Strain Fitness in Escherichia coli BL21 around ECD_01562

Experiment: Bas49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01561 and ECD_01562 overlap by 48 nucleotidesECD_01562 and ECD_01563 are separated by 124 nucleotides ECD_01561: ECD_01561 - H(+)/Cl(-) exchange transporter, at 1,610,512 to 1,611,768 _01561 ECD_01562: ECD_01562 