0.60 -1.1
828,962 - PFR28_00773 0.60 -2.4
828,962 - PFR28_00773 0.60 -0.4
829,075 - PFR28_00773 0.73 -2.3
829,075 - PFR28_00773 0.73 -0.8
829,319 + -1.8
829,319 + +0.2
829,320 - +0.3
829,363 + +0.2
829,363 + -3.4
829,364 - -0.1
829,364 - -2.0
829,364 - +0.6
829,382 - +0.4
829,382 - -0.1
829,394 + +0.9
829,394 + +0.6
829,394 + -1.5
829,395 - -0.6
829,398 - +0.8
829,398 - +0.9
829,398 - -1.3
829,398 - +0.6
829,398 - +0.4
829,398 - +1.4
829,398 - +0.5
829,583 - +0.8
829,586 + +0.5
829,586 + -2.5
829,586 + +0.3
829,587 - -0.7
829,587 - +0.1
829,587 - -0.2
829,587 - +1.1
829,587 - -1.1
829,587 - +0.7
829,730 - -0.2
829,730 - -1.2
829,730 - -0.8
829,730 - +0.6
829,730 - -0.4
829,730 - +0.6
829,808 - +1.3
829,808 - -0.1
829,871 + -0.7
829,871 + +2.9
829,871 + -1.5
829,872 - +0.9
829,872 - +1.0
829,872 - +0.6
829,872 - -3.1
829,874 + +1.5
829,875 - -0.5
829,875 - +0.3
829,875 - +0.4
829,875 - -1.0
829,875 - +1.1
829,884 + +1.3
829,885 - -0.8
829,885 - +1.5
829,982 + PFR28_00775 0.14 -1.7
829,983 - PFR28_00775 0.14 -2.6
829,983 - PFR28_00775 0.14 -1.1
830,030 + PFR28_00775 0.17 -1.0
830,030 + PFR28_00775 0.17 -0.9

Or see this region's nucleotide sequence