Experiment: Bas49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04176 and ECD_04177 are separated by 64 nucleotides ECD_04177 and ECD_04178 are separated by 19 nucleotides
ECD_04176: ECD_04176 - 9-O-acetyl N-acetylneuraminic acid esterase, at 4,445,117 to 4,446,097
_04176
ECD_04177: ECD_04177 - N-acetylneuraminic acid mutarotase, at 4,446,162 to 4,447,268
_04177
ECD_04178: ECD_04178 - N-acetylnuraminic acid outer membrane channel protein, at 4,447,288 to 4,448,004
_04178
Position (kb)
4446
4447
4448 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4445.250 kb on + strand, within ECD_04176 at 4445.264 kb on + strand, within ECD_04176 at 4445.265 kb on - strand, within ECD_04176 at 4445.382 kb on + strand, within ECD_04176 at 4445.452 kb on + strand, within ECD_04176 at 4445.453 kb on - strand, within ECD_04176 at 4445.456 kb on - strand, within ECD_04176 at 4445.478 kb on - strand, within ECD_04176 at 4445.503 kb on + strand, within ECD_04176 at 4445.630 kb on + strand, within ECD_04176 at 4445.700 kb on + strand, within ECD_04176 at 4445.700 kb on + strand, within ECD_04176 at 4445.701 kb on - strand, within ECD_04176 at 4445.804 kb on - strand, within ECD_04176 at 4445.830 kb on - strand, within ECD_04176 at 4445.911 kb on + strand, within ECD_04176 at 4445.911 kb on + strand, within ECD_04176 at 4445.911 kb on + strand, within ECD_04176 at 4445.912 kb on - strand, within ECD_04176 at 4445.966 kb on + strand, within ECD_04176 at 4445.974 kb on + strand, within ECD_04176 at 4446.041 kb on - strand at 4446.070 kb on - strand at 4446.087 kb on - strand at 4446.260 kb on + strand at 4446.261 kb on - strand at 4446.280 kb on - strand, within ECD_04177 at 4446.386 kb on - strand, within ECD_04177 at 4446.516 kb on - strand, within ECD_04177 at 4446.762 kb on - strand, within ECD_04177 at 4446.847 kb on + strand, within ECD_04177 at 4446.848 kb on - strand, within ECD_04177 at 4446.940 kb on + strand, within ECD_04177 at 4446.941 kb on - strand, within ECD_04177 at 4446.949 kb on - strand, within ECD_04177 at 4447.022 kb on + strand, within ECD_04177 at 4447.377 kb on - strand, within ECD_04178 at 4447.393 kb on - strand, within ECD_04178 at 4447.485 kb on - strand, within ECD_04178 at 4447.486 kb on + strand, within ECD_04178 at 4447.521 kb on + strand, within ECD_04178 at 4447.530 kb on - strand, within ECD_04178
Per-strain Table
Position Strand Gene LocusTag Fraction Bas49 remove 4,445,250 + ECD_04176 0.14 +1.0 4,445,264 + ECD_04176 0.15 -2.1 4,445,265 - ECD_04176 0.15 +0.3 4,445,382 + ECD_04176 0.27 +1.1 4,445,452 + ECD_04176 0.34 -0.0 4,445,453 - ECD_04176 0.34 -0.2 4,445,456 - ECD_04176 0.35 +0.7 4,445,478 - ECD_04176 0.37 -0.2 4,445,503 + ECD_04176 0.39 +0.7 4,445,630 + ECD_04176 0.52 +1.6 4,445,700 + ECD_04176 0.59 +1.8 4,445,700 + ECD_04176 0.59 +1.1 4,445,701 - ECD_04176 0.60 +1.0 4,445,804 - ECD_04176 0.70 +0.7 4,445,830 - ECD_04176 0.73 -1.6 4,445,911 + ECD_04176 0.81 +0.4 4,445,911 + ECD_04176 0.81 -0.8 4,445,911 + ECD_04176 0.81 -1.8 4,445,912 - ECD_04176 0.81 +1.5 4,445,966 + ECD_04176 0.87 -0.8 4,445,974 + ECD_04176 0.87 -0.8 4,446,041 - +0.5 4,446,070 - +0.3 4,446,087 - -0.6 4,446,260 + +0.4 4,446,261 - +1.6 4,446,280 - ECD_04177 0.11 -1.7 4,446,386 - ECD_04177 0.20 +1.8 4,446,516 - ECD_04177 0.32 -0.1 4,446,762 - ECD_04177 0.54 -0.5 4,446,847 + ECD_04177 0.62 +2.0 4,446,848 - ECD_04177 0.62 +1.7 4,446,940 + ECD_04177 0.70 +2.2 4,446,941 - ECD_04177 0.70 -1.7 4,446,949 - ECD_04177 0.71 +2.0 4,447,022 + ECD_04177 0.78 +1.0 4,447,377 - ECD_04178 0.12 -2.2 4,447,393 - ECD_04178 0.15 -0.5 4,447,485 - ECD_04178 0.27 -2.5 4,447,486 + ECD_04178 0.28 +2.0 4,447,521 + ECD_04178 0.32 -0.0 4,447,530 - ECD_04178 0.34 +0.1
Or see this region's nucleotide sequence