Strain Fitness in Escherichia coli BL21 around ECD_03084

Experiment: Bas49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03082 and ECD_03083 overlap by 4 nucleotidesECD_03083 and ECD_03084 are separated by 47 nucleotidesECD_03084 and ECD_03085 are separated by 108 nucleotides ECD_03082: ECD_03082 - N-acetylmannosamine kinase, at 3,230,638 to 3,231,513 _03082 ECD_03083: ECD_03083 - putative N-acetylmannosamine-6-P epimerase, at 3,231,510 to 3,232,199 _03083 ECD_03084: ECD_03084 - sialic acid transporter, at 3,232,247 to 3,233,737 _03084 ECD_03085: ECD_03085 - N-acetylneuraminate lyase, at 3,233,846 to 3,234,739 _03085 Position (kb) 3232 3233 3234Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3231.263 kb on - strand, within ECD_03082at 3231.370 kb on + strand, within ECD_03082at 3231.370 kb on + strand, within ECD_03082at 3231.492 kb on + strandat 3231.513 kb on + strandat 3231.514 kb on - strandat 3231.514 kb on - strandat 3231.514 kb on - strandat 3231.514 kb on - strandat 3231.541 kb on + strandat 3231.542 kb on - strandat 3231.640 kb on + strand, within ECD_03083at 3231.641 kb on - strand, within ECD_03083at 3231.728 kb on + strand, within ECD_03083at 3231.729 kb on - strand, within ECD_03083at 3231.729 kb on - strand, within ECD_03083at 3231.729 kb on - strand, within ECD_03083at 3231.743 kb on + strand, within ECD_03083at 3231.752 kb on + strand, within ECD_03083at 3231.820 kb on - strand, within ECD_03083at 3231.836 kb on + strand, within ECD_03083at 3231.837 kb on - strand, within ECD_03083at 3231.938 kb on + strand, within ECD_03083at 3231.938 kb on + strand, within ECD_03083at 3231.940 kb on + strand, within ECD_03083at 3231.940 kb on + strand, within ECD_03083at 3231.941 kb on - strand, within ECD_03083at 3232.192 kb on - strandat 3232.192 kb on - strandat 3232.199 kb on + strandat 3232.199 kb on + strandat 3232.199 kb on + strandat 3232.199 kb on + strandat 3232.199 kb on + strandat 3232.200 kb on - strandat 3232.200 kb on - strandat 3232.200 kb on - strandat 3232.200 kb on - strandat 3232.200 kb on - strandat 3232.200 kb on - strandat 3232.227 kb on - strandat 3232.231 kb on - strandat 3232.231 kb on - strandat 3232.231 kb on - strandat 3232.231 kb on - strandat 3232.231 kb on - strandat 3232.231 kb on - strandat 3232.231 kb on - strandat 3232.249 kb on - strandat 3232.266 kb on - strandat 3232.334 kb on - strandat 3232.334 kb on - strandat 3232.515 kb on + strand, within ECD_03084at 3232.516 kb on - strand, within ECD_03084at 3232.519 kb on + strand, within ECD_03084at 3232.520 kb on - strand, within ECD_03084at 3232.557 kb on + strand, within ECD_03084at 3232.577 kb on + strand, within ECD_03084at 3232.577 kb on + strand, within ECD_03084at 3232.707 kb on + strand, within ECD_03084at 3232.707 kb on + strand, within ECD_03084at 3232.708 kb on - strand, within ECD_03084at 3232.749 