Strain Fitness in Escherichia coli BL21 around ECD_04073

Experiment: Bas49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04072 and ECD_04073 overlap by 4 nucleotidesECD_04073 and ECD_04074 are separated by 9 nucleotidesECD_04074 and ECD_04075 are separated by 9 nucleotides ECD_04072: ECD_04072 - putative oxidoreductase, at 4,334,549 to 4,336,621 _04072 ECD_04073: ECD_04073 - putative acetyl-CoA:acetoacetyl-CoA transferase, at 4,336,618 to 4,338,159 _04073 ECD_04074: ECD_04074 - hypothetical protein, at 4,338,169 to 4,338,945 _04074 ECD_04075: ECD_04075 - hypothetical protein, at 4,338,955 to 4,339,797 _04075 Position (kb) 4336 4337 4338 4339Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4335.695 kb on - strand, within ECD_04072at 4335.696 kb on + strand, within ECD_04072at 4335.723 kb on + strand, within ECD_04072at 4335.727 kb on + strand, within ECD_04072at 4335.727 kb on + strand, within ECD_04072at 4335.728 kb on - strand, within ECD_04072at 4335.728 kb on - strand, within ECD_04072at 4335.729 kb on + strand, within ECD_04072at 4335.730 kb on - strand, within ECD_04072at 4335.730 kb on - strand, within ECD_04072at 4335.730 kb on - strand, within ECD_04072at 4335.743 kb on + strand, within ECD_04072at 4335.743 kb on + strand, within ECD_04072at 4335.743 kb on + strand, within ECD_04072at 4335.743 kb on + strand, within ECD_04072at 4335.744 kb on - strand, within ECD_04072at 4335.747 kb on + strand, within ECD_04072at 4335.747 kb on + strand, within ECD_04072at 4335.747 kb on + strand, within ECD_04072at 4335.747 kb on + strand, within ECD_04072at 4335.747 kb on + strand, within ECD_04072at 4335.747 kb on + strand, within ECD_04072at 4335.748 kb on - strand, within ECD_04072at 4335.748 kb on - strand, within ECD_04072at 4335.748 kb on - strand, within ECD_04072at 4335.791 kb on + strand, within ECD_04072at 4335.921 kb on - strand, within ECD_04072at 4336.039 kb on + strand, within ECD_04072at 4336.218 kb on + strand, within ECD_04072at 4336.218 kb on + strand, within ECD_04072at 4336.219 kb on - strand, within ECD_04072at 4336.251 kb on - strand, within ECD_04072at 4336.264 kb on - strand, within ECD_04072at 4336.264 kb on - strand, within ECD_04072at 4336.396 kb on + strand, within ECD_04072at 4336.396 kb on + strand, within ECD_04072at 4336.396 kb on + strand, within ECD_04072at 4336.397 kb on - strand, within ECD_04072at 4336.397 kb on - strand, within ECD_04072at 4336.398 kb on + strand, within ECD_04072at 4336.398 kb on + strand, within ECD_04072at 4336.398 kb on + strand, within ECD_04072at 4336.398 kb on + strand, within ECD_04072at 4336.398 kb on + strand, within ECD_04072at 4336.399 kb on - strand, within ECD_04072at 4336.399 kb on - strand, within ECD_04072at 4336.399 kb on - strand, within ECD_04072at 4336.399 kb on - strand, within ECD_04072at 4336.399 kb on - strand, within ECD_04072at 4336.399 kb on - strand, within ECD_04072at 4336.399 kb on - strand, within ECD_04072at 4336.399 kb on - strand, within ECD_04072at 4336.399 kb on - strand, within ECD_04072at 4336.399 kb on - strand, within ECD_04072at 4336.399 kb on - strand, within ECD_04072at 4336.399 kb on - strand, within ECD_04072at 4336.400 kb on + strand, within ECD_04072at 4336.401 kb on - strand, within ECD_04072at 4336.401 