Experiment: Bas49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03081 and ECD_03082 overlap by 4 nucleotides ECD_03082 and ECD_03083 overlap by 4 nucleotides ECD_03083 and ECD_03084 are separated by 47 nucleotides
ECD_03081: ECD_03081 - DUF386 family protein, cupin superfamily, at 3,230,177 to 3,230,641
_03081
ECD_03082: ECD_03082 - N-acetylmannosamine kinase, at 3,230,638 to 3,231,513
_03082
ECD_03083: ECD_03083 - putative N-acetylmannosamine-6-P epimerase, at 3,231,510 to 3,232,199
_03083
ECD_03084: ECD_03084 - sialic acid transporter, at 3,232,247 to 3,233,737
_03084
Position (kb)
3231
3232
3233 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3230.564 kb on + strand, within ECD_03081 at 3230.564 kb on + strand, within ECD_03081 at 3230.565 kb on - strand, within ECD_03081 at 3230.601 kb on - strand at 3230.601 kb on - strand at 3230.624 kb on + strand at 3230.624 kb on + strand at 3230.625 kb on - strand at 3230.625 kb on - strand at 3230.625 kb on - strand at 3230.678 kb on - strand at 3230.678 kb on - strand at 3230.711 kb on - strand at 3230.748 kb on - strand, within ECD_03082 at 3230.748 kb on - strand, within ECD_03082 at 3230.829 kb on + strand, within ECD_03082 at 3230.830 kb on - strand, within ECD_03082 at 3230.856 kb on + strand, within ECD_03082 at 3230.857 kb on - strand, within ECD_03082 at 3230.857 kb on - strand, within ECD_03082 at 3230.857 kb on - strand, within ECD_03082 at 3231.045 kb on + strand, within ECD_03082 at 3231.152 kb on - strand, within ECD_03082 at 3231.152 kb on - strand, within ECD_03082 at 3231.154 kb on - strand, within ECD_03082 at 3231.229 kb on - strand, within ECD_03082 at 3231.263 kb on - strand, within ECD_03082 at 3231.370 kb on + strand, within ECD_03082 at 3231.370 kb on + strand, within ECD_03082 at 3231.492 kb on + strand at 3231.513 kb on + strand at 3231.514 kb on - strand at 3231.514 kb on - strand at 3231.514 kb on - strand at 3231.514 kb on - strand at 3231.541 kb on + strand at 3231.542 kb on - strand at 3231.640 kb on + strand, within ECD_03083 at 3231.641 kb on - strand, within ECD_03083 at 3231.728 kb on + strand, within ECD_03083 at 3231.729 kb on - strand, within ECD_03083 at 3231.729 kb on - strand, within ECD_03083 at 3231.729 kb on - strand, within ECD_03083 at 3231.743 kb on + strand, within ECD_03083 at 3231.752 kb on + strand, within ECD_03083 at 3231.820 kb on - strand, within ECD_03083 at 3231.836 kb on + strand, within ECD_03083 at 3231.837 kb on - strand, within ECD_03083 at 3231.938 kb on + strand, within ECD_03083 at 3231.938 kb on + strand, within ECD_03083 at 3231.940 kb on + strand, within ECD_03083 at 3231.940 kb on + strand, within ECD_03083 at 3231.941 kb on - strand, within ECD_03083 at 3232.192 kb on - strand at 3232.192 kb on - strand at 3232.199 kb on + strand at 3232.199 kb on + strand at 3232.199 kb on + strand at 3232.199 kb on + strand at 3232.199 kb on + strand at 3232.200 kb on - strand at 3232.200 kb on - strand at 3232.200 kb on - strand at 3232.200 kb on - strand at 3232.200 kb on - strand at 3232.200 kb on - strand at 3232.227 kb on - strand at 3232.231 kb on - strand at 3232.231 kb on - strand at 3232.231 kb on - strand at 3232.231 kb on - strand at 3232.231 kb on - strand at 3232.231 kb on - strand at 3232.231 kb on - strand at 3232.249 kb on - strand at 3232.266 kb on - strand at 3232.334 kb on - strand at 3232.334 kb on - strand at 3232.515 kb on + strand, within ECD_03084 at 3232.516 kb on - strand, within ECD_03084 at 3232.519 kb on + strand, within ECD_03084 at 3232.520 kb on - strand, within ECD_03084 at 3232.557 kb on + strand, within ECD_03084 at 3232.577 kb on + strand, within ECD_03084 at 3232.577 kb on + strand, within ECD_03084 at 