Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18745

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18740 and ABIE41_RS18745 overlap by 4 nucleotidesABIE41_RS18745 and ABIE41_RS18750 overlap by 8 nucleotides ABIE41_RS18740: ABIE41_RS18740 - branched-chain amino acid ABC transporter permease, at 3,858,596 to 3,859,678 _RS18740 ABIE41_RS18745: ABIE41_RS18745 - ABC transporter ATP-binding protein, at 3,859,675 to 3,860,478 _RS18745 ABIE41_RS18750: ABIE41_RS18750 - ABC transporter permease, at 3,860,471 to 3,862,720 _RS18750 Position (kb) 3859 3860 3861Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3858.756 kb on - strand, within ABIE41_RS18740at 3858.756 kb on - strand, within ABIE41_RS18740at 3858.807 kb on - strand, within ABIE41_RS18740at 3858.954 kb on + strand, within ABIE41_RS18740at 3858.955 kb on - strand, within ABIE41_RS18740at 3859.001 kb on + strand, within ABIE41_RS18740at 3859.001 kb on + strand, within ABIE41_RS18740at 3859.001 kb on + strand, within ABIE41_RS18740at 3859.001 kb on + strand, within ABIE41_RS18740at 3859.001 kb on + strand, within ABIE41_RS18740at 3859.001 kb on + strand, within ABIE41_RS18740at 3859.002 kb on - strand, within ABIE41_RS18740at 3859.002 kb on - strand, within ABIE41_RS18740at 3859.002 kb on - strand, within ABIE41_RS18740at 3859.002 kb on - strand, within ABIE41_RS18740at 3859.002 kb on - strand, within ABIE41_RS18740at 3859.002 kb on - strand, within ABIE41_RS18740at 3859.002 kb on - strand, within ABIE41_RS18740at 3859.002 kb on - strand, within ABIE41_RS18740at 3859.002 kb on - strand, within ABIE41_RS18740at 3859.044 kb on - strand, within ABIE41_RS18740at 3859.061 kb on + strand, within ABIE41_RS18740at 3859.148 kb on + strand, within ABIE41_RS18740at 3859.148 kb on + strand, within ABIE41_RS18740at 3859.149 kb on - strand, within ABIE41_RS18740at 3859.149 kb on - strand, within ABIE41_RS18740at 3859.149 kb on - strand, within ABIE41_RS18740at 3859.149 kb on - strand, within ABIE41_RS18740at 3859.152 kb on - strand, within ABIE41_RS18740at 3859.196 kb on + strand, within ABIE41_RS18740at 3859.196 kb on + strand, within ABIE41_RS18740at 3859.196 kb on + strand, within ABIE41_RS18740at 3859.197 kb on - strand, within ABIE41_RS18740at 3859.197 kb on - strand, within ABIE41_RS18740at 3859.197 kb on - strand, within ABIE41_RS18740at 3859.197 kb on - strand, within ABIE41_RS18740at 3859.197 kb on - strand, within ABIE41_RS18740at 3859.469 kb on + strand, within ABIE41_RS18740at 3859.469 kb on + strand, within ABIE41_RS18740at 3859.469 kb on + strand, within ABIE41_RS18740at 3859.469 kb on + strand, within ABIE41_RS18740at 3859.470 kb on - strand, within ABIE41_RS18740at 3859.470 kb on - strand, within ABIE41_RS18740at 3859.470 kb on - strand, within ABIE41_RS18740at 3859.623 kb on - strandat 3859.623 kb on - strandat 3859.969 kb on + strand, within ABIE41_RS18745at 3859.969 kb on + strand, within ABIE41_RS18745at 3859.969 kb on + strand, within ABIE41_RS18745at 3859.969 kb on + strand, within ABIE41_RS18745at 3859.970 kb on - strand, within ABIE41_RS18745at 3859.970 kb on - strand, within ABIE41_RS18745at 3860.017 kb on + strand, within ABIE41_RS18745at 3860.017 kb on + strand, within ABIE41_RS18745at 3860.125 kb on - strand, within ABIE41_RS18745at 3860.162 kb on - strand, within ABIE41_RS18745at 3860.162 kb on - strand, within ABIE41_RS18745at 3860.308 kb on + strand, within ABIE41_RS18745at 3860.308 kb on + strand, within ABIE41_RS18745at 3860.308 kb on + strand, within ABIE41_RS18745at 3860.309 kb on - strand, within ABIE41_RS18745at 3860.309 kb on - strand, within ABIE41_RS18745at 3860.309 kb on - strand, within ABIE41_RS18745at 3860.309 kb on - strand, within ABIE41_RS18745at 3860.373 kb on + strand, within ABIE41_RS18745at 3860.374 kb on - strand, within ABIE41_RS18745at 3860.374 kb on - strand, within ABIE41_RS18745at 3860.374 kb on - strand, within ABIE41_RS18745at 3860.440 kb on + strandat 3860.441 kb on - strandat 3860.441 kb on - strandat 3860.441 kb on - strandat 3860.441 kb on - strandat 3860.543 kb on + strandat 3860.543 kb on + strandat 3860.543 kb on + strandat 3860.543 kb on + strandat 3860.544 kb on - strandat 3860.544 kb on - strandat 3860.544 kb on - strandat 3860.747 kb on + strand, within ABIE41_RS18750at 3860.748 kb on - strand, within ABIE41_RS18750at 3860.748 kb on - strand, within ABIE41_RS18750at 3860.850 kb on - strand, within ABIE41_RS18750at 3861.080 kb on - strand, within ABIE41_RS18750at 3861.308 kb on + strand, within ABIE41_RS18750at 3861.309 kb on - strand, within ABIE41_RS18750at 3861.309 kb on - strand, within ABIE41_RS18750