kb on - strand, within ECD_03084at 3232.804 kb on + strand, within ECD_03084at 3232.805 kb on - strand, within ECD_03084at 3232.815 kb on + strand, within ECD_03084at 3232.815 kb on + strand, within ECD_03084at 3232.815 kb on + strand, within ECD_03084at 3232.816 kb on - strand, within ECD_03084at 3232.816 kb on - strand, within ECD_03084at 3232.836 kb on + strand, within ECD_03084at 3232.837 kb on - strand, within ECD_03084at 3232.837 kb on - strand, within ECD_03084at 3232.931 kb on - strand, within ECD_03084at 3232.942 kb on + strand, within ECD_03084at 3232.943 kb on - strand, within ECD_03084at 3232.943 kb on - strand, within ECD_03084at 3233.054 kb on + strand, within ECD_03084at 3233.120 kb on - strand, within ECD_03084at 3233.248 kb on - strand, within ECD_03084at 3233.248 kb on - strand, within ECD_03084at 3233.343 kb on + strand, within ECD_03084at 3233.415 kb on + strand, within ECD_03084at 3233.416 kb on - strand, within ECD_03084at 3233.624 kb on + strandat 3233.728 kb on + strandat 3233.728 kb on + strandat 3233.728 kb on + strandat 3233.729 kb on - strandat 3233.729 kb on - strandat 3233.732 kb on - strandat 3233.805 kb on + strandat 3233.806 kb on - strandat 3233.806 kb on - strandat 3233.957 kb on - strand, within ECD_03085at 3233.959 kb on - strand, within ECD_03085at 3234.111 kb on + strand, within ECD_03085at 3234.111 kb on + strand, within ECD_03085at 3234.111 kb on + strand, within ECD_03085at 3234.178 kb on + strand, within ECD_03085at 3234.180 kb on + strand, within ECD_03085at 3234.257 kb on + strand, within ECD_03085at 3234.258 kb on - strand, within ECD_03085at 3234.271 kb on + strand, within ECD_03085at 3234.272 kb on - strand, within ECD_03085at 3234.272 kb on - strand, within ECD_03085at 3234.272 kb on - strand, within ECD_03085at 3234.330 kb on + strand, within ECD_03085at 3234.330 kb on + strand, within ECD_03085at 3234.365 kb on - strand, within ECD_03085at 3234.411 kb on + strand, within ECD_03085at 3234.411 kb on + strand, within ECD_03085at 3234.411 kb on + strand, within ECD_03085at 3234.412 kb on - strand, within ECD_03085at 3234.412 kb on - strand, within ECD_03085at 3234.581 kb on + strand, within ECD_03085at 3234.612 kb on + strand, within ECD_03085at 3234.612 kb on + strand, within ECD_03085at 3234.613 kb on - strand, within ECD_03085at 3234.615 kb on - strand, within ECD_03085

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas49
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3,231,263 - ECD_03082 0.71 +1.1
3,231,370 + ECD_03082 0.84 -1.5
3,231,370 + ECD_03082 0.84 +0.1
3,231,492 + -1.4
3,231,513 + -1.3
3,231,514 - -0.1
3,231,514 - +2.0
3,231,514 - -1.7
3,231,514 - +1.7
3,231,541 + +0.1
3,231,542 - +1.1
3,231,640 + ECD_03083 0.19 -1.0
3,231,641 - ECD_03083 0.19 -0.8
3,231,728 + ECD_03083 0.32 +1.3
3,231,729 - ECD_03083 0.32 +0.7
3,231,729 - ECD_03083 0.32 +1.5
