Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS00115 and ABIE41_RS00120 are separated by 83 nucleotides ABIE41_RS00120 and ABIE41_RS00125 are separated by 118 nucleotides ABIE41_RS00125 and ABIE41_RS00130 are separated by 220 nucleotides
ABIE41_RS00115: ABIE41_RS00115 - PTS IIA-like nitrogen regulatory protein PtsN, at 17,649 to 18,110
_RS00115
ABIE41_RS00120: ABIE41_RS00120 - ribosome-associated translation inhibitor RaiA, at 18,194 to 18,781
_RS00120
ABIE41_RS00125: ABIE41_RS00125 - RNA polymerase factor sigma-54, at 18,900 to 20,426
_RS00125
ABIE41_RS00130: ABIE41_RS00130 - LPS export ABC transporter ATP-binding protein, at 20,647 to 21,435
_RS00130
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 18.195 kb on + strand at 18.195 kb on + strand at 18.196 kb on - strand at 18.196 kb on - strand at 18.196 kb on - strand at 18.196 kb on - strand at 18.196 kb on - strand at 18.249 kb on + strand at 18.250 kb on - strand at 18.251 kb on + strand at 18.251 kb on + strand at 18.251 kb on + strand at 18.251 kb on + strand at 18.251 kb on + strand at 18.251 kb on + strand at 18.252 kb on - strand at 18.252 kb on - strand at 18.252 kb on - strand at 18.252 kb on - strand at 18.252 kb on - strand at 18.252 kb on - strand at 18.444 kb on + strand, within ABIE41_RS00120 at 18.444 kb on + strand, within ABIE41_RS00120 at 18.444 kb on + strand, within ABIE41_RS00120 at 18.444 kb on + strand, within ABIE41_RS00120 at 18.444 kb on + strand, within ABIE41_RS00120 at 18.444 kb on + strand, within ABIE41_RS00120 at 18.445 kb on - strand, within ABIE41_RS00120 at 18.445 kb on - strand, within ABIE41_RS00120 at 18.445 kb on - strand, within ABIE41_RS00120 at 18.445 kb on - strand, within ABIE41_RS00120 at 18.445 kb on - strand, within ABIE41_RS00120 at 18.445 kb on - strand, within ABIE41_RS00120 at 18.564 kb on + strand, within ABIE41_RS00120 at 18.564 kb on + strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.687 kb on + strand, within ABIE41_RS00120 at 18.687 kb on + strand, within ABIE41_RS00120 at 18.688 kb on - strand, within ABIE41_RS00120 at 18.688 kb on - strand, within ABIE41_RS00120 at 18.688 kb on - strand, within ABIE41_RS00120 at 18.690 kb on + strand, within ABIE41_RS00120 at 18.690 kb on + strand, within ABIE41_RS00120 at 18.691 kb on - strand, within ABIE41_RS00120 at 18.691 kb on - strand, within ABIE41_RS00120 at 18.691 kb on - strand, within ABIE41_RS00120 at 18.691 kb on - strand, within ABIE41_RS00120 at 18.834 kb on + strand at 18.834 kb on + strand at 18.834 kb on + strand at 18.835 kb on - strand at 18.835 kb on - strand at 18.835 kb on - strand at 18.835 kb on - strand at 18.863 kb on + strand