Experiment: Bas49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02515 and ECD_02516 are separated by 18 nucleotides ECD_02516 and ECD_02517 are separated by 22 nucleotides
ECD_02515: ECD_02515 - carbon starvation protein, at 2,628,773 to 2,629,750
_02515
ECD_02516: ECD_02516 - L-2-hydroxyglutarate oxidase, at 2,629,769 to 2,631,037
_02516
ECD_02517: ECD_02517 - succinate-semialdehyde dehydrogenase I, NADP-dependent, at 2,631,060 to 2,632,508
_02517
Position (kb)
2629
2630
2631
2632 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2628.793 kb on - strand at 2628.799 kb on + strand at 2628.825 kb on - strand at 2628.825 kb on - strand at 2629.217 kb on + strand, within ECD_02515 at 2629.217 kb on + strand, within ECD_02515 at 2629.218 kb on - strand, within ECD_02515 at 2629.248 kb on + strand, within ECD_02515 at 2629.248 kb on + strand, within ECD_02515 at 2629.265 kb on + strand, within ECD_02515 at 2629.265 kb on + strand, within ECD_02515 at 2629.265 kb on + strand, within ECD_02515 at 2629.265 kb on + strand, within ECD_02515 at 2629.265 kb on + strand, within ECD_02515 at 2629.265 kb on + strand, within ECD_02515 at 2629.266 kb on - strand, within ECD_02515 at 2629.266 kb on - strand, within ECD_02515 at 2629.266 kb on - strand, within ECD_02515 at 2629.266 kb on - strand, within ECD_02515 at 2629.286 kb on + strand, within ECD_02515 at 2629.286 kb on + strand, within ECD_02515 at 2629.286 kb on + strand, within ECD_02515 at 2629.287 kb on - strand, within ECD_02515 at 2629.376 kb on + strand, within ECD_02515 at 2629.376 kb on + strand, within ECD_02515 at 2629.376 kb on + strand, within ECD_02515 at 2629.376 kb on + strand, within ECD_02515 at 2629.376 kb on + strand, within ECD_02515 at 2629.499 kb on + strand, within ECD_02515 at 2629.499 kb on + strand, within ECD_02515 at 2629.500 kb on - strand, within ECD_02515 at 2629.500 kb on - strand, within ECD_02515 at 2629.500 kb on - strand, within ECD_02515 at 2629.664 kb on - strand at 2629.748 kb on + strand at 2629.749 kb on - strand at 2629.773 kb on - strand at 2629.931 kb on + strand, within ECD_02516 at 2629.931 kb on + strand, within ECD_02516 at 2629.932 kb on - strand, within ECD_02516 at 2629.932 kb on - strand, within ECD_02516 at 2629.932 kb on - strand, within ECD_02516 at 2629.932 kb on - strand, within ECD_02516 at 2629.932 kb on - strand, within ECD_02516 at 2629.934 kb on + strand, within ECD_02516 at 2629.935 kb on - strand, within ECD_02516 at 2629.935 kb on - strand, within ECD_02516 at 2629.935 kb on - strand, within ECD_02516 at 2630.263 kb on + strand, within ECD_02516 at 2630.264 kb on - strand, within ECD_02516 at 2630.267 kb on + strand, within ECD_02516 at 2630.267 kb on + strand, within ECD_02516 at 2630.299 kb on + strand, within ECD_02516 at 2630.299 kb on + strand, within ECD_02516 at 2630.316 kb on + strand, within ECD_02516 at 2630.316 kb on + strand, within ECD_02516 at 2630.316 kb on + strand, within ECD_02516 at 2630.320 kb on + strand, within ECD_02516 at 2630.359 kb on + strand, within ECD_02516 at 2630.359 kb on + strand, within ECD_02516 at 2630.444 kb on + strand, within ECD_02516 at 2630.445 kb on - strand, within ECD_02516 at 2630.492 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.686 kb on - strand, within