Strain Fitness in Bosea sp. OAE506 around ABIE41_RS13905

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS13895 and ABIE41_RS13900 are separated by 9 nucleotidesABIE41_RS13900 and ABIE41_RS13905 are separated by 131 nucleotidesABIE41_RS13905 and ABIE41_RS13910 are separated by 132 nucleotidesABIE41_RS13910 and ABIE41_RS13915 overlap by 4 nucleotides ABIE41_RS13895: ABIE41_RS13895 - PLP-dependent aminotransferase family protein, at 2,851,592 to 2,852,812 _RS13895 ABIE41_RS13900: ABIE41_RS13900 - DUF938 domain-containing protein, at 2,852,822 to 2,853,487 _RS13900 ABIE41_RS13905: ABIE41_RS13905 - hemolysin family protein, at 2,853,619 to 2,854,881 _RS13905 ABIE41_RS13910: ABIE41_RS13910 - sulfurtransferase/chromate resistance protein, at 2,855,014 to 2,855,847 _RS13910 ABIE41_RS13915: ABIE41_RS13915 - chromate efflux transporter, at 2,855,844 to 2,857,244 _RS13915 Position (kb) 2853 2854 2855Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2852.683 kb on - strand, within ABIE41_RS13895at 2853.021 kb on + strand, within ABIE41_RS13900at 2853.022 kb on - strand, within ABIE41_RS13900at 2853.022 kb on - strand, within ABIE41_RS13900at 2853.371 kb on - strand, within ABIE41_RS13900at 2853.548 kb on + strandat 2853.548 kb on + strandat 2853.548 kb on + strandat 2853.549 kb on - strandat 2853.592 kb on + strandat 2853.593 kb on - strandat 2853.937 kb on + strand, within ABIE41_RS13905at 2853.937 kb on + strand, within ABIE41_RS13905at 2853.937 kb on + strand, within ABIE41_RS13905at 2853.938 kb on - strand, within ABIE41_RS13905at 2853.938 kb on - strand, within ABIE41_RS13905at 2853.938 kb on - strand, within ABIE41_RS13905at 2853.938 kb on - strand, within ABIE41_RS13905at 2854.524 kb on + strand, within ABIE41_RS13905at 2854.524 kb on + strand, within ABIE41_RS13905at 2854.524 kb on + strand, within ABIE41_RS13905at 2854.524 kb on + strand, within ABIE41_RS13905at 2854.524 kb on + strand, within ABIE41_RS13905at 2854.525 kb on - strand, within ABIE41_RS13905at 2854.547 kb on - strand, within ABIE41_RS13905at 2854.925 kb on + strandat 2854.925 kb on + strandat 2854.926 kb on - strandat 2854.926 kb on - strandat 2854.926 kb on - strandat 2854.988 kb on - strandat 2855.030 kb on - strandat 2855.162 kb on - strand, within ABIE41_RS13910at 2855.185 kb on + strand, within ABIE41_RS13910at 2855.186 kb on - strand, within ABIE41_RS13910at 2855.755 kb on + strand, within ABIE41_RS13910at 2855.755 kb on + strand, within ABIE41_RS13910at 2855.755 kb on + strand, within ABIE41_RS13910at 2855.756 kb on - strand, within ABIE41_RS13910at 2855.756 kb on - strand, within ABIE41_RS13910at 2855.767 kb on + strandat 2855.802 kb on + strandat 2855.802 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
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2,852,683 - ABIE41_RS13895 0.89 -0.4
2,853,021 + ABIE41_RS13900 0.30 -1.7
2,853,022 - ABIE41_RS13900 0.30 +0.3
2,853,022 - ABIE41_RS13900 0.30 -0.0
2,853,371 - ABIE41_RS13900 0.82 -0.3
2,853,548 + -0.9
2,853,548 + -1.0
2,853,548 + -0.2
2,853,549 - -1.6
2,853,592 + -0.9
2,853,593 - -1.9
2,853,937 + ABIE41_RS13905 0.25 -1.5
2,853,937 + ABIE41_RS13905 0.25 -2.3
2,853,937 + ABIE41_RS13905 0.25 -1.3
2,853,938 - ABIE41_RS13905 0.25 -0.8
2,853,938 - ABIE41_RS13905 0.25 -0.5
2,853,938 - ABIE41_RS13905 0.25 -2.2
2,853,938 - ABIE41_RS13905 0.25 -1.0
2,854,524 + ABIE41_RS13905 0.72 -1.6
2,854,524 + ABIE41_RS13905 0.72 -1.9
2,854,524 + ABIE41_RS13905 0.72 -1.6
2,854,524 + ABIE41_RS13905 0.72 -2.8
2,854,524 + ABIE41_RS13905 0.72 -2.4
2,854,525 - ABIE41_RS13905 0.72 -0.8
2,854,547 - ABIE41_RS13905 0.73 +1.4
2,854,925 + -0.3
2,854,925 + -0.1
2,854,926 - +0.5
2,854,926 - -0.1
2,854,926 - -0.7
2,854,988 - -1.8
2,855,030 - -0.0
2,855,162 - ABIE41_RS13910 0.18 +0.1
2,855,185 + ABIE41_RS13910 0.21 +0.3
2,855,186 - ABIE41_RS13910 0.21 +0.1
2,855,755 + ABIE41_RS13910 0.89 -0.3
2,855,755 + ABIE41_RS13910 0.89 +0.1
2,855,755 + ABIE41_RS13910 0.89 +0.4
2,855,756 - ABIE41_RS13910 0.89 -0.6
2,855,756 - ABIE41_RS13910 0.89 -0.8
2,855,767 + +0.7
2,855,802 + -0.6
2,855,802 + +2.9

Or see this region's nucleotide sequence