Experiment: Bas49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03576 and ECD_03577 overlap by 17 nucleotides ECD_03577 and ECD_03578 overlap by 4 nucleotides ECD_03578 and ECD_03579 are separated by 277 nucleotides ECD_03579 and ECD_03580 are separated by 45 nucleotides
ECD_03576: ECD_03576 - 2-oxo-3-deoxygalactonate 6-phosphate aldolase, at 3,761,791 to 3,762,408
_03576
ECD_03577: ECD_03577 - 2-oxo-3-deoxygalactonate kinase, at 3,762,392 to 3,763,270
_03577
ECD_03578: ECD_03578 - D-galactonate catabolism operon transcriptional repressor, at 3,763,267 to 3,763,956
_03578
ECD_03579: ECD_03579 - putative lipoprotein, at 3,764,234 to 3,764,890
_03579
ECD_03580: ECD_03580 - sugar phosphate phosphatase, at 3,764,936 to 3,765,748
_03580
Position (kb)
3763
3764 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3762.360 kb on + strand at 3762.422 kb on + strand at 3762.423 kb on - strand at 3762.423 kb on - strand at 3762.425 kb on - strand at 3762.552 kb on + strand, within ECD_03577 at 3762.552 kb on + strand, within ECD_03577 at 3762.552 kb on + strand, within ECD_03577 at 3762.553 kb on - strand, within ECD_03577 at 3762.553 kb on - strand, within ECD_03577 at 3762.553 kb on - strand, within ECD_03577 at 3762.553 kb on - strand, within ECD_03577 at 3762.672 kb on - strand, within ECD_03577 at 3762.685 kb on + strand, within ECD_03577 at 3762.685 kb on + strand, within ECD_03577 at 3762.686 kb on - strand, within ECD_03577 at 3762.686 kb on - strand, within ECD_03577 at 3762.773 kb on + strand, within ECD_03577 at 3762.774 kb on - strand, within ECD_03577 at 3762.774 kb on - strand, within ECD_03577 at 3762.774 kb on - strand, within ECD_03577 at 3762.868 kb on - strand, within ECD_03577 at 3762.868 kb on - strand, within ECD_03577 at 3762.977 kb on - strand, within ECD_03577 at 3762.996 kb on - strand, within ECD_03577 at 3763.009 kb on + strand, within ECD_03577 at 3763.034 kb on + strand, within ECD_03577 at 3763.096 kb on + strand, within ECD_03577 at 3763.212 kb on + strand at 3763.257 kb on + strand at 3763.258 kb on - strand at 3763.294 kb on - strand at 3763.312 kb on - strand at 3763.371 kb on + strand, within ECD_03578 at 3763.372 kb on - strand, within ECD_03578 at 3763.372 kb on - strand, within ECD_03578 at 3763.372 kb on - strand, within ECD_03578 at 3763.372 kb on - strand, within ECD_03578 at 3763.461 kb on + strand, within ECD_03578 at 3763.462 kb on - strand, within ECD_03578 at 3763.462 kb on - strand, within ECD_03578 at 3763.472 kb on - strand, within ECD_03578 at 3763.472 kb on - strand, within ECD_03578 at 3763.675 kb on - strand, within ECD_03578 at 3763.688 kb on + strand, within ECD_03578 at 3763.689 kb on - strand, within ECD_03578 at 3763.714 kb on + strand, within ECD_03578 at 3763.715 kb on - strand, within ECD_03578 at 3763.731 kb on - strand, within ECD_03578 at 3763.888 kb on + strand at 3763.892 kb on + strand at 3763.892 kb on + strand at 3763.892 kb on + strand at 3763.892 kb on + strand at 3763.893 kb on - strand at 3763.893 kb on - strand at 3763.893 kb on - strand at 3763.924 kb on - strand at 3763.944 kb on + strand at 3763.945 kb on - strand at 3763.977 kb on - strand at 3763.977 kb on - strand at 3763.977 kb on - strand at 3763.977 kb on - strand at 3763.988 kb on + strand at 3763.988 kb on + strand at 