Strain Fitness in Pseudomonas sp. RS175 around PFR28_00574

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00573 and PFR28_00574 overlap by 14 nucleotidesPFR28_00574 and PFR28_00575 are separated by 17 nucleotidesPFR28_00575 and PFR28_00576 are separated by 146 nucleotides PFR28_00573: PFR28_00573 - Glucose-6-phosphate 1-dehydrogenase, at 614,684 to 616,153 _00573 PFR28_00574: PFR28_00574 - 6-phosphogluconolactonase, at 616,140 to 616,853 _00574 PFR28_00575: PFR28_00575 - 2-dehydro-3-deoxy-phosphogluconate aldolase, at 616,871 to 617,536 _00575 PFR28_00576: PFR28_00576 - Isopenicillin N epimerase, at 617,683 to 618,870 _00576 Position (kb) 616 617Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 615.153 kb on + strand, within PFR28_00573at 615.153 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.228 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.405 kb on + strand, within PFR28_00573at 615.405 kb on + strand, within PFR28_00573at 615.405 kb on + strand, within PFR28_00573at 615.539 kb on + strand, within PFR28_00573at 615.539 kb on + strand, within PFR28_00573at 615.578 kb on + strand, within PFR28_00573at 615.677 kb on + strand, within PFR28_00573at 615.749 kb on + strand, within PFR28_00573at 615.749 kb on + strand, within PFR28_00573at 615.749 kb on + strand, within PFR28_00573at 615.749 kb on + strand, within PFR28_00573at 615.749 kb on + strand, within PFR28_00573at 615.938 kb on + strand, within PFR28_00573at 615.939 kb on - strand, within PFR28_00573at 616.073 kb on + strandat 616.473 kb on + strand, within PFR28_00574at 616.474 kb on - strand, within PFR28_00574at 616.729 kb on + strand, within PFR28_00574at 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.831 kb on + strandat 616.839 kb on + strandat 616.839 kb on + strandat 617.564 kb on - strandat 617.564 kb on - strandat 617.564 kb on - strandat 617.571 kb on + strandat 617.571 kb on + strandat 617.572 kb on - strandat 617.684 kb on + strandat 617.684 kb on + strandat 617.684 kb on + strandat 617.685 kb on - strandat 617.685 kb on - strandat 617.685 kb on - strandat 617.688 kb on + strandat 617.688 kb on + strandat 617.689 kb on - strandat 617.689 kb on - strandat 617.811 kb on - strand, within PFR28_00576

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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615,153 + PFR28_00573 0.32 +1.5
615,153 + PFR28_00573 0.32 +1.9
615,194 + PFR28_00573 0.35 +1.5
615,194 + PFR28_00573 0.35 -1.5
615,194 + PFR28_00573 0.35 +0.6
615,194 + PFR28_00573 0.35 -0.2
615,194 + PFR28_00573 0.35 +0.9
615,228 + PFR28_00573 0.37 +0.4
615,290 + PFR28_00573 0.41 -0.4
615,290 + PFR28_00573 0.41 +0.8
615,290 + PFR28_00573 0.41 +0.1
615,290 + PFR28_00573 0.41 -0.1
615,290 + PFR28_00573 0.41 +1.0
615,290 + PFR28_00573 0.41 -0.5
615,290 + PFR28_00573 0.41 +0.4
615,290 + PFR28_00573 0.41 -0.3
615,290 + PFR28_00573 0.41 +0.9
615,290 + PFR28_00573 0.41 -0.3
615,290 + PFR28_00573 0.41 +0.4
615,290 + PFR28_00573 0.41 -0.1
615,290 + PFR28_00573 0.41 +0.4
615,290 + PFR28_00573 0.41 +0.8
615,405 + PFR28_00573 0.49 +1.7
615,405 + PFR28_00573 0.49 -1.4
615,405 + PFR28_00573 0.49 +0.2
615,539 + PFR28_00573 0.58 +1.0
615,539 + PFR28_00573 0.58 -0.1
615,578 + PFR28_00573 0.61 +0.3
615,677 + PFR28_00573 0.68 +0.9
615,749 + PFR28_00573 0.72 +0.3
615,749 + PFR28_00573 0.72 +0.8
615,749 + PFR28_00573 0.72 -0.9
615,749 + PFR28_00573 0.72 +0.4
615,749 + PFR28_00573 0.72 +0.5
615,938 + PFR28_00573 0.85 -1.3
615,939 - PFR28_00573 0.85 -1.5
616,073 + +0.1
616,473 + PFR28_00574 0.47 -0.1
616,474 - PFR28_00574 0.47 -1.1
616,729 + PFR28_00574 0.82 -0.8
616,826 + +1.2
616,826 + +0.5
616,826 + -0.1
616,826 + -1.7
616,826 + +1.1
616,826 + +1.1
616,826 + -0.1
616,826 + -2.0
616,826 + +2.0
616,826 + -1.3
616,826 + -0.1
616,831 + -0.8
616,839 + -0.4
616,839 + +2.0
617,564 - -2.1
617,564 - -0.3
617,564 - -0.6
617,571 + -3.2
617,571 + +0.5
617,572 - -0.1
617,684 + -1.5
617,684 + +0.2
617,684 + +0.5
617,685 - +0.3
617,685 - -1.8
617,685 - -1.3
617,688 + +0.9
617,688 + -1.4
617,689 - +3.7
617,689 - +1.7
617,811 - PFR28_00576 0.11 -0.0

Or see this region's nucleotide sequence