Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS13895 and ABIE41_RS13900 are separated by 9 nucleotides ABIE41_RS13900 and ABIE41_RS13905 are separated by 131 nucleotides ABIE41_RS13905 and ABIE41_RS13910 are separated by 132 nucleotides ABIE41_RS13910 and ABIE41_RS13915 overlap by 4 nucleotides
ABIE41_RS13895: ABIE41_RS13895 - PLP-dependent aminotransferase family protein, at 2,851,592 to 2,852,812
_RS13895
ABIE41_RS13900: ABIE41_RS13900 - DUF938 domain-containing protein, at 2,852,822 to 2,853,487
_RS13900
ABIE41_RS13905: ABIE41_RS13905 - hemolysin family protein, at 2,853,619 to 2,854,881
_RS13905
ABIE41_RS13910: ABIE41_RS13910 - sulfurtransferase/chromate resistance protein, at 2,855,014 to 2,855,847
_RS13910
ABIE41_RS13915: ABIE41_RS13915 - chromate efflux transporter, at 2,855,844 to 2,857,244
_RS13915
Position (kb)
2853
2854
2855 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2852.683 kb on - strand, within ABIE41_RS13895 at 2853.021 kb on + strand, within ABIE41_RS13900 at 2853.022 kb on - strand, within ABIE41_RS13900 at 2853.022 kb on - strand, within ABIE41_RS13900 at 2853.371 kb on - strand, within ABIE41_RS13900 at 2853.548 kb on + strand at 2853.548 kb on + strand at 2853.548 kb on + strand at 2853.549 kb on - strand at 2853.592 kb on + strand at 2853.593 kb on - strand at 2853.937 kb on + strand, within ABIE41_RS13905 at 2853.937 kb on + strand, within ABIE41_RS13905 at 2853.937 kb on + strand, within ABIE41_RS13905 at 2853.938 kb on - strand, within ABIE41_RS13905 at 2853.938 kb on - strand, within ABIE41_RS13905 at 2853.938 kb on - strand, within ABIE41_RS13905 at 2853.938 kb on - strand, within ABIE41_RS13905 at 2854.524 kb on + strand, within ABIE41_RS13905 at 2854.524 kb on + strand, within ABIE41_RS13905 at 2854.524 kb on + strand, within ABIE41_RS13905 at 2854.524 kb on + strand, within ABIE41_RS13905 at 2854.524 kb on + strand, within ABIE41_RS13905 at 2854.525 kb on - strand, within ABIE41_RS13905 at 2854.547 kb on - strand, within ABIE41_RS13905 at 2854.925 kb on + strand at 2854.925 kb on + strand at 2854.926 kb on - strand at 2854.926 kb on - strand at 2854.926 kb on - strand at 2854.988 kb on - strand at 2855.030 kb on - strand at 2855.162 kb on - strand, within ABIE41_RS13910 at 2855.185 kb on + strand, within ABIE41_RS13910 at 2855.186 kb on - strand, within ABIE41_RS13910 at 2855.755 kb on + strand, within ABIE41_RS13910 at 2855.755 kb on + strand, within ABIE41_RS13910 at 2855.755 kb on + strand, within ABIE41_RS13910 at 2855.756 kb on - strand, within ABIE41_RS13910 at 2855.756 kb on - strand, within ABIE41_RS13910 at 2855.767 kb on + strand at 2855.802 kb on + strand at 2855.802 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM remove 2,852,683 - ABIE41_RS13895 0.89 -0.4 2,853,021 + ABIE41_RS13900 0.30 -1.7 2,853,022 - ABIE41_RS13900 0.30 +0.3 2,853,022 - ABIE41_RS13900 0.30 -0.0 2,853,371 - ABIE41_RS13900 0.82 -0.3 2,853,548 + -0.9 2,853,548 + -1.0 2,853,548 + -0.2 2,853,549 - -1.6 2,853,592 + -0.9 2,853,593 - -1.9 2,853,937 + ABIE41_RS13905 0.25 -1.5 2,853,937 + ABIE41_RS13905 0.25 -2.3 2,853,937 + ABIE41_RS13905 0.25 -1.3 2,853,938 - ABIE41_RS13905 0.25 -0.8 2,853,938 - ABIE41_RS13905 0.25 -0.5 2,853,938 - ABIE41_RS13905 0.25 -2.2 2,853,938 - ABIE41_RS13905 0.25 -1.0 2,854,524 + ABIE41_RS13905 0.72 -1.6 2,854,524 + ABIE41_RS13905 0.72 -1.9 2,854,524 + ABIE41_RS13905 0.72 -1.6 2,854,524 + ABIE41_RS13905 0.72 -2.8 2,854,524 + ABIE41_RS13905 0.72 -2.4 2,854,525 - ABIE41_RS13905 0.72 -0.8 2,854,547 - ABIE41_RS13905 0.73 +1.4 2,854,925 + -0.3 2,854,925 + -0.1 2,854,926 - +0.5 2,854,926 - -0.1 2,854,926 - -0.7 2,854,988 - -1.8 2,855,030 - -0.0 2,855,162 - ABIE41_RS13910 0.18 +0.1 2,855,185 + ABIE41_RS13910 0.21 +0.3 2,855,186 - ABIE41_RS13910 0.21 +0.1 2,855,755 + ABIE41_RS13910 0.89 -0.3 2,855,755 + ABIE41_RS13910 0.89 +0.1 2,855,755 + ABIE41_RS13910 0.89 +0.4 2,855,756 - ABIE41_RS13910 0.89 -0.6 2,855,756 - ABIE41_RS13910 0.89 -0.8 2,855,767 + +0.7 2,855,802 + -0.6 2,855,802 + +2.9
Or see this region's nucleotide sequence