3232.707 kb on + strand, within ECD_03084 at 3232.707 kb on + strand, within ECD_03084 at 3232.708 kb on - strand, within ECD_03084 at 3232.749 kb on - strand, within ECD_03084 at 3232.804 kb on + strand, within ECD_03084 at 3232.805 kb on - strand, within ECD_03084 at 3232.815 kb on + strand, within ECD_03084 at 3232.815 kb on + strand, within ECD_03084 at 3232.815 kb on + strand, within ECD_03084 at 3232.816 kb on - strand, within ECD_03084 at 3232.816 kb on - strand, within ECD_03084 at 3232.836 kb on + strand, within ECD_03084 at 3232.837 kb on - strand, within ECD_03084 at 3232.837 kb on - strand, within ECD_03084 at 3232.931 kb on - strand, within ECD_03084 at 3232.942 kb on + strand, within ECD_03084 at 3232.943 kb on - strand, within ECD_03084 at 3232.943 kb on - strand, within ECD_03084 at 3233.054 kb on + strand, within ECD_03084 at 3233.120 kb on - strand, within ECD_03084
Per-strain Table
Position Strand Gene LocusTag Fraction Bas49 remove 3,230,564 + ECD_03081 0.83 +0.6 3,230,564 + ECD_03081 0.83 +1.1 3,230,565 - ECD_03081 0.83 +0.0 3,230,601 - +2.3 3,230,601 - +1.5 3,230,624 + -0.1 3,230,624 + +2.2 3,230,625 - +0.9 3,230,625 - +2.5 3,230,625 - +1.3 3,230,678 - -0.2 3,230,678 - -0.6 3,230,711 - +0.9 3,230,748 - ECD_03082 0.13 +1.6 3,230,748 - ECD_03082 0.13 +1.3 3,230,829 + ECD_03082 0.22 -1.0 3,230,830 - ECD_03082 0.22 +0.7 3,230,856 + ECD_03082 0.25 +1.0 3,230,857 - ECD_03082 0.25 +0.2 3,230,857 - ECD_03082 0.25 +1.3 3,230,857 - ECD_03082 0.25 -1.3 3,231,045 + ECD_03082 0.46 -0.4 3,231,152 - ECD_03082 0.59 +0.5 3,231,152 - ECD_03082 0.59 -1.6 3,231,154 - ECD_03082 0.59 -0.3 3,231,229 - ECD_03082 0.67 +1.9 3,231,263 - ECD_03082 0.71 +1.1 3,231,370 + ECD_03082 0.84 -1.5 3,231,370 + ECD_03082 0.84 +0.1 3,231,492 + -1.4 3,231,513 + -1.3 3,231,514 - -0.1 3,231,514 - +2.0 3,231,514 - -1.7 3,231,514 - +1.7 3,231,541 + +0.1 3,231,542 - +1.1 3,231,640 + ECD_03083 0.19 -1.0 3,231,641 - ECD_03083 0.19 -0.8 3,231,728 + ECD_03083 0.32 +1.3 3,231,729 - ECD_03083 0.32 +0.7 3,231,729 - ECD_03083 0.32 +1.5 3,231,729 - ECD_03083 0.32 +0.1 3,231,743 + ECD_03083 0.34 +1.8 3,231,752 + ECD_03083 0.35 +0.7 3,231,820 - ECD_03083 0.45 +0.8 3,231,836 + ECD_03083 0.47 +3.4 3,231,837 - ECD_03083 0.47 +2.0 3,231,938 + ECD_03083 0.62 +0.7 3,231,938 + ECD_03083 0.62 +2.4 3,231,940 + ECD_03083 0.62 -1.0 3,231,940 + ECD_03083 0.62 +0.9 3,231,941 - ECD_03083 0.62 +1.3 3,232,192 - +0.7 3,232,192 - +0.5 3,232,199 + +1.1 3,232,199 + +1.9 3,232,199 + +1.5 3,232,199 + +0.8 3,232,199 + +0.8 3,232,200 - +0.4 3,232,200 - +0.4 3,232,200 - +1.3 3,232,200 - +1.5 3,232,200 - +0.9 3,232,200 - +1.0 3,232,227 - +0.8 3,232,231 - +2.1 3,232,231 - +1.2 3,232,231 - +0.4 3,232,231 - +1.0 3,232,231 - +1.5 3,232,231 - -0.3 3,232,231 - +1.3 3,232,249 - -0.5 3,232,266 - -0.1 3,232,334 - -0.5 3,232,334 - +0.6 3,232,515 + ECD_03084 0.18 -0.7 3,232,516 - ECD_03084 0.18 +0.3 3,232,519 + ECD_03084 0.18 +1.6 3,232,520 - ECD_03084 0.18 +1.5 3,232,557 + ECD_03084 0.21 +0.3 3,232,577 + ECD_03084 0.22 -1.0 3,232,577 + ECD_03084 0.22 -1.1 3,232,707 + ECD_03084 0.31 +0.0 3,232,707 + ECD_03084 0.31 +1.3 3,232,708 - ECD_03084 0.31 +2.7 3,232,749 - ECD_03084 0.34 +1.8 3,232,804 + ECD_03084 0.37 -0.3 3,232,805 - ECD_03084 0.37 +0.9 3,232,815 + ECD_03084 0.38 -1.7 3,232,815 + ECD_03084 0.38 +2.9 3,232,815 + ECD_03084 0.38 +1.9 3,232,816 - ECD_03084 0.38 +3.4 3,232,816 - ECD_03084 0.38 +0.3 3,232,836 + ECD_03084 0.40 +2.4 3,232,837 - ECD_03084 0.40 +2.5 3,232,837 - ECD_03084 0.40 +0.7 3,232,931 - ECD_03084 0.46 +1.1 3,232,942 + ECD_03084 0.47 +1.1 3,232,943 - ECD_03084 0.47 +0.6 3,232,943 - ECD_03084 0.47 +1.5 3,233,054 + ECD_03084 0.54 +0.7 3,233,120 - ECD_03084 0.59 +1.1
Or see this region's nucleotide sequence