Experiment: Bas49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03082 and ECD_03083 overlap by 4 nucleotides ECD_03083 and ECD_03084 are separated by 47 nucleotides ECD_03084 and ECD_03085 are separated by 108 nucleotides
ECD_03082: ECD_03082 - N-acetylmannosamine kinase, at 3,230,638 to 3,231,513
_03082
ECD_03083: ECD_03083 - putative N-acetylmannosamine-6-P epimerase, at 3,231,510 to 3,232,199
_03083
ECD_03084: ECD_03084 - sialic acid transporter, at 3,232,247 to 3,233,737
_03084
ECD_03085: ECD_03085 - N-acetylneuraminate lyase, at 3,233,846 to 3,234,739
_03085
Position (kb)
3232
3233
3234 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3231.263 kb on - strand, within ECD_03082 at 3231.370 kb on + strand, within ECD_03082 at 3231.370 kb on + strand, within ECD_03082 at 3231.492 kb on + strand at 3231.513 kb on + strand at 3231.514 kb on - strand at 3231.514 kb on - strand at 3231.514 kb on - strand at 3231.514 kb on - strand at 3231.541 kb on + strand at 3231.542 kb on - strand at 3231.640 kb on + strand, within ECD_03083 at 3231.641 kb on - strand, within ECD_03083 at 3231.728 kb on + strand, within ECD_03083 at 3231.729 kb on - strand, within ECD_03083 at 3231.729 kb on - strand, within ECD_03083 at 3231.729 kb on - strand, within ECD_03083 at 3231.743 kb on + strand, within ECD_03083 at 3231.752 kb on + strand, within ECD_03083 at 3231.820 kb on - strand, within ECD_03083 at 3231.836 kb on + strand, within ECD_03083 at 3231.837 kb on - strand, within ECD_03083 at 3231.938 kb on + strand, within ECD_03083 at 3231.938 kb on + strand, within ECD_03083 at 3231.940 kb on + strand, within ECD_03083 at 3231.940 kb on + strand, within ECD_03083 at 3231.941 kb on - strand, within ECD_03083 at 3232.192 kb on - strand at 3232.192 kb on - strand at 3232.199 kb on + strand at 3232.199 kb on + strand at 3232.199 kb on + strand at 3232.199 kb on + strand at 3232.199 kb on + strand at 3232.200 kb on - strand at 3232.200 kb on - strand at 3232.200 kb on - strand at 3232.200 kb on - strand at 3232.200 kb on - strand at 3232.200 kb on - strand at 3232.227 kb on - strand at 3232.231 kb on - strand at 3232.231 kb on - strand at 3232.231 kb on - strand at 3232.231 kb on - strand at 3232.231 kb on - strand at 3232.231 kb on - strand at 3232.231 kb on - strand at 3232.249 kb on - strand at 3232.266 kb on - strand at 3232.334 kb on - strand at 3232.334 kb on - strand at 3232.515 kb on + strand, within ECD_03084 at 3232.516 kb on - strand, within ECD_03084 at 3232.519 kb on + strand, within ECD_03084 at 3232.520 kb on - strand, within ECD_03084 at 3232.557 kb on + strand, within ECD_03084 at 3232.577 kb on + strand, within ECD_03084 at 3232.577 kb on + strand, within ECD_03084 at 3232.707 kb on + strand, within ECD_03084 at 3232.707 kb on + strand, within ECD_03084 at 3232.708 kb on - strand, within ECD_03084 at 3232.749 