ECD_02516 at 2630.686 kb on - strand, within ECD_02516 at 2630.686 kb on - strand, within ECD_02516 at 2630.686 kb on - strand, within ECD_02516 at 2630.732 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.754 kb on - strand, within ECD_02516 at 2630.930 kb on + strand at 2630.930 kb on + strand at 2630.930 kb on + strand at 2630.930 kb on + strand at 2630.930 kb on + strand at 2630.930 kb on + strand at 2630.930 kb on + strand at 2630.931 kb on - strand at 2630.931 kb on - strand at 2630.931 kb on - strand at 2630.931 kb on - strand at 2630.931 kb on - strand at 2630.932 kb on + strand at 2630.932 kb on + strand at 2630.932 kb on + strand at 2630.932 kb on + strand at 2630.933 kb on - strand at 2630.946 kb on + strand at 2630.946 kb on + strand at 2630.946 kb on + strand at 2630.947 kb on - strand at 2630.971 kb on + strand at 2630.971 kb on + strand at 2630.971 kb on + strand at 2630.972 kb on - strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.016 kb on - strand at 2631.029 kb on - strand at 2631.029 kb on - strand at 2631.056 kb on - strand at 2631.077 kb on + strand at 2631.077 kb on + strand at 2631.082 kb on + strand at 2631.083 kb on - strand at 2631.347 kb on - strand, within ECD_02517 at 2631.391 kb on - strand, within ECD_02517 at 2631.404 kb on + strand, within ECD_02517 at 2631.438 kb on + strand, within ECD_02517 at 2631.438 kb on + strand, within ECD_02517 at 2631.438 kb on + strand, within ECD_02517 at 2631.439 kb on - strand, within ECD_02517 at 2631.673 kb on + strand, within ECD_02517 at 2631.673 kb on + strand, within ECD_02517 at 2631.677 kb on + strand, within ECD_02517 at 2631.677 kb on + strand, within ECD_02517 at 2631.678 kb on - strand, within ECD_02517 at 2631.678 kb on - strand, within ECD_02517 at 2631.678 kb on - strand, within ECD_02517 at 2631.678 kb on - strand, within ECD_02517 at 2631.781 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.964 kb on - strand, within ECD_02517 at 2631.964 kb on - strand, within ECD_02517 at 2631.964 kb on - strand, within ECD_02517 at 2631.964 kb on - strand, within ECD_02517
Per-strain Table
Position Strand Gene LocusTag Fraction Bas49 remove 2,628,793 - -0.8 2,628,799 + +1.9 2,628,825 - -1.2 2,628,825 - -0.8 2,629,217 + ECD_02515 0.45 -0.5 2,629,217 + ECD_02515 0.45 -0.8 2,629,218 - ECD_02515 0.46 -0.0 2,629,248 + ECD_02515 0.49 -0.2 2,629,248 + ECD_02515 0.49 +1.1 2,629,265 + ECD_02515 0.50 +0.0 2,629,265 + ECD_02515 0.50 +1.6 2,629,265 + ECD_02515 0.50 +0.8 2,629,265 + ECD_02515 0.50 -0.2 2,629,265 + ECD_02515 0.50 -0.2 2,629,265 + ECD_02515 0.50 -0.8 2,629,266 - ECD_02515 0.50 -0.4 2,629,266 - ECD_02515 0.50 +0.2 2,629,266 - ECD_02515 0.50 -1.0 2,629,266 - ECD_02515 0.50 -2.3 2,629,286 + ECD_02515 0.52 +1.8 2,629,286 + ECD_02515 0.52 -0.4 2,629,286 + ECD_02515 0.52 +1.1 2,629,287 - ECD_02515 0.53 -1.8 2,629,376 + ECD_02515 0.62 +1.9 2,629,376 + ECD_02515 0.62 +1.4 2,629,376 + ECD_02515 0.62 +3.7 2,629,376 + ECD_02515 0.62 +1.3 2,629,376 + ECD_02515 0.62 +1.1 2,629,499 + ECD_02515 0.74 -0.0 2,629,499 + ECD_02515 0.74 +1.2 2,629,500 - ECD_02515 0.74 -1.4 2,629,500 - ECD_02515 0.74 +0.6 2,629,500 - ECD_02515 0.74 +0.5 2,629,664 - -2.1 2,629,748 + -2.5 2,629,749 - +0.8 2,629,773 - -1.0 2,629,931 + ECD_02516 0.13 -1.1 2,629,931 + ECD_02516 0.13 -1.2 2,629,932 - ECD_02516 0.13 +1.5 2,629,932 - ECD_02516 0.13 +0.6 2,629,932 - ECD_02516 0.13 +0.9 2,629,932 - ECD_02516 0.13 -1.2 2,629,932 - ECD_02516 0.13 +0.6 2,629,934 + ECD_02516 0.13 -0.7 2,629,935 - ECD_02516 0.13 +0.7 2,629,935 - ECD_02516 0.13 -1.0 2,629,935 - ECD_02516 0.13 -0.0 2,630,263 + ECD_02516 0.39 +1.8 2,630,264 - ECD_02516 0.39 -1.3 2,630,267 + ECD_02516 0.39 +0.6 2,630,267 + ECD_02516 0.39 -1.0 2,630,299 + ECD_02516 0.42 -1.0 2,630,299 + ECD_02516 0.42 -0.3 2,630,316 + ECD_02516 0.43 -1.4 2,630,316 + ECD_02516 0.43 -2.1 2,630,316 + ECD_02516 0.43 -2.0 2,630,320 + ECD_02516 0.43 +1.6 2,630,359 + ECD_02516 0.46 +3.7 2,630,359 + ECD_02516 0.46 +0.2 2,630,444 + ECD_02516 0.53 +5.4 2,630,445 - ECD_02516 0.53 +1.0 2,630,492 + ECD_02516 0.57 -0.2 2,630,685 + ECD_02516 0.72 -0.7 2,630,685 + ECD_02516 0.72 -1.5 2,630,685 + ECD_02516 0.72 +0.6 2,630,685 + ECD_02516 0.72 +1.0 2,630,685 + ECD_02516 0.72 -0.7 2,630,685 + ECD_02516 0.72 -2.3 2,630,685 + ECD_02516 0.72 +2.8 2,630,686 - ECD_02516 0.72 -0.7 2,630,686 - ECD_02516 0.72 +0.6 2,630,686 - ECD_02516 0.72 -0.4 2,630,686 - ECD_02516 0.72 -0.4 2,630,732 + ECD_02516 0.76 -0.8 2,630,753 + ECD_02516 0.78 +2.0 2,630,753 + ECD_02516 0.78 -0.3 2,630,753 + ECD_02516 0.78 -0.3 2,630,753 + ECD_02516 0.78 +1.2 2,630,753 + ECD_02516 0.78 +1.1 2,630,753 + ECD_02516 0.78 -1.1 2,630,753 + ECD_02516 0.78 +3.2 2,630,753 + ECD_02516 0.78 +0.9 2,630,753 + ECD_02516 0.78 -1.5 2,630,754 - ECD_02516 0.78 +0.4 2,630,930 + -0.5 2,630,930 + +1.0 2,630,930 + +0.2 2,630,930 + -0.2 2,630,930 + -1.8 2,630,930 + -1.7 2,630,930 + +0.3 2,630,931 - -1.4 2,630,931 - -0.6 2,630,931 - -0.0 2,630,931 - +1.4 2,630,931 - -2.6 2,630,932 + -0.6 2,630,932 + -2.8 2,630,932 + +0.6 2,630,932 + -2.5 2,630,933 - -1.0 2,630,946 + +0.8 2,630,946 + -1.4 2,630,946 + -1.8 2,630,947 - -1.1 2,630,971 + +0.9 2,630,971 + +0.5 2,630,971 + +0.6 2,630,972 - +1.0 2,631,001 + -0.9 2,631,001 + -1.7 2,631,001 + +0.2 2,631,001 + +0.4 2,631,001 + +1.9 2,631,001 + +1.0 2,631,001 + -2.1 2,631,001 + -0.0 2,631,001 + -0.2 2,631,002 - -1.6 2,631,002 - -1.6 2,631,002 - -1.7 2,631,002 - -0.9 2,631,002 - -0.6 2,631,002 - +0.4 2,631,002 - +0.6 2,631,002 - +0.1 2,631,002 - -0.4 2,631,002 - -0.4 2,631,002 - -1.2 2,631,002 - +3.1 2,631,002 - -0.2 2,631,016 - +0.6 2,631,029 - +0.6 2,631,029 - -1.0 2,631,056 - +1.6 2,631,077 + +4.2 2,631,077 + +1.2 2,631,082 + -2.2 2,631,083 - +0.4 2,631,347 - ECD_02517 0.20 -0.7 2,631,391 - ECD_02517 0.23 -2.2 2,631,404 + ECD_02517 0.24 -0.0 2,631,438 + ECD_02517 0.26 -2.0 2,631,438 + ECD_02517 0.26 +1.1 2,631,438 + ECD_02517 0.26 +2.2 2,631,439 - ECD_02517 0.26 +0.4 2,631,673 + ECD_02517 0.42 +1.1 2,631,673 + ECD_02517 0.42 +0.6 2,631,677 + ECD_02517 0.43 +0.8 2,631,677 + ECD_02517 0.43 -0.1 2,631,678 - ECD_02517 0.43 +1.6 2,631,678 - ECD_02517 0.43 +0.7 2,631,678 - ECD_02517 0.43 +1.6 2,631,678 - ECD_02517 0.43 +0.5 2,631,781 + ECD_02517 0.50 +1.4 2,631,945 + ECD_02517 0.61 -0.4 2,631,945 + ECD_02517 0.61 -0.1 2,631,945 + ECD_02517 0.61 +4.2 2,631,945 + ECD_02517 0.61 +1.6 2,631,945 + ECD_02517 0.61 +3.2 2,631,945 + ECD_02517 0.61 +2.4 2,631,964 - ECD_02517 0.62 -1.7 2,631,964 - ECD_02517 0.62 +1.7 2,631,964 - ECD_02517 0.62 -0.4 2,631,964 - ECD_02517 0.62 +0.6
Or see this region's nucleotide sequence