Strain Fitness in Escherichia coli BL21 around ECD_02797

Experiment: Bas49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02796 and ECD_t00055 are separated by 105 nucleotidesECD_t00055 and ECD_02797 are separated by 272 nucleotidesECD_02797 and ECD_02798 are separated by 79 nucleotides ECD_02796: ECD_02796 - DUF554 family putative inner membrane protein, at 2,940,315 to 2,941,022 _02796 ECD_t00055: ECD_t00055 - tRNA-Phe, at 2,941,128 to 2,941,203 _t00055 ECD_02797: ECD_02797 - integrase, at 2,941,476 to 2,942,360 _02797 ECD_02798: ECD_02798 - hypothetical protein, at 2,942,440 to 2,943,342 _02798 Position (kb) 2941 2942 2943Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2940.497 kb on - strand, within ECD_02796at 2940.596 kb on + strand, within ECD_02796at 2940.596 kb on + strand, within ECD_02796at 2940.596 kb on + strand, within ECD_02796at 2940.597 kb on - strand, within ECD_02796at 2940.597 kb on - strand, within ECD_02796at 2940.597 kb on - strand, within ECD_02796at 2940.620 kb on + strand, within ECD_02796at 2940.630 kb on + strand, within ECD_02796at 2940.630 kb on + strand, within ECD_02796at 2940.630 kb on + strand, within ECD_02796at 2940.631 kb on - strand, within ECD_02796at 2940.641 kb on + strand, within ECD_02796at 2940.642 kb on - strand, within ECD_02796at 2940.714 kb on - strand, within ECD_02796at 2940.805 kb on + strand, within ECD_02796at 2940.847 kb on + strand, within ECD_02796at 2940.850 kb on + strand, within ECD_02796at 2940.922 kb on + strand, within ECD_02796at 2940.938 kb on + strand, within ECD_02796at 2941.052 kb on + strandat 2941.052 kb on + strandat 2941.053 kb on - strandat 2941.071 kb on + strandat 2941.288 kb on - strandat 2941.335 kb on + strandat 2941.345 kb on + strandat 2941.347 kb on + strandat 2941.348 kb on - strandat 2941.401 kb on - strandat 2941.453 kb on - strandat 2941.490 kb on - strandat 2941.490 kb on - strandat 2941.500 kb on - strandat 2941.530 kb on - strandat 2941.566 kb on + strand, within ECD_02797at 2941.700 kb on + strand, within ECD_02797at 2941.700 kb on + strand, within ECD_02797at 2941.701 kb on - strand, within ECD_02797at 2941.912 kb on + strand, within ECD_02797at 2941.913 kb on - strand, within ECD_02797at 2941.920 kb on + strand, within ECD_02797at 2941.927 kb on + strand, within ECD_02797at 2941.928 kb on - strand, within ECD_02797at 2941.947 kb on + strand, within ECD_02797at 2941.948 kb on - strand, within ECD_02797at 2941.948 kb on - strand, within ECD_02797at 2941.948 kb on - strand, within ECD_02797at 2942.055 kb on + strand, within ECD_02797at 2942.056 kb on - strand, within ECD_02797at 2942.056 kb on - strand, within ECD_02797at 2942.058 kb on - strand, within ECD_02797at 2942.058 kb on - strand, within ECD_02797at 2942.058 kb on - strand, within ECD_02797at 2942.088 kb on - strand, within