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
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3,858,756 - ABIE41_RS18740 0.15 -3.0
3,858,756 - ABIE41_RS18740 0.15 +0.7
3,858,807 - ABIE41_RS18740 0.19 +0.1
3,858,954 + ABIE41_RS18740 0.33 -0.9
3,858,955 - ABIE41_RS18740 0.33 +0.4
3,859,001 + ABIE41_RS18740 0.37 +0.1
3,859,001 + ABIE41_RS18740 0.37 +0.3
3,859,001 + ABIE41_RS18740 0.37 -0.1
3,859,001 + ABIE41_RS18740 0.37 +1.2
3,859,001 + ABIE41_RS18740 0.37 -0.1
3,859,001 + ABIE41_RS18740 0.37 +1.0
3,859,002 - ABIE41_RS18740 0.37 +1.4
3,859,002 - ABIE41_RS18740 0.37 +0.4
3,859,002 - ABIE41_RS18740 0.37 +0.4
3,859,002 - ABIE41_RS18740 0.37 +0.1
3,859,002 - ABIE41_RS18740 0.37 +0.4
3,859,002 - ABIE41_RS18740 0.37 -0.2
3,859,002 - ABIE41_RS18740 0.37 +1.4
3,859,002 - ABIE41_RS18740 0.37 +0.3
3,859,002 - ABIE41_RS18740 0.37 +0.8
3,859,044 - ABIE41_RS18740 0.41 +0.1
3,859,061 + ABIE41_RS18740 0.43 +0.1
3,859,148 + ABIE41_RS18740 0.51 +0.3
3,859,148 + ABIE41_RS18740 0.51 -1.2
3,859,149 - ABIE41_RS18740 0.51 -0.4
3,859,149 - ABIE41_RS18740 0.51 +0.1
3,859,149 - ABIE41_RS18740 0.51 +0.0
3,859,149 - ABIE41_RS18740 0.51 +0.2
3,859,152 - ABIE41_RS18740 0.51 -0.2
3,859,196 + ABIE41_RS18740 0.55 +0.7
3,859,196 + ABIE41_RS18740 0.55 +0.1
3,859,196 + ABIE41_RS18740 0.55 -0.8
3,859,197 - ABIE41_RS18740 0.55 +0.3
3,859,197 - ABIE41_RS18740 0.55 +0.1
3,859,197 - ABIE41_RS18740 0.55 -0.0
3,859,197 - ABIE41_RS18740 0.55 +0.7
3,859,197 - ABIE41_RS18740 0.55 -2.9
3,859,469 + ABIE41_RS18740 0.81 -0.6
3,859,469 + ABIE41_RS18740 0.81 +0.2
3,859,469 + ABIE41_RS18740 0.81 +0.6
3,859,469 + ABIE41_RS18740 0.81 +0.1
3,859,470 - ABIE41_RS18740 0.81 -0.5
3,859,470 - ABIE41_RS18740 0.81 +1.3
3,859,470 - ABIE41_RS18740 0.81 +2.3
3,859,623 - -0.1
3,859,623 - -0.3
3,859,969 + ABIE41_RS18745 0.37 -1.2
3,859,969 + ABIE41_RS18745 0.37 -0.9
3,859,969 + ABIE41_RS18745 0.37 -0.8
3,859,969 + ABIE41_RS18745 0.37 -0.3
3,859,970 - ABIE41_RS18745 0.37 -0.6
3,859,970 - ABIE41_RS18745 0.37 -0.4
3,860,017 + ABIE41_RS18745 0.43 +0.3
3,860,017 + ABIE41_RS18745 0.43 -0.3
3,860,125 - ABIE41_RS18745 0.56 -0.2
3,860,162 - ABIE41_RS18745 0.61 +0.4
3,860,162 - ABIE41_RS18745 0.61 +2.6
3,860,308 + ABIE41_RS18745 0.79 -1.0
3,860,308 + ABIE41_RS18745 0.79 -0.1
3,860,308 + ABIE41_RS18745 0.79 +0.2
3,860,309 - ABIE41_RS18745 0.79 -0.0
3,860,309 - ABIE41_RS18745 0.79 -0.3
3,860,309 - ABIE41_RS18745 0.79 +0.3
3,860,309 - ABIE41_RS18745 0.79 +0.4
3,860,373 + ABIE41_RS18745 0.87 -0.6
3,860,374 - ABIE41_RS18745 0.87 +0.4
3,860,374 - ABIE41_RS18745 0.87 +0.4
3,860,374 - ABIE41_RS18745 0.87 -0.8
3,860,440 + +1.8
3,860,441 - +0.4
3,860,441 - +1.3
3,860,441 - +1.7
3,860,441 - -0.3
3,860,543 + -0.2
3,860,543 + -1.5
3,860,543 + +0.2
3,860,543 + +0.4
3,860,544 - +0.1
3,860,544 - -1.9
3,860,544 - +0.6
3,860,747 + ABIE41_RS18750 0.12 -0.3
3,860,748 - ABIE41_RS18750 0.12 +0.1
3,860,748 - ABIE41_RS18750 0.12 +0.9
3,860,850 - ABIE41_RS18750 0.17 +2.3
3,861,080 - ABIE41_RS18750 0.27 -0.2
3,861,308 + ABIE41_RS18750 0.37 -0.2
3,861,309 - ABIE41_RS18750 0.37 +0.4
3,861,309 - ABIE41_RS18750 0.37 +1.1

Or see this region's nucleotide sequence