3,231,729 - ECD_03083 0.32 +0.1
3,231,743 + ECD_03083 0.34 +1.8
3,231,752 + ECD_03083 0.35 +0.7
3,231,820 - ECD_03083 0.45 +0.8
3,231,836 + ECD_03083 0.47 +3.4
3,231,837 - ECD_03083 0.47 +2.0
3,231,938 + ECD_03083 0.62 +0.7
3,231,938 + ECD_03083 0.62 +2.4
3,231,940 + ECD_03083 0.62 -1.0
3,231,940 + ECD_03083 0.62 +0.9
3,231,941 - ECD_03083 0.62 +1.3
3,232,192 - +0.7
3,232,192 - +0.5
3,232,199 + +1.1
3,232,199 + +1.9
3,232,199 + +1.5
3,232,199 + +0.8
3,232,199 + +0.8
3,232,200 - +0.4
3,232,200 - +0.4
3,232,200 - +1.3
3,232,200 - +1.5
3,232,200 - +0.9
3,232,200 - +1.0
3,232,227 - +0.8
3,232,231 - +2.1
3,232,231 - +1.2
3,232,231 - +0.4
3,232,231 - +1.0
3,232,231 - +1.5
3,232,231 - -0.3
3,232,231 - +1.3
3,232,249 - -0.5
3,232,266 - -0.1
3,232,334 - -0.5
3,232,334 - +0.6
3,232,515 + ECD_03084 0.18 -0.7
3,232,516 - ECD_03084 0.18 +0.3
3,232,519 + ECD_03084 0.18 +1.6
3,232,520 - ECD_03084 0.18 +1.5
3,232,557 + ECD_03084 0.21 +0.3
3,232,577 + ECD_03084 0.22 -1.0
3,232,577 + ECD_03084 0.22 -1.1
3,232,707 + ECD_03084 0.31 +0.0
3,232,707 + ECD_03084 0.31 +1.3
3,232,708 - ECD_03084 0.31 +2.7
3,232,749 - ECD_03084 0.34 +1.8
3,232,804 + ECD_03084 0.37 -0.3
3,232,805 - ECD_03084 0.37 +0.9
3,232,815 + ECD_03084 0.38 -1.7
3,232,815 + ECD_03084 0.38 +2.9
3,232,815 + ECD_03084 0.38 +1.9
3,232,816 - ECD_03084 0.38 +3.4
3,232,816 - ECD_03084 0.38 +0.3
3,232,836 + ECD_03084 0.40 +2.4
3,232,837 - ECD_03084 0.40 +2.5
3,232,837 - ECD_03084 0.40 +0.7
3,232,931 - ECD_03084 0.46 +1.1
3,232,942 + ECD_03084 0.47 +1.1
3,232,943 - ECD_03084 0.47 +0.6
3,232,943 - ECD_03084 0.47 +1.5
3,233,054 + ECD_03084 0.54 +0.7
3,233,120 - ECD_03084 0.59 +1.1
3,233,248 - ECD_03084 0.67 +1.1
3,233,248 - ECD_03084 0.67 +4.4
3,233,343 + ECD_03084 0.74 +2.3
3,233,415 + ECD_03084 0.78 +1.9
3,233,416 - ECD_03084 0.78 +0.6
3,233,624 + +0.5
3,233,728 + +0.9
3,233,728 + -0.7
3,233,728 + +1.3
3,233,729 - +0.7
3,233,729 - +1.6
3,233,732 - +0.1
3,233,805 + +1.4
3,233,806 - +0.9
3,233,806 - +0.9
3,233,957 - ECD_03085 0.12 +2.0
3,233,959 - ECD_03085 0.13 -0.8
3,234,111 + ECD_03085 0.30 +0.5
3,234,111 + ECD_03085 0.30 +1.6
3,234,111 + ECD_03085 0.30 +0.9
3,234,178 + ECD_03085 0.37 +1.3
3,234,180 + ECD_03085 0.37 +1.2
3,234,257 + ECD_03085 0.46 +2.5
3,234,258 - ECD_03085 0.46 -0.9
3,234,271 + ECD_03085 0.48 -0.7
3,234,272 - ECD_03085 0.48 +0.7
3,234,272 - ECD_03085 0.48 +0.6
3,234,272 - ECD_03085 0.48 +0.3
3,234,330 + ECD_03085 0.54 +2.6
3,234,330 + ECD_03085 0.54 +0.3
3,234,365 - ECD_03085 0.58 +2.9
3,234,411 + ECD_03085 0.63 +4.1
3,234,411 + ECD_03085 0.63 +1.6
3,234,411 + ECD_03085 0.63 +1.8
3,234,412 - ECD_03085 0.63 -1.2
3,234,412 - ECD_03085 0.63 +0.0
3,234,581 + ECD_03085 0.82 -0.3
3,234,612 + ECD_03085 0.86 -2.3
3,234,612 + ECD_03085 0.86 +1.0
3,234,613 - ECD_03085 0.86 +3.2
3,234,615 - ECD_03085 0.86 +0.6

Or see this region's nucleotide sequence