kb on - strand, within ECD_03084 at 3232.804 kb on + strand, within ECD_03084 at 3232.805 kb on - strand, within ECD_03084 at 3232.815 kb on + strand, within ECD_03084 at 3232.815 kb on + strand, within ECD_03084 at 3232.815 kb on + strand, within ECD_03084 at 3232.816 kb on - strand, within ECD_03084 at 3232.816 kb on - strand, within ECD_03084 at 3232.836 kb on + strand, within ECD_03084 at 3232.837 kb on - strand, within ECD_03084 at 3232.837 kb on - strand, within ECD_03084 at 3232.931 kb on - strand, within ECD_03084 at 3232.942 kb on + strand, within ECD_03084 at 3232.943 kb on - strand, within ECD_03084 at 3232.943 kb on - strand, within ECD_03084 at 3233.054 kb on + strand, within ECD_03084 at 3233.120 kb on - strand, within ECD_03084 at 3233.248 kb on - strand, within ECD_03084 at 3233.248 kb on - strand, within ECD_03084 at 3233.343 kb on + strand, within ECD_03084 at 3233.415 kb on + strand, within ECD_03084 at 3233.416 kb on - strand, within ECD_03084 at 3233.624 kb on + strand at 3233.728 kb on + strand at 3233.728 kb on + strand at 3233.728 kb on + strand at 3233.729 kb on - strand at 3233.729 kb on - strand at 3233.732 kb on - strand at 3233.805 kb on + strand at 3233.806 kb on - strand at 3233.806 kb on - strand at 3233.957 kb on - strand, within ECD_03085 at 3233.959 kb on - strand, within ECD_03085 at 3234.111 kb on + strand, within ECD_03085 at 3234.111 kb on + strand, within ECD_03085 at 3234.111 kb on + strand, within ECD_03085 at 3234.178 kb on + strand, within ECD_03085 at 3234.180 kb on + strand, within ECD_03085 at 3234.257 kb on + strand, within ECD_03085 at 3234.258 kb on - strand, within ECD_03085 at 3234.271 kb on + strand, within ECD_03085 at 3234.272 kb on - strand, within ECD_03085 at 3234.272 kb on - strand, within ECD_03085 at 3234.272 kb on - strand, within ECD_03085 at 3234.330 kb on + strand, within ECD_03085 at 3234.330 kb on + strand, within ECD_03085 at 3234.365 kb on - strand, within ECD_03085 at 3234.411 kb on + strand, within ECD_03085 at 3234.411 kb on + strand, within ECD_03085 at 3234.411 kb on + strand, within ECD_03085 at 3234.412 kb on - strand, within ECD_03085 at 3234.412 kb on - strand, within ECD_03085 at 3234.581 kb on + strand, within ECD_03085 at 3234.612 kb on + strand, within ECD_03085 at 3234.612 kb on + strand, within ECD_03085 at 3234.613 kb on - strand, within ECD_03085 at 3234.615 kb on - strand, within ECD_03085
Per-strain Table