3763.988 kb on + strand at 3763.988 kb on + strand at 3764.009 kb on + strand at 3764.194 kb on - strand at 3764.209 kb on + strand at 3764.210 kb on - strand at 3764.214 kb on - strand at 3764.229 kb on + strand at 3764.274 kb on + strand at 3764.313 kb on - strand, within ECD_03579 at 3764.401 kb on + strand, within ECD_03579 at 3764.402 kb on - strand, within ECD_03579 at 3764.402 kb on - strand, within ECD_03579 at 3764.405 kb on - strand, within ECD_03579 at 3764.447 kb on + strand, within ECD_03579 at 3764.448 kb on - strand, within ECD_03579 at 3764.491 kb on + strand, within ECD_03579 at 3764.492 kb on - strand, within ECD_03579 at 3764.504 kb on - strand, within ECD_03579 at 3764.548 kb on - strand, within ECD_03579 at 3764.589 kb on - strand, within ECD_03579 at 3764.589 kb on - strand, within ECD_03579 at 3764.591 kb on + strand, within ECD_03579 at 3764.591 kb on + strand, within ECD_03579 at 3764.591 kb on + strand, within ECD_03579 at 3764.594 kb on + strand, within ECD_03579 at 3764.603 kb on - strand, within ECD_03579 at 3764.633 kb on + strand, within ECD_03579 at 3764.633 kb on + strand, within ECD_03579 at 3764.663 kb on - strand, within ECD_03579 at 3764.663 kb on - strand, within ECD_03579 at 3764.683 kb on - strand, within ECD_03579 at 3764.741 kb on + strand, within ECD_03579 at 3764.742 kb on - strand, within ECD_03579 at 3764.752 kb on + strand, within ECD_03579 at 3764.752 kb on + strand, within ECD_03579 at 3764.753 kb on - strand, within ECD_03579 at 3764.766 kb on - strand, within ECD_03579 at 3764.771 kb on + strand, within ECD_03579 at 3764.771 kb on + strand, within ECD_03579 at 3764.771 kb on + strand, within ECD_03579 at 3764.772 kb on - strand, within ECD_03579 at 3764.772 kb on - strand, within ECD_03579 at 3764.772 kb on - strand, within ECD_03579 at 3764.772 kb on - strand, within ECD_03579 at 3764.774 kb on + strand, within ECD_03579 at 3764.775 kb on - strand, within ECD_03579 at 3764.775 kb on - strand, within ECD_03579 at 3764.775 kb on - strand, within ECD_03579 at 3764.814 kb on + strand, within ECD_03579 at 3764.845 kb on + strand at 3764.846 kb on - strand at 3764.871 kb on + strand at 3764.871 kb on + strand at 3764.871 kb on + strand at 3764.871 kb on + strand at 3764.871 kb on + strand at 3764.871 kb on + strand at 3764.872 kb on - strand at 3764.872 kb on - strand at 3764.872 kb on - strand at 3764.872 kb on - strand at 3764.872 kb on - strand at 3764.873 kb on + strand at 3764.873 kb on + strand at 3764.874 kb on - strand at 3764.880 kb on + strand at 3764.889 kb on - strand at 3764.938 kb on - strand at 3764.938 kb on - strand at 3764.938 kb on - strand at 3764.949 kb on + strand at 3764.949 kb on + strand at 3764.949 kb on + strand at 3764.949 kb on + strand at 3764.949 kb on + strand at 3764.950 kb on - strand at 3764.950 kb on - strand at 3764.