at 18.864 kb on - strand at 18.955 kb on - strand at 19.098 kb on + strand, within ABIE41_RS00125 at 19.159 kb on + strand, within ABIE41_RS00125 at 19.159 kb on + strand, within ABIE41_RS00125 at 19.159 kb on + strand, within ABIE41_RS00125 at 19.159 kb on + strand, within ABIE41_RS00125 at 19.159 kb on + strand, within ABIE41_RS00125 at 19.160 kb on - strand, within ABIE41_RS00125 at 19.160 kb on - strand, within ABIE41_RS00125 at 19.160 kb on - strand, within ABIE41_RS00125 at 19.195 kb on + strand, within ABIE41_RS00125 at 19.195 kb on + strand, within ABIE41_RS00125 at 19.195 kb on + strand, within ABIE41_RS00125 at 19.195 kb on + strand, within ABIE41_RS00125 at 19.195 kb on + strand, within ABIE41_RS00125 at 19.195 kb on + strand, within ABIE41_RS00125 at 19.196 kb on - strand, within ABIE41_RS00125 at 19.196 kb on - strand, within ABIE41_RS00125 at 19.196 kb on - strand, within ABIE41_RS00125 at 19.196 kb on - strand, within ABIE41_RS00125 at 19.196 kb on - strand, within ABIE41_RS00125 at 19.438 kb on + strand, within ABIE41_RS00125 at 19.456 kb on + strand, within ABIE41_RS00125 at 19.456 kb on + strand, within ABIE41_RS00125 at 19.456 kb on + strand, within ABIE41_RS00125 at 19.456 kb on + strand, within ABIE41_RS00125 at 19.456 kb on + strand, within ABIE41_RS00125 at 19.456 kb on + strand, within ABIE41_RS00125 at 19.457 kb on - strand, within ABIE41_RS00125 at 19.457 kb on - strand, within ABIE41_RS00125 at 19.457 kb on - strand, within ABIE41_RS00125 at 19.457 kb on - strand, within ABIE41_RS00125 at 19.457 kb on - strand, within ABIE41_RS00125 at 19.457 kb on - strand, within ABIE41_RS00125 at 19.457 kb on - strand, within ABIE41_RS00125 at 19.814 kb on + strand, within ABIE41_RS00125 at 19.815 kb on - strand, within ABIE41_RS00125 at 20.060 kb on - strand, within ABIE41_RS00125 at 20.060 kb on - strand, within ABIE41_RS00125 at 20.060 kb on - strand, within ABIE41_RS00125 at 20.206 kb on + strand, within ABIE41_RS00125 at 20.207 kb on - strand, within ABIE41_RS00125 at 20.207 kb on - strand, within ABIE41_RS00125 at 20.207 kb on - strand, within ABIE41_RS00125 at 20.545 kb on + strand at 20.545 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM remove 18,195 + +1.3 18,195 + +2.8 18,196 - +1.0 18,196 - -1.7 18,196 - +0.2 18,196 - -0.0 18,196 - +0.2 18,249 + +0.3 18,250 - +0.8 18,251 + -0.3 18,251 + -1.2 18,251 + -1.0 18,251 + -0.3 18,251 + -0.4 18,251 + -0.4 18,252 - +1.1 18,252 - -0.9 18,252 - +2.1 18,252 - -1.2 18,252 - -0.3 18,252 - -0.4 18,444 + ABIE41_RS00120 0.43 -0.6 18,444 + ABIE41_RS00120 0.43 +0.2 18,444 + ABIE41_RS00120 0.43 +1.0 18,444 + ABIE41_RS00120 0.43 -0.4 18,444 + ABIE41_RS00120 