Position Strand Gene LocusTag Fraction Bas49 remove 3,231,263 - ECD_03082 0.71 +1.1 3,231,370 + ECD_03082 0.84 -1.5 3,231,370 + ECD_03082 0.84 +0.1 3,231,492 + -1.4 3,231,513 + -1.3 3,231,514 - -0.1 3,231,514 - +2.0 3,231,514 - -1.7 3,231,514 - +1.7 3,231,541 + +0.1 3,231,542 - +1.1 3,231,640 + ECD_03083 0.19 -1.0 3,231,641 - ECD_03083 0.19 -0.8 3,231,728 + ECD_03083 0.32 +1.3 3,231,729 - ECD_03083 0.32 +0.7 3,231,729 - ECD_03083 0.32 +1.5 3,231,729 - ECD_03083 0.32 +0.1 3,231,743 + ECD_03083 0.34 +1.8 3,231,752 + ECD_03083 0.35 +0.7 3,231,820 - ECD_03083 0.45 +0.8 3,231,836 + ECD_03083 0.47 +3.4 3,231,837 - ECD_03083 0.47 +2.0 3,231,938 + ECD_03083 0.62 +0.7 3,231,938 + ECD_03083 0.62 +2.4 3,231,940 + ECD_03083 0.62 -1.0 3,231,940 + ECD_03083 0.62 +0.9 3,231,941 - ECD_03083 0.62 +1.3 3,232,192 - +0.7 3,232,192 - +0.5 3,232,199 + +1.1 3,232,199 + +1.9 3,232,199 + +1.5 3,232,199 + +0.8 3,232,199 + +0.8 3,232,200 - +0.4 3,232,200 - +0.4 3,232,200 - +1.3 3,232,200 - +1.5 3,232,200 - +0.9 3,232,200 - +1.0 3,232,227 - +0.8 3,232,231 - +2.1 3,232,231 - +1.2 3,232,231 - +0.4 3,232,231 - +1.0 3,232,231 - +1.5 3,232,231 - -0.3 3,232,231 - +1.3 3,232,249 - -0.5 3,232,266 - -0.1 3,232,334 - -0.5 3,232,334 - +0.6 3,232,515 + ECD_03084 0.18 -0.7 3,232,516 - ECD_03084 0.18 +0.3 3,232,519 + ECD_03084 0.18 +1.6 3,232,520 - ECD_03084 0.18 +1.5 3,232,557 + ECD_03084 0.21 +0.3 3,232,577 + ECD_03084 0.22 -1.0 3,232,577 + ECD_03084 0.22 -1.1 3,232,707 + ECD_03084 0.31 +0.0 3,232,707 + ECD_03084 0.31 +1.3 3,232,708 - ECD_03084 0.31 +2.7 3,232,749 - ECD_03084 0.34 +1.8 3,232,804 + ECD_03084 0.37 -0.3 3,232,805 - ECD_03084 0.37 +0.9 3,232,815 + ECD_03084 0.38 -1.7 3,232,815 + ECD_03084 0.38 +2.9 3,232,815 + ECD_03084 0.38 +1.9 3,232,816 - ECD_03084 0.38 +3.4 3,232,816 - ECD_03084 0.38 +0.3 3,232,836 + ECD_03084 0.40 +2.4 3,232,837 - ECD_03084 0.40 +2.5 3,232,837 - ECD_03084 0.40 +0.7 3,232,931 - ECD_03084 0.46 +1.1 3,232,942 + ECD_03084 0.47 +1.1 3,232,943 - ECD_03084 0.47 +0.6 3,232,943 - ECD_03084 0.47 +1.5 3,233,054 + ECD_03084 0.54 +0.7 3,233,120 - ECD_03084 0.59 +1.1 3,233,248 - ECD_03084 0.67 +1.1 3,233,248 - ECD_03084 0.67 +4.4 3,233,343 + ECD_03084 0.74 +2.3 3,233,415 + ECD_03084 0.78 +1.9 3,233,416 - ECD_03084 0.78 +0.6 3,233,624 + +0.5 3,233,728 + +0.9 3,233,728 + -0.7 3,233,728 + +1.3 3,233,729 - +0.7 3,233,729 - +1.6 3,233,732 - +0.1 3,233,805 + +1.4 3,233,806 - +0.9 3,233,806 - +0.9 3,233,957 - ECD_03085 0.12 +2.0 3,233,959 - ECD_03085 0.13 -0.8 3,234,111 + ECD_03085 0.30 +0.5 3,234,111 + ECD_03085 0.30 +1.6 3,234,111 + ECD_03085 0.30 +0.9 3,234,178 + ECD_03085 0.37 +1.3 3,234,180 + ECD_03085 0.37 +1.2 3,234,257 + ECD_03085 0.46 +2.5 3,234,258 - ECD_03085 0.46 -0.9 3,234,271 + ECD_03085 0.48 -0.7 3,234,272 - ECD_03085 0.48 +0.7 3,234,272 - ECD_03085 0.48 +0.6 3,234,272 - ECD_03085 0.48 +0.3 3,234,330 + ECD_03085 0.54 +2.6 3,234,330 + ECD_03085 0.54 +0.3 3,234,365 - ECD_03085 0.58 +2.9 3,234,411 + ECD_03085 0.63 +4.1 3,234,411 + ECD_03085 0.63 +1.6 3,234,411 + ECD_03085 0.63 +1.8 3,234,412 - ECD_03085 0.63 -1.2 3,234,412 - ECD_03085 0.63 +0.0 3,234,581 + ECD_03085 0.82 -0.3 3,234,612 + ECD_03085 0.86 -2.3 3,234,612 + ECD_03085 0.86 +1.0 3,234,613 - ECD_03085 0.86 +3.2 3,234,615 - ECD_03085 0.86 +0.6
Or see this region's nucleotide sequence