ECD_02797at 2942.174 kb on + strand, within ECD_02797at 2942.349 kb on - strandat 2942.523 kb on + strandat 2942.550 kb on + strand, within ECD_02798at 2942.550 kb on + strand, within ECD_02798at 2942.557 kb on + strand, within ECD_02798at 2942.557 kb on + strand, within ECD_02798at 2942.557 kb on + strand, within ECD_02798at 2942.558 kb on - strand, within ECD_02798at 2942.705 kb on + strand, within ECD_02798at 2943.201 kb on + strand, within ECD_02798at 2943.318 kb on + strandat 2943.352 kb on + strandat 2943.352 kb on + strandat 2943.352 kb on + strandat 2943.352 kb on + strandat 2943.353 kb on - strandat 2943.354 kb on + strandat 2943.354 kb on + strandat 2943.354 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas49
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2,940,497 - ECD_02796 0.26 +0.6
2,940,596 + ECD_02796 0.40 -2.8
2,940,596 + ECD_02796 0.40 -0.9
2,940,596 + ECD_02796 0.40 -0.7
2,940,597 - ECD_02796 0.40 -2.0
2,940,597 - ECD_02796 0.40 +0.7
2,940,597 - ECD_02796 0.40 +3.0
2,940,620 + ECD_02796 0.43 -2.8
2,940,630 + ECD_02796 0.44 -1.9
2,940,630 + ECD_02796 0.44 +3.1
2,940,630 + ECD_02796 0.44 +0.3
2,940,631 - ECD_02796 0.45 -1.6
2,940,641 + ECD_02796 0.46 +2.1
2,940,642 - ECD_02796 0.46 +1.1
2,940,714 - ECD_02796 0.56 -1.9
2,940,805 + ECD_02796 0.69 -0.9
2,940,847 + ECD_02796 0.75 +1.7
2,940,850 + ECD_02796 0.76 -2.6
2,940,922 + ECD_02796 0.86 +0.5
2,940,938 + ECD_02796 0.88 -1.4
2,941,052 + -3.0
2,941,052 + +1.0
2,941,053 - +2.3
2,941,071 + +0.1
2,941,288 - -1.5
2,941,335 + -0.3
2,941,345 + -1.0
2,941,347 + -2.0
2,941,348 - -1.4
2,941,401 - -2.7
2,941,453 - +0.7
2,941,490 - +2.4
2,941,490 - -1.6
2,941,500 - +1.4
2,941,530 - +0.1
2,941,566 + ECD_02797 0.10 +2.1
2,941,700 + ECD_02797 0.25 -1.3
2,941,700 + ECD_02797 0.25 -0.8
2,941,701 - ECD_02797 0.25 +0.3
2,941,912 + ECD_02797 0.49 +0.4
2,941,913 - ECD_02797 0.49 -1.4
2,941,920 + ECD_02797 0.50 -3.0
2,941,927 + ECD_02797 0.51 -2.2
2,941,928 - ECD_02797 0.51 -0.1
2,941,947 + ECD_02797 0.53 +1.0
2,941,948 - ECD_02797 0.53 -0.6
2,941,948 - ECD_02797 0.53 -4.0
2,941,948 - ECD_02797 0.53 -1.0
2,942,055 + ECD_02797 0.65 +0.4
2,942,056 - ECD_02797 0.66 -1.2
2,942,056 - ECD_02797 0.66 -2.2
2,942,058 - ECD_02797 0.66 +0.1
2,942,058 - ECD_02797 0.66 +0.0
2,942,058 - ECD_02797 0.66 -2.5
2,942,088 - ECD_02797 0.69 -0.3
2,942,174 + ECD_02797 0.79 -2.6
2,942,349 - -0.6
2,942,523 + -2.0
2,942,550 + ECD_02798 0.12 -2.0
2,942,550 + ECD_02798 0.12 -0.2
2,942,557 + ECD_02798 0.13 -1.6
2,942,557 + ECD_02798 0.13 +0.4
2,942,557 + ECD_02798 0.13 -3.0
2,942,558 - ECD_02798 0.13 +1.2
2,942,705 + ECD_02798 0.29 -1.5
2,943,201 + ECD_02798 0.84 +0.4
2,943,318 + -1.7
2,943,352 + -0.8
2,943,352 + -1.3
2,943,352 + -0.4
2,943,352 + -2.0
2,943,353 - +0.3
2,943,354 + +0.4
2,943,354 + +1.4
2,943,354 + -1.9

Or see this region's nucleotide sequence