0.43 -0.6 18,444 + ABIE41_RS00120 0.43 -0.6 18,445 - ABIE41_RS00120 0.43 +2.8 18,445 - ABIE41_RS00120 0.43 +0.7 18,445 - ABIE41_RS00120 0.43 +1.8 18,445 - ABIE41_RS00120 0.43 -0.7 18,445 - ABIE41_RS00120 0.43 -0.6 18,445 - ABIE41_RS00120 0.43 +1.4 18,564 + ABIE41_RS00120 0.63 -1.2 18,564 + ABIE41_RS00120 0.63 +2.8 18,565 - ABIE41_RS00120 0.63 -1.0 18,565 - ABIE41_RS00120 0.63 -1.0 18,565 - ABIE41_RS00120 0.63 -0.5 18,565 - ABIE41_RS00120 0.63 +0.2 18,565 - ABIE41_RS00120 0.63 -1.0 18,565 - ABIE41_RS00120 0.63 -1.4 18,565 - ABIE41_RS00120 0.63 -0.2 18,565 - ABIE41_RS00120 0.63 -1.3 18,565 - ABIE41_RS00120 0.63 +1.3 18,687 + ABIE41_RS00120 0.84 -2.7 18,687 + ABIE41_RS00120 0.84 +0.3 18,688 - ABIE41_RS00120 0.84 +0.2 18,688 - ABIE41_RS00120 0.84 +1.6 18,688 - ABIE41_RS00120 0.84 -0.8 18,690 + ABIE41_RS00120 0.84 +0.0 18,690 + ABIE41_RS00120 0.84 -0.7 18,691 - ABIE41_RS00120 0.85 -1.1 18,691 - ABIE41_RS00120 0.85 -0.1 18,691 - ABIE41_RS00120 0.85 -0.8 18,691 - ABIE41_RS00120 0.85 -2.5 18,834 + +2.6 18,834 + -0.8 18,834 + -0.5 18,835 - -0.1 18,835 - -0.7 18,835 - +0.0 18,835 - -0.4 18,863 + -0.6 18,864 - +0.5 18,955 - +0.5 19,098 + ABIE41_RS00125 0.13 +0.3 19,159 + ABIE41_RS00125 0.17 -0.3 19,159 + ABIE41_RS00125 0.17 -1.6 19,159 + ABIE41_RS00125 0.17 -0.2 19,159 + ABIE41_RS00125 0.17 -0.3 19,159 + ABIE41_RS00125 0.17 -1.0 19,160 - ABIE41_RS00125 0.17 +1.0 19,160 - ABIE41_RS00125 0.17 +1.3 19,160 - ABIE41_RS00125 0.17 -2.3 19,195 + ABIE41_RS00125 0.19 -0.8 19,195 + ABIE41_RS00125 0.19 -0.4 19,195 + ABIE41_RS00125 0.19 -0.1 19,195 + ABIE41_RS00125 0.19 -0.3 19,195 + ABIE41_RS00125 0.19 -1.2 19,195 + ABIE41_RS00125 0.19 -0.5 19,196 - ABIE41_RS00125 0.19 +0.0 19,196 - ABIE41_RS00125 0.19 -0.7 19,196 - ABIE41_RS00125 0.19 -2.2 19,196 - ABIE41_RS00125 0.19 -0.1 19,196 - ABIE41_RS00125 0.19 -0.5 19,438 + ABIE41_RS00125 0.35 -0.2 19,456 + ABIE41_RS00125 0.36 -0.8 19,456 + ABIE41_RS00125 0.36 +0.3 19,456 + ABIE41_RS00125 0.36 -0.2 19,456 + ABIE41_RS00125 0.36 +2.8 19,456 + ABIE41_RS00125 0.36 -0.5 19,456 + ABIE41_RS00125 0.36 +1.1 19,457 - ABIE41_RS00125 0.36 -0.2 19,457 - ABIE41_RS00125 0.36 -0.1 19,457 - ABIE41_RS00125 0.36 -0.7 19,457 - ABIE41_RS00125 0.36 -0.5 19,457 - ABIE41_RS00125 0.36 -1.2 19,457 - ABIE41_RS00125 0.36 -0.9 19,457 - ABIE41_RS00125 0.36 +0.2 19,814 + ABIE41_RS00125 0.60 +0.2 19,815 - ABIE41_RS00125 0.60 -0.6 20,060 - ABIE41_RS00125 0.76 +1.1 20,060 - ABIE41_RS00125 0.76 +1.0 20,060 - ABIE41_RS00125 0.76 -0.2 20,206 + ABIE41_RS00125 0.86 -0.4 20,207 - ABIE41_RS00125 0.86 +0.5 20,207 - ABIE41_RS00125 0.86 -0.1 20,207 - ABIE41_RS00125 0.86 -0.2 20,545 + +0.7 20,545 + -0.3
Or see this region's nucleotide sequence