Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02710 and ABIE41_RS02715 are separated by 236 nucleotides ABIE41_RS02715 and ABIE41_RS02720 overlap by 8 nucleotides
ABIE41_RS02710: ABIE41_RS02710 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 550,427 to 551,971
_RS02710
ABIE41_RS02715: ABIE41_RS02715 - nucleotidyltransferase family protein, at 552,208 to 552,927
_RS02715
ABIE41_RS02720: ABIE41_RS02720 - double-strand break repair protein AddB, at 552,920 to 556,027
_RS02720
Position (kb) 552
553 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 551.276 kb on + strand, within ABIE41_RS02710 at 551.277 kb on - strand, within ABIE41_RS02710 at 551.372 kb on + strand, within ABIE41_RS02710 at 551.372 kb on + strand, within ABIE41_RS02710 at 551.421 kb on - strand, within ABIE41_RS02710 at 551.636 kb on + strand, within ABIE41_RS02710 at 551.772 kb on - strand, within ABIE41_RS02710 at 551.852 kb on + strand at 551.853 kb on - strand at 551.882 kb on + strand at 551.883 kb on - strand at 551.934 kb on - strand at 551.934 kb on - strand at 551.993 kb on + strand at 551.993 kb on + strand at 551.993 kb on + strand at 551.993 kb on + strand at 551.993 kb on + strand at 551.993 kb on + strand at 551.994 kb on - strand at 552.403 kb on - strand, within ABIE41_RS02715 at 552.403 kb on - strand, within ABIE41_RS02715 at 552.710 kb on - strand, within ABIE41_RS02715 at 552.751 kb on - strand, within ABIE41_RS02715 at 552.853 kb on - strand, within ABIE41_RS02715 at 553.055 kb on + strand at 553.055 kb on + strand at 553.055 kb on + strand at 553.055 kb on + strand at 553.056 kb on - strand at 553.349 kb on + strand, within ABIE41_RS02720 at 553.349 kb on + strand, within ABIE41_RS02720 at 553.350 kb on - strand, within ABIE41_RS02720 at 553.350 kb on - strand, within ABIE41_RS02720 at 553.350 kb on - strand, within ABIE41_RS02720 at 553.350 kb on - strand, within ABIE41_RS02720
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM remove 551,276 + ABIE41_RS02710 0.55 -0.4 551,277 - ABIE41_RS02710 0.55 +1.3 551,372 + ABIE41_RS02710 0.61 -0.8 551,372 + ABIE41_RS02710 0.61 +0.1 551,421 - ABIE41_RS02710 0.64 +1.9 551,636 + ABIE41_RS02710 0.78 -1.5 551,772 - ABIE41_RS02710 0.87 -0.9 551,852 + +1.9 551,853 - -3.0 551,882 + -1.6 551,883 - +0.2 551,934 - -2.9 551,934 - -0.3 551,993 + -3.6 551,993 + -0.3 551,993 + +0.2 551,993 + +0.2 551,993 + -0.4 551,993 + +1.3 551,994 - +1.9 552,403 - ABIE41_RS02715 0.27 -1.1 552,403 - ABIE41_RS02715 0.27 +0.3 552,710 - ABIE41_RS02715 0.70 -0.6 552,751 - ABIE41_RS02715 0.75 -1.2 552,853 - ABIE41_RS02715 0.90 -0.5 553,055 + -1.3 553,055 + +1.1 553,055 + -0.3 553,055 + -0.2 553,056 - +0.9 553,349 + ABIE41_RS02720 0.14 +0.0 553,349 + ABIE41_RS02720 0.14 +1.5 553,350 - ABIE41_RS02720 0.14 -0.0 553,350 - ABIE41_RS02720 0.14 -1.8 553,350 - ABIE41_RS02720 0.14 +0.1 553,350 - ABIE41_RS02720 0.14 -0.3
Or see this region's nucleotide sequence