Strain Fitness in Escherichia coli BL21 around ECD_02516

Experiment: Bas49

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02515 and ECD_02516 are separated by 18 nucleotidesECD_02516 and ECD_02517 are separated by 22 nucleotides ECD_02515: ECD_02515 - carbon starvation protein, at 2,628,773 to 2,629,750 _02515 ECD_02516: ECD_02516 - L-2-hydroxyglutarate oxidase, at 2,629,769 to 2,631,037 _02516 ECD_02517: ECD_02517 - succinate-semialdehyde dehydrogenase I, NADP-dependent, at 2,631,060 to 2,632,508 _02517 Position (kb) 2629 2630 2631 2632Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2628.793 kb on - strandat 2628.799 kb on + strandat 2628.825 kb on - strandat 2628.825 kb on - strandat 2629.217 kb on + strand, within ECD_02515at 2629.217 kb on + strand, within ECD_02515at 2629.218 kb on - strand, within ECD_02515at 2629.248 kb on + strand, within ECD_02515at 2629.248 kb on + strand, within ECD_02515at 2629.265 kb on + strand, within ECD_02515at 2629.265 kb on + strand, within ECD_02515at 2629.265 kb on + strand, within ECD_02515at 2629.265 kb on + strand, within ECD_02515at 2629.265 kb on + strand, within ECD_02515at 2629.265 kb on + strand, within ECD_02515at 2629.266 kb on - strand, within ECD_02515at 2629.266 kb on - strand, within ECD_02515at 2629.266 kb on - strand, within ECD_02515at 2629.266 kb on - strand, within ECD_02515at 2629.286 kb on + strand, within ECD_02515at 2629.286 kb on + strand, within ECD_02515at 2629.286 kb on + strand, within ECD_02515at 2629.287 kb on - strand, within ECD_02515at 2629.376 kb on + strand, within ECD_02515at 2629.376 kb on + strand, within ECD_02515at 2629.376 kb on + strand, within ECD_02515at 2629.376 kb on + strand, within ECD_02515at 2629.376 kb on + strand, within ECD_02515at 2629.499 kb on + strand, within ECD_02515at 2629.499 kb on + strand, within ECD_02515at 2629.500 kb on - strand, within ECD_02515at 2629.500 kb on - strand, within ECD_02515at 2629.500 kb on - strand, within ECD_02515at 2629.664 kb on - strandat 2629.748 kb on + strandat 2629.749 kb on - strandat 2629.773 kb on - strandat 2629.931 kb on + strand, within ECD_02516at 2629.931 kb on + strand, within ECD_02516at 2629.932 kb on - strand, within ECD_02516at 2629.932 kb on - strand, within ECD_02516at 2629.932 kb on - strand, within ECD_02516at 2629.932 kb on - strand, within ECD_02516at 2629.932 kb on - strand, within ECD_02516at 2629.934 kb on + strand, within ECD_02516at 2629.935 kb on - strand, within ECD_02516at 2629.935 kb on - strand, within ECD_02516at 2629.935 kb on - strand, within ECD_02516at 2630.263 kb on + strand, within ECD_02516at 2630.264 kb on - strand, within ECD_02516at 2630.267 kb on + strand, within ECD_02516at 2630.267 kb on + strand, within ECD_02516at 2630.299 kb on + strand, within ECD_02516at 2630.299 kb on + strand, within ECD_02516at 2630.316 kb on + strand, within ECD_02516at 2630.316 kb on + strand, within ECD_02516at 2630.316 kb on + strand, within ECD_02516at 2630.320 kb on + strand, within ECD_02516at 2630.359 kb on + strand, within ECD_02516at 2630.359 kb on + strand, within ECD_02516at 2630.444 kb on + strand, within ECD_02516at 2630.445 kb on - strand, within ECD_02516at 2630.492 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.686 kb on - strand, within ECD_02516at 2630.686 kb on - strand, within ECD_02516at 2630.686 kb on - strand, within ECD_02516at 2630.686 kb on - strand, within ECD_02516at 2630.732 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.754 kb on - strand, within ECD_02516at 2630.930 kb on + strandat 2630.930 kb on + strandat 2630.930 kb on + strandat 2630.930 kb on + strandat 2630.930 kb on + strandat 2630.930 kb on + strandat 2630.930 kb on + strandat 2630.931 kb on - strandat 2630.931 kb on - strandat 2630.931 kb on - strandat 2630.931 kb on - strandat 2630.931 kb on - strandat 2630.932 kb on + strandat 2630.932 kb on + strandat 2630.932 kb on + strandat 2630.932 kb on + strandat 2630.933 kb on - strandat 2630.946 kb on + strandat 2630.946 kb on + strandat 2630.946 kb on + strandat 2630.947 kb on - strandat 2630.971 kb on + strandat 2630.971 kb on + strandat 2630.971 kb on + strandat 2630.972 kb on - strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.016 kb on - strandat 2631.029 kb on - strandat 2631.029 kb on - strandat 2631.056 kb on - strandat 2631.077 kb on + strandat 2631.077 kb on + strandat 2631.082 kb on + strandat 2631.083 kb on - strandat 2631.347 kb on - strand, within ECD_02517at 2631.391 kb on - strand, within ECD_02517at 2631.404 kb on + strand, within ECD_02517at 2631.438 kb on + strand, within ECD_02517at 2631.438 kb on + strand, within ECD_02517at 2631.438 kb on + strand, within ECD_02517at 2631.439 kb on - strand, within ECD_02517at 2631.673 kb on + strand, within ECD_02517at 2631.673 kb on + strand, within ECD_02517at 2631.677 kb on + strand, within ECD_02517at 2631.677 kb on + strand, within ECD_02517at 2631.678 kb on - strand, within ECD_02517at 2631.678 kb on - strand, within ECD_02517at 2631.678 kb on - strand, within ECD_02517at 2631.678 kb on - strand, within ECD_02517at 2631.781 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.964 kb on - strand, within ECD_02517at 2631.964 kb on - strand, within ECD_02517at 2631.964 kb on - strand, within ECD_02517at 2631.964 kb on - strand, within ECD_02517

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas49
remove
2,628,793 - -0.8
2,628,799 + +1.9
2,628,825 - -1.2
2,628,825 - -0.8
2,629,217 + ECD_02515 0.45 -0.5
2,629,217 + ECD_02515 0.45 -0.8
2,629,218 - ECD_02515 0.46 -0.0
2,629,248 + ECD_02515 0.49 -0.2
2,629,248 + ECD_02515 0.49 +1.1
2,629,265 + ECD_02515 0.50 +0.0
2,629,265 + ECD_02515 0.50 +1.6
2,629,265 + ECD_02515 0.50 +0.8
2,629,265 + ECD_02515 0.50 -0.2
2,629,265 + ECD_02515 0.50 -0.2
2,629,265 + ECD_02515 0.50 -0.8
2,629,266 - ECD_02515 0.50 -0.4
2,629,266 - ECD_02515 0.50 +0.2
2,629,266 - ECD_02515 0.50 -1.0
2,629,266 - ECD_02515 0.50 -2.3
2,629,286 + ECD_02515 0.52 +1.8
2,629,286 + ECD_02515 0.52 -0.4
2,629,286 + ECD_02515 0.52 +1.1
2,629,287 - ECD_02515 0.53 -1.8
2,629,376 + ECD_02515 0.62 +1.9
2,629,376 + ECD_02515 0.62 +1.4
2,629,376 + ECD_02515 0.62 +3.7
2,629,376 + ECD_02515 0.62 +1.3
2,629,376 + ECD_02515 0.62 +1.1
2,629,499 + ECD_02515 0.74 -0.0
2,629,499 + ECD_02515 0.74 +1.2
2,629,500 - ECD_02515 0.74 -1.4
2,629,500 - ECD_02515 0.74 +0.6
2,629,500 - ECD_02515 0.74 +0.5
2,629,664 - -2.1
2,629,748 + -2.5
2,629,749 - +0.8
2,629,773 - -1.0
2,629,931 + ECD_02516 0.13 -1.1
2,629,931 + ECD_02516 0.13 -1.2
2,629,932 - ECD_02516 0.13 +1.5