kb on - strand, within ECD_04072at 4336.401 kb on - strand, within ECD_04072at 4336.484 kb on + strandat 4336.485 kb on - strandat 4336.513 kb on - strandat 4336.576 kb on + strandat 4336.576 kb on + strandat 4336.576 kb on + strandat 4336.577 kb on - strandat 4336.647 kb on + strandat 4336.675 kb on - strandat 4336.694 kb on + strandat 4336.694 kb on + strandat 4336.695 kb on - strandat 4336.791 kb on - strand, within ECD_04073at 4336.791 kb on - strand, within ECD_04073at 4336.887 kb on + strand, within ECD_04073at 4336.906 kb on + strand, within ECD_04073at 4336.957 kb on - strand, within ECD_04073at 4337.090 kb on + strand, within ECD_04073at 4337.090 kb on + strand, within ECD_04073at 4337.091 kb on - strand, within ECD_04073at 4337.091 kb on - strand, within ECD_04073at 4337.091 kb on - strand, within ECD_04073at 4337.175 kb on + strand, within ECD_04073at 4337.175 kb on + strand, within ECD_04073at 4337.176 kb on - strand, within ECD_04073at 4337.179 kb on + strand, within ECD_04073at 4337.179 kb on + strand, within ECD_04073at 4337.180 kb on - strand, within ECD_04073at 4337.180 kb on - strand, within ECD_04073at 4337.361 kb on + strand, within ECD_04073at 4337.522 kb on - strand, within ECD_04073at 4337.567 kb on + strand, within ECD_04073at 4337.567 kb on + strand, within ECD_04073at 4337.568 kb on - strand, within ECD_04073at 4337.568 kb on - strand, within ECD_04073at 4337.571 kb on + strand, within ECD_04073at 4337.624 kb on + strand, within ECD_04073at 4337.624 kb on + strand, within ECD_04073at 4337.624 kb on + strand, within ECD_04073at 4337.625 kb on - strand, within ECD_04073at 4337.705 kb on - strand, within ECD_04073at 4337.719 kb on - strand, within ECD_04073at 4337.852 kb on + strand, within ECD_04073at 4337.920 kb on - strand, within ECD_04073at 4337.955 kb on + strand, within ECD_04073at 4338.057 kb on + strandat 4338.057 kb on + strandat 4338.097 kb on - strandat 4338.097 kb on - strandat 4338.154 kb on - strandat 4338.285 kb on + strand, within ECD_04074at 4338.286 kb on - strand, within ECD_04074at 4338.312 kb on + strand, within ECD_04074at 4338.312 kb on + strand, within ECD_04074at 4338.313 kb on - strand, within ECD_04074at 4338.313 kb on - strand, within ECD_04074at 4338.313 kb on - strand, within ECD_04074at 4338.409 kb on + strand, within ECD_04074at 4338.577 kb on - strand, within ECD_04074at 4338.607 kb on - strand, within ECD_04074at 4338.711 kb on + strand, within ECD_04074at 4338.742 kb on - strand, within ECD_04074at 4338.876 kb on + strandat 4338.877 kb on - strandat 4339.048 kb on - strand, within ECD_04075at 4339.154 kb on - strand, within ECD_04075

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas49
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4,335,695 - ECD_04072 0.55 -0.2
4,335,696 + ECD_04072 0.55 -0.0
4,335,723 + ECD_04072 0.57 +0.3
4,335,727 + ECD_04072 0.57 +0.8
4,335,727 + ECD_04072 0.57 -1.2
4,335,728 - ECD_04072 0.57 +0.6
4,335,728 - ECD_04072 0.57 -2.9
4,335,729 + ECD_04072 0.57 -1.9
4,335,730 - ECD_04072 0.57 +0.0
4,335,730 - ECD_04072 0.57 -1.3
4,335,730 - ECD_04072 0.57 +0.6
4,335,743 + ECD_04072 0.58 +2.3
4,335,743 + ECD_04072 0.58 +1.8
4,335,743 + ECD_04072 0.58 -1.2
4,335,743 + ECD_04072 0.58 -0.1
4,335,744 - ECD_04072 0.58 -2.6