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas49 remove 3,762,360 + -1.1 3,762,422 + -0.9 3,762,423 - +2.6 3,762,423 - +1.1 3,762,425 - -0.9 3,762,552 + ECD_03577 0.18 +0.7 3,762,552 + ECD_03577 0.18 +2.5 3,762,552 + ECD_03577 0.18 +0.4 3,762,553 - ECD_03577 0.18 +2.3 3,762,553 - ECD_03577 0.18 +0.6 3,762,553 - ECD_03577 0.18 +0.1 3,762,553 - ECD_03577 0.18 -0.8 3,762,672 - ECD_03577 0.32 -0.2 3,762,685 + ECD_03577 0.33 +0.1 3,762,685 + ECD_03577 0.33 +1.2 3,762,686 - ECD_03577 0.33 +1.4 3,762,686 - ECD_03577 0.33 +1.5 3,762,773 + ECD_03577 0.43 +1.1 3,762,774 - ECD_03577 0.43 +0.4 3,762,774 - ECD_03577 0.43 +0.6 3,762,774 - ECD_03577 0.43 +0.5 3,762,868 - ECD_03577 0.54 +1.9 3,762,868 - ECD_03577 0.54 -0.4 3,762,977 - ECD_03577 0.67 -0.9 3,762,996 - ECD_03577 0.69 +1.0 3,763,009 + ECD_03577 0.70 +0.1 3,763,034 + ECD_03577 0.73 +2.7 3,763,096 + ECD_03577 0.80 +1.5 3,763,212 + -0.9 3,763,257 + +1.6 3,763,258 - +0.3 3,763,294 - +0.1 3,763,312 - +1.0 3,763,371 + ECD_03578 0.15 -0.2 3,763,372 - ECD_03578 0.15 +2.1 3,763,372 - ECD_03578 0.15 +2.0 3,763,372 - ECD_03578 0.15 +1.6 3,763,372 - ECD_03578 0.15 +0.9 3,763,461 + ECD_03578 0.28 +3.5 3,763,462 - ECD_03578 0.28 +1.6 3,763,462 - ECD_03578 0.28 +2.4 3,763,472 - ECD_03578 0.30 +0.3 3,763,472 - ECD_03578 0.30 +2.7 3,763,675 - ECD_03578 0.59 +3.3 3,763,688 + ECD_03578 0.61 +0.8 3,763,689 - ECD_03578 0.61 +0.9 3,763,714 + ECD_03578 0.65 +1.0 3,763,715 - ECD_03578 0.65 +0.9 3,763,731 - ECD_03578 0.67 +1.1 3,763,888 + +2.2 3,763,892 + +0.7 3,763,892 + +1.4 3,763,892 + +1.0 3,763,892 + -1.0 3,763,893 - -0.1 3,763,893 - +1.0 3,763,893 - +0.3 3,763,924 - +1.0 3,763,944 + +1.7 3,763,945 - -1.1 3,763,977 - +1.5 3,763,977 - +0.3 3,763,977 - -1.5 3,763,977 - +0.7 3,763,988 + -1.1 3,763,988 + +1.0 3,763,988 + +1.2 3,763,988 + +0.7 3,764,009 + -0.9 3,764,194 - +1.4 3,764,209 + -0.9 3,764,210 - +1.1 3,764,214 - +0.5 3,764,229 + +1.2 3,764,274 + +1.5 3,764,313 - ECD_03579 0.12 +1.4 3,764,401 + ECD_03579 0.25 -0.3 3,764,402 - ECD_03579 0.26 -0.3 3,764,402 - ECD_03579 0.26 +2.1 3,764,405 - ECD_03579 0.26 +2.4 3,764,447 + ECD_03579 0.32 +1.2 3,764,448 - ECD_03579 0.33 -1.7 3,764,491 + ECD_03579 0.39 +1.4 3,764,492 - ECD_03579 0.39 +0.4 3,764,504 - ECD_03579 0.41 -0.2 3,764,548 - ECD_03579 0.48 +0.0 3,764,589 - ECD_03579 0.54 -0.9 3,764,589 - ECD_03579 0.54 +0.6 3,764,591 + ECD_03579 0.54 +2.1 3,764,591 + ECD_03579 0.54 -0.4 3,764,591 + ECD_03579 0.54 +1.7 3,764,594 + ECD_03579 0.55 +0.7 3,764,603 - ECD_03579 0.56 -2.4 3,764,633 + ECD_03579 0.61 +1.6 3,764,633 + ECD_03579 0.61 -0.9 3,764,663 - ECD_03579 0.65 -1.3 3,764,663 - ECD_03579 0.65 -0.4 3,764,683 - ECD_03579 0.68 +1.1 3,764,741 + ECD_03579 0.77 +0.4 3,764,742 - ECD_03579 0.77 +1.5 3,764,752 + ECD_03579 0.79 +0.1 3,764,752 + ECD_03579 0.79 +1.0 3,764,753 - ECD_03579 0.79 +0.7 3,764,766 - ECD_03579 0.81 +1.8 3,764,771 + ECD_03579 0.82 +0.6 3,764,771 + ECD_03579 0.82 -0.5 3,764,771 + ECD_03579 0.82 +1.7 3,764,772 - ECD_03579 0.82 +1.2 3,764,772 - ECD_03579 0.82 -1.9 3,764,772 - ECD_03579 0.82 -0.6 3,764,772 - ECD_03579 0.82 +0.2 3,764,774 + ECD_03579 0.82 +1.0 3,764,775 - ECD_03579 0.82 -2.3 3,764,775 - ECD_03579 0.82 -0.1 3,764,775 - ECD_03579 0.82 +0.8 3,764,814 + ECD_03579 0.88 +0.6 3,764,845 + -1.8 3,764,846 - -0.1 3,764,871 + +0.2 3,764,871 + -2.5 3,764,871 + +1.7 3,764,871 + +0.7 3,764,871 + +0.4 3,764,871 + +1.6 3,764,872 - +0.9 3,764,872 - -0.5 3,764,872 - +0.1 3,764,872 - -0.3 3,764,872 - +2.7 3,764,873 + +0.9 3,764,873 + +1.7 3,764,874 - -0.4 3,764,880 + +0.8 3,764,889 - -0.0 3,764,938 - +1.0 3,764,938 - +0.7 3,764,938 - +0.3 3,764,949 + -2.6 3,764,949 + +0.1 3,764,949 + +0.6 3,764,949 + -2.4 3,764,949 + +1.0 3,764,950 - +1.1 3,764,950 - -0.1 3,764,950 - -1.3
Or see this region's nucleotide sequence