2,629,932 - ECD_02516 0.13 +0.6
2,629,932 - ECD_02516 0.13 +0.9
2,629,932 - ECD_02516 0.13 -1.2
2,629,932 - ECD_02516 0.13 +0.6
2,629,934 + ECD_02516 0.13 -0.7
2,629,935 - ECD_02516 0.13 +0.7
2,629,935 - ECD_02516 0.13 -1.0
2,629,935 - ECD_02516 0.13 -0.0
2,630,263 + ECD_02516 0.39 +1.8
2,630,264 - ECD_02516 0.39 -1.3
2,630,267 + ECD_02516 0.39 +0.6
2,630,267 + ECD_02516 0.39 -1.0
2,630,299 + ECD_02516 0.42 -1.0
2,630,299 + ECD_02516 0.42 -0.3
2,630,316 + ECD_02516 0.43 -1.4
2,630,316 + ECD_02516 0.43 -2.1
2,630,316 + ECD_02516 0.43 -2.0
2,630,320 + ECD_02516 0.43 +1.6
2,630,359 + ECD_02516 0.46 +3.7
2,630,359 + ECD_02516 0.46 +0.2
2,630,444 + ECD_02516 0.53 +5.4
2,630,445 - ECD_02516 0.53 +1.0
2,630,492 + ECD_02516 0.57 -0.2
2,630,685 + ECD_02516 0.72 -0.7
2,630,685 + ECD_02516 0.72 -1.5
2,630,685 + ECD_02516 0.72 +0.6
2,630,685 + ECD_02516 0.72 +1.0
2,630,685 + ECD_02516 0.72 -0.7
2,630,685 + ECD_02516 0.72 -2.3
2,630,685 + ECD_02516 0.72 +2.8
2,630,686 - ECD_02516 0.72 -0.7
2,630,686 - ECD_02516 0.72 +0.6
2,630,686 - ECD_02516 0.72 -0.4
2,630,686 - ECD_02516 0.72 -0.4
2,630,732 + ECD_02516 0.76 -0.8
2,630,753 + ECD_02516 0.78 +2.0
2,630,753 + ECD_02516 0.78 -0.3
2,630,753 + ECD_02516 0.78 -0.3
2,630,753 + ECD_02516 0.78 +1.2
2,630,753 + ECD_02516 0.78 +1.1
2,630,753 + ECD_02516 0.78 -1.1
2,630,753 + ECD_02516 0.78 +3.2
2,630,753 + ECD_02516 0.78 +0.9
2,630,753 + ECD_02516 0.78 -1.5
2,630,754 - ECD_02516 0.78 +0.4
2,630,930 + -0.5
2,630,930 + +1.0
2,630,930 + +0.2
2,630,930 + -0.2
2,630,930 + -1.8
2,630,930 + -1.7
2,630,930 + +0.3
2,630,931 - -1.4
2,630,931 - -0.6
2,630,931 - -0.0
2,630,931 - +1.4
2,630,931 - -2.6
2,630,932 + -0.6
2,630,932 + -2.8
2,630,932 + +0.6
2,630,932 + -2.5
2,630,933 - -1.0
2,630,946 + +0.8
2,630,946 + -1.4
2,630,946 + -1.8
2,630,947 - -1.1
2,630,971 + +0.9
2,630,971 + +0.5
2,630,971 + +0.6
2,630,972 - +1.0
2,631,001 + -0.9
2,631,001 + -1.7
2,631,001 + +0.2
2,631,001 + +0.4
2,631,001 + +1.9
2,631,001 + +1.0
2,631,001 + -2.1
2,631,001 + -0.0
2,631,001 + -0.2
2,631,002 - -1.6
2,631,002 - -1.6
2,631,002 - -1.7
2,631,002 - -0.9
2,631,002 - -0.6
2,631,002 - +0.4
2,631,002 - +0.6
2,631,002 - +0.1
2,631,002 - -0.4
2,631,002 - -0.4
2,631,002 - -1.2
2,631,002 - +3.1
2,631,002 - -0.2
2,631,016 - +0.6
2,631,029 - +0.6
2,631,029 - -1.0
2,631,056 - +1.6
2,631,077 + +4.2
2,631,077 + +1.2
2,631,082 + -2.2
2,631,083 - +0.4
2,631,347 - ECD_02517 0.20 -0.7
2,631,391 - ECD_02517 0.23 -2.2
2,631,404 + ECD_02517 0.24 -0.0
2,631,438 + ECD_02517 0.26 -2.0
2,631,438 + ECD_02517 0.26 +1.1
2,631,438 + ECD_02517 0.26 +2.2
2,631,439 - ECD_02517 0.26 +0.4
2,631,673 + ECD_02517 0.42 +1.1
2,631,673 + ECD_02517 0.42 +0.6
2,631,677 + ECD_02517 0.43 +0.8
2,631,677 + ECD_02517 0.43 -0.1
2,631,678 - ECD_02517 0.43 +1.6
2,631,678 - ECD_02517 0.43 +0.7
2,631,678 - ECD_02517 0.43 +1.6
2,631,678 - ECD_02517 0.43 +0.5
2,631,781 + ECD_02517 0.50 +1.4
2,631,945 + ECD_02517 0.61 -0.4
2,631,945 + ECD_02517 0.61 -0.1
2,631,945 + ECD_02517 0.61 +4.2
2,631,945 + ECD_02517 0.61 +1.6
2,631,945 + ECD_02517 0.61 +3.2
2,631,945 + ECD_02517 0.61 +2.4
2,631,964 - ECD_02517 0.62 -1.7
2,631,964 - ECD_02517 0.62 +1.7
2,631,964 - ECD_02517 0.62 -0.4
2,631,964 - ECD_02517 0.62 +0.6

Or see this region's nucleotide sequence