4,335,747 + ECD_04072 0.58 -1.5
4,335,747 + ECD_04072 0.58 +0.5
4,335,747 + ECD_04072 0.58 +1.5
4,335,747 + ECD_04072 0.58 +1.4
4,335,747 + ECD_04072 0.58 -1.2
4,335,747 + ECD_04072 0.58 +0.7
4,335,748 - ECD_04072 0.58 -0.1
4,335,748 - ECD_04072 0.58 -1.6
4,335,748 - ECD_04072 0.58 -1.0
4,335,791 + ECD_04072 0.60 +1.1
4,335,921 - ECD_04072 0.66 +2.4
4,336,039 + ECD_04072 0.72 +0.0
4,336,218 + ECD_04072 0.81 -2.0
4,336,218 + ECD_04072 0.81 -0.1
4,336,219 - ECD_04072 0.81 +1.2
4,336,251 - ECD_04072 0.82 -0.7
4,336,264 - ECD_04072 0.83 -3.1
4,336,264 - ECD_04072 0.83 -1.0
4,336,396 + ECD_04072 0.89 +0.5
4,336,396 + ECD_04072 0.89 -2.6
4,336,396 + ECD_04072 0.89 -0.4
4,336,397 - ECD_04072 0.89 +0.7
4,336,397 - ECD_04072 0.89 +0.0
4,336,398 + ECD_04072 0.89 +0.4
4,336,398 + ECD_04072 0.89 -0.7
4,336,398 + ECD_04072 0.89 +1.6
4,336,398 + ECD_04072 0.89 -0.4
4,336,398 + ECD_04072 0.89 +1.8
4,336,399 - ECD_04072 0.89 +0.8
4,336,399 - ECD_04072 0.89 +0.8
4,336,399 - ECD_04072 0.89 -0.7
4,336,399 - ECD_04072 0.89 -1.0
4,336,399 - ECD_04072 0.89 -2.7
4,336,399 - ECD_04072 0.89 -0.3
4,336,399 - ECD_04072 0.89 -1.0
4,336,399 - ECD_04072 0.89 +0.8
4,336,399 - ECD_04072 0.89 -0.3
4,336,399 - ECD_04072 0.89 -0.4
4,336,399 - ECD_04072 0.89 +0.3
4,336,399 - ECD_04072 0.89 -0.3
4,336,400 + ECD_04072 0.89 -0.6
4,336,401 - ECD_04072 0.89 +0.6
4,336,401 - ECD_04072 0.89 -0.5
4,336,401 - ECD_04072 0.89 -0.2
4,336,484 + +0.8
4,336,485 - +0.2
4,336,513 - -1.2
4,336,576 + +2.0
4,336,576 + +1.3
4,336,576 + +1.8
4,336,577 - -1.5
4,336,647 + +0.7
4,336,675 - -1.3
4,336,694 + -1.3
4,336,694 + +1.8
4,336,695 - -0.2
4,336,791 - ECD_04073 0.11 -1.0
4,336,791 - ECD_04073 0.11 +0.8
4,336,887 + ECD_04073 0.17 +1.1
4,336,906 + ECD_04073 0.19 +1.3
4,336,957 - ECD_04073 0.22 +1.3
4,337,090 + ECD_04073 0.31 +0.4
4,337,090 + ECD_04073 0.31 +0.3
4,337,091 - ECD_04073 0.31 +1.0
4,337,091 - ECD_04073 0.31 -3.2
4,337,091 - ECD_04073 0.31 -1.4
4,337,175 + ECD_04073 0.36 -0.5
4,337,175 + ECD_04073 0.36 -1.1
4,337,176 - ECD_04073 0.36 -2.0
4,337,179 + ECD_04073 0.36 +0.8
4,337,179 + ECD_04073 0.36 -1.5
4,337,180 - ECD_04073 0.36 -1.0
4,337,180 - ECD_04073 0.36 -1.6
4,337,361 + ECD_04073 0.48 -2.0
4,337,522 - ECD_04073 0.59 +0.8
4,337,567 + ECD_04073 0.62 -0.5
4,337,567 + ECD_04073 0.62 -0.1
4,337,568 - ECD_04073 0.62 -0.9
4,337,568 - ECD_04073 0.62 -0.4
4,337,571 + ECD_04073 0.62 +1.1
4,337,624 + ECD_04073 0.65 -0.2
4,337,624 + ECD_04073 0.65 -0.5
4,337,624 + ECD_04073 0.65 -2.0
4,337,625 - ECD_04073 0.65 -0.7
4,337,705 - ECD_04073 0.70 -0.9
4,337,719 - ECD_04073 0.71 -1.0
4,337,852 + ECD_04073 0.80 -1.9
4,337,920 - ECD_04073 0.84 +1.5
4,337,955 + ECD_04073 0.87 +1.5
4,338,057 + -0.5
4,338,057 + -1.5
4,338,097 - +2.3
4,338,097 - -0.9
4,338,154 - +0.6
4,338,285 + ECD_04074 0.15 +0.7
4,338,286 - ECD_04074 0.15 -2.5
4,338,312 + ECD_04074 0.18 +0.1
4,338,312 + ECD_04074 0.18 +1.0
4,338,313 - ECD_04074 0.19 -0.9
4,338,313 - ECD_04074 0.19 -0.0
4,338,313 - ECD_04074 0.19 -1.1
4,338,409 + ECD_04074 0.31 -1.7
4,338,577 - ECD_04074 0.53 +1.9
4,338,607 - ECD_04074 0.56 +0.3
4,338,711 + ECD_04074 0.70 -1.7
4,338,742 - ECD_04074 0.74 -2.2
4,338,876 + +0.7
4,338,877 - -1.3
4,339,048 - ECD_04075 0.11 -1.7
4,339,154 - ECD_04075 0.24 +0.1

Or see this region's nucleotide sequence