Strain Fitness in Escherichia coli BL21 around ECD_03578

Experiment: Bas49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03576 and ECD_03577 overlap by 17 nucleotidesECD_03577 and ECD_03578 overlap by 4 nucleotidesECD_03578 and ECD_03579 are separated by 277 nucleotidesECD_03579 and ECD_03580 are separated by 45 nucleotides ECD_03576: ECD_03576 - 2-oxo-3-deoxygalactonate 6-phosphate aldolase, at 3,761,791 to 3,762,408 _03576 ECD_03577: ECD_03577 - 2-oxo-3-deoxygalactonate kinase, at 3,762,392 to 3,763,270 _03577 ECD_03578: ECD_03578 - D-galactonate catabolism operon transcriptional repressor, at 3,763,267 to 3,763,956 _03578 ECD_03579: ECD_03579 - putative lipoprotein, at 3,764,234 to 3,764,890 _03579 ECD_03580: ECD_03580 - sugar phosphate phosphatase, at 3,764,936 to 3,765,748 _03580 Position (kb) 3763 3764Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3762.360 kb on + strandat 3762.422 kb on + strandat 3762.423 kb on - strandat 3762.423 kb on - strandat 3762.425 kb on - strandat 3762.552 kb on + strand, within ECD_03577at 3762.552 kb on + strand, within ECD_03577at 3762.552 kb on + strand, within ECD_03577at 3762.553 kb on - strand, within ECD_03577at 3762.553 kb on - strand, within ECD_03577at 3762.553 kb on - strand, within ECD_03577at 3762.553 kb on - strand, within ECD_03577at 3762.672 kb on - strand, within ECD_03577at 3762.685 kb on + strand, within ECD_03577at 3762.685 kb on + strand, within ECD_03577at 3762.686 kb on - strand, within ECD_03577at 3762.686 kb on - strand, within ECD_03577at 3762.773 kb on + strand, within ECD_03577at 3762.774 kb on - strand, within ECD_03577at 3762.774 kb on - strand, within ECD_03577at 3762.774 kb on - strand, within ECD_03577at 3762.868 kb on - strand, within ECD_03577at 3762.868 kb on - strand, within ECD_03577at 3762.977 kb on - strand, within ECD_03577at 3762.996 kb on - strand, within ECD_03577at 3763.009 kb on + strand, within ECD_03577at 3763.034 kb on + strand, within ECD_03577at 3763.096 kb on + strand, within ECD_03577at 3763.212 kb on + strandat 3763.257 kb on + strandat 3763.258 kb on - strandat 3763.294 kb on - strandat 3763.312 kb on - strandat 3763.371 kb on + strand, within ECD_03578at 3763.372 kb on - strand, within ECD_03578at 3763.372 kb on - strand, within ECD_03578at 3763.372 kb on - strand, within ECD_03578at 3763.372 kb on - strand, within ECD_03578at 3763.461 kb on + strand, within ECD_03578at 3763.462 kb on - strand, within ECD_03578at 3763.462 kb on - strand, within ECD_03578at 3763.472 kb on - strand, within ECD_03578at 3763.472 kb on - strand, within ECD_03578at 3763.675 kb on - strand, within ECD_03578at 3763.688 kb on + strand, within ECD_03578at 3763.689 kb on - strand, within ECD_03578at 3763.714 kb on + strand, within ECD_03578at 3763.715 kb on - strand, within ECD_03578at 3763.731 kb on - strand, within ECD_03578at 3763.888 kb on + strandat 3763.892 kb on + strandat 3763.892 kb on + strandat 3763.892 kb on + strandat 3763.892 kb on + strandat 3763.893 kb on - strandat 3763.893 kb on - strandat 3763.893 kb on - strandat 3763.924 kb on - strandat 3763.944 kb on + strandat 3763.945 kb on - strandat 3763.977 kb on - strandat 3763.977 kb on - strandat 3763.977 kb on - strandat 3763.977 kb on - strandat 3763.988 kb on + strandat 3763.988 kb on + strandat 3763.988 kb on + strandat 3763.988 kb on + strandat 3764.009 kb on + strandat 3764.194 kb on - strandat 3764.209 kb on + strandat 3764.210 kb on - strandat 3764.214 kb on - strandat 3764.229 kb on + strandat 3764.274 kb on + strandat 3764.313 kb on - strand, within ECD_03579at 3764.401 kb on + strand, within ECD_03579at 3764.402 kb on - strand, within ECD_03579at 3764.402 kb on - strand, within ECD_03579at 3764.405 kb on - strand, within ECD_03579at 3764.447 kb on + strand, within ECD_03579at 3764.448 kb on - strand, within ECD_03579at 3764.491 kb on + strand, within ECD_03579at 3764.492 kb on - strand, within ECD_03579at 3764.504 kb on - strand, within ECD_03579at 3764.548 kb on - strand, within ECD_03579at 3764.589 kb on - strand, within ECD_03579at 3764.589 kb on - strand, within ECD_03579at 3764.591 kb on + strand, within ECD_03579at 3764.591 kb on + strand, within ECD_03579at 3764.591 kb on + strand, within ECD_03579at 3764.594 kb on + strand, within ECD_03579at 3764.603 kb on - strand, within ECD_03579at 3764.633 kb on + strand, within ECD_03579at 3764.633 kb on + strand, within ECD_03579at 3764.663 kb on - strand, within ECD_03579at 3764.663 kb on - strand, within ECD_03579at 3764.683 kb on - strand, within ECD_03579at 3764.741 kb on + strand, within ECD_03579at 3764.742 kb on - strand, within ECD_03579at 3764.752 kb on + strand, within ECD_03579at 3764.752 kb on + strand, within ECD_03579at 3764.753 kb on - strand, within ECD_03579at 3764.766 kb on - strand, within ECD_03579at 3764.771 kb on + strand, within ECD_03579at 3764.771 kb on + strand, within ECD_03579at 3764.771 kb on + strand, within ECD_03579at 3764.772 kb on - strand, within ECD_03579at 3764.772 kb on - strand, within ECD_03579at 3764.772 kb on - strand, within ECD_03579at 3764.772 kb on - strand, within ECD_03579at 3764.774 kb on + strand, within ECD_03579at 3764.775 kb on - strand, within ECD_03579at 3764.775 kb on - strand, within ECD_03579at 3764.775 kb on - strand, within ECD_03579at 3764.814 kb on + strand, within ECD_03579at 3764.845 kb on + strandat 3764.846 kb on - strandat 3764.871 kb on + strandat 3764.871 kb on + strandat 3764.871 kb on + strandat 3764.871 kb on + strandat 3764.871 kb on + strandat 3764.871 kb on + strandat 3764.872 kb on - strandat 3764.872 kb on - strandat 3764.872 kb on - strandat 3764.872 kb on - strandat 3764.872 kb on - strandat 3764.873 kb on + strandat 3764.873 kb on + strandat 3764.874 kb on - strandat 3764.880 kb on + strandat 3764.889 kb on - strandat 3764.938 kb on - strandat 3764.938 kb on - strandat 3764.938 kb on - strandat 3764.949 kb on + strandat 3764.949 kb on + strandat 3764.949 kb on + strandat 3764.949 kb on + strandat 3764.949 kb on + strandat 3764.950 kb on - strandat 3764.950 kb on - strandat 3764.950 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas49
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3,762,360 + -1.1
3,762,422 + -0.9
3,762,423 - +2.6
3,762,423 - +1.1
3,762,425 - -0.9
3,762,552 + ECD_03577 0.18 +0.7
3,762,552 + ECD_03577 0.18 +2.5
3,762,552 + ECD_03577 0.18 +0.4
3,762,553 - ECD_03577 0.18 +2.3
3,762,553 - ECD_03577 0.18 +0.6
3,762,553 - ECD_03577 0.18 +0.1
3,762,553 - ECD_03577 0.18 -0.8
3,762,672 - ECD_03577 0.32 -0.2
3,762,685 + ECD_03577 0.33 +0.1
3,762,685 + ECD_03577 0.33 +1.2
3,762,686 - ECD_03577 0.33 +1.4
3,762,686 - ECD_03577 0.33 +1.5
3,762,773 + ECD_03577 0.43 +1.1
3,762,774 - ECD_03577 0.43 +0.4
3,762,774 - ECD_03577 0.43 +0.6
3,762,774 - ECD_03577 0.43 +0.5
3,762,868 - ECD_03577 0.54 +1.9
3,762,868 - ECD_03577 0.54 -0.4
3,762,977 - ECD_03577 0.67 -0.9
3,762,996 - ECD_03577 0.69 +1.0
3,763,009 + ECD_03577 0.70 +0.1
3,763,034 + ECD_03577 0.73 +2.7
3,763,096 + ECD_03577 0.80 +1.5
3,763,212 + -0.9
3,763,257 + +1.6
3,763,258 - +0.3
3,763,294 - +0.1
3,763,312 - +1.0
3,763,371 + ECD_03578 0.15 -0.2
3,763,372 - ECD_03578 0.15 +2.1
3,763,372 - ECD_03578 0.15 +2.0
3,763,372 - ECD_03578 0.15 +1.6
3,763,372 - ECD_03578 0.15 +0.9
3,763,461 + ECD_03578 0.28 +3.5
3,763,462 - ECD_03578 0.28 +1.6
3,763,462 - ECD_03578 0.28 +2.4
3,763,472 - ECD_03578 0.30 +0.3
3,763,472 - ECD_03578 0.30 +2.7
3,763,675 - ECD_03578 0.59 +3.3
3,763,688 + ECD_03578 0.61 +0.8
3,763,689 - ECD_03578 0.61 +0.9
3,763,714 + ECD_03578 0.65 +1.0
3,763,715 - ECD_03578 0.65 +0.9
3,763,731 - ECD_03578 0.67 +1.1
3,763,888 + +2.2
3,763,892 + +0.7
3,763,892 + +1.4
3,763,892 + +1.0
3,763,892 + -1.0
3,763,893 - -0.1
3,763,893 - +1.0
3,763,893 - +0.3
3,763,924 - +1.0
3,763,944 + +1.7
3,763,945 - -1.1
3,763,977 - +1.5
3,763,977 - +0.3
3,763,977 - -1.5
3,763,977 - +0.7
3,763,988 + -1.1
3,763,988 + +1.0
3,763,988 + +1.2
3,763,988 + +0.7
3,764,009 + -0.9
3,764,194 - +1.4
3,764,209 + -0.9
3,764,210 - +1.1
3,764,214 - +0.5
3,764,229 + +1.2
3,764,274 + +1.5
3,764,313 - ECD_03579 0.12 +1.4
3,764,401 + ECD_03579 0.25 -0.3
3,764,402 - ECD_03579 0.26 -0.3
3,764,402 - ECD_03579 0.26 +2.1
3,764,405 - ECD_03579 0.26 +2.4
3,764,447 + ECD_03579 0.32 +1.2
3,764,448 - ECD_03579 0.33 -1.7
3,764,491 + ECD_03579 0.39 +1.4
3,764,492 - ECD_03579 0.39 +0.4
3,764,504 - ECD_03579 0.41 -0.2
3,764,548 - ECD_03579 0.48 +0.0
3,764,589 - ECD_03579 0.54 -0.9
3,764,589 - ECD_03579 0.54 +0.6
3,764,591 + ECD_03579 0.54 +2.1
3,764,591 + ECD_03579 0.54 -0.4
3,764,591 + ECD_03579 0.54 +1.7
3,764,594 + ECD_03579 0.55 +0.7
3,764,603 - ECD_03579 0.56 -2.4
3,764,633 + ECD_03579 0.61 +1.6
3,764,633 + ECD_03579 0.61 -0.9
3,764,663 - ECD_03579 0.65 -1.3
3,764,663 - ECD_03579 0.65 -0.4
3,764,683 - ECD_03579 0.68 +1.1
3,764,741 + ECD_03579 0.77 +0.4
3,764,742 - ECD_03579 0.77 +1.5
3,764,752 + ECD_03579 0.79 +0.1
3,764,752 + ECD_03579 0.79 +1.0
3,764,753 - ECD_03579 0.79 +0.7
3,764,766 - ECD_03579 0.81 +1.8
3,764,771 + ECD_03579 0.82 +0.6
3,764,771 + ECD_03579 0.82 -0.5
3,764,771 + ECD_03579 0.82 +1.7
3,764,772 - ECD_03579 0.82 +1.2
3,764,772 - ECD_03579 0.82 -1.9
3,764,772 - ECD_03579 0.82 -0.6
3,764,772 - ECD_03579 0.82 +0.2
3,764,774 + ECD_03579 0.82 +1.0
3,764,775 - ECD_03579 0.82 -2.3
3,764,775 - ECD_03579 0.82 -0.1
3,764,775 - ECD_03579 0.82 +0.8
3,764,814 + ECD_03579 0.88 +0.6
3,764,845 + -1.8
3,764,846 - -0.1
3,764,871 + +0.2
3,764,871 + -2.5
3,764,871 + +1.7
3,764,871 + +0.7
3,764,871 + +0.4
3,764,871 + +1.6
3,764,872 - +0.9
3,764,872 - -0.5
3,764,872 - +0.1
3,764,872 - -0.3
3,764,872 - +2.7
3,764,873 + +0.9
3,764,873 + +1.7
3,764,874 - -0.4
3,764,880 + +0.8
3,764,889 - -0.0
3,764,938 - +1.0
3,764,938 - +0.7
3,764,938 - +0.3
3,764,949 + -2.6
3,764,949 + +0.1
3,764,949 + +0.6
3,764,949 + -2.4
3,764,949 + +1.0
3,764,950 - +1.1
3,764,950 - -0.1
3,764,950 - -1.3

Or see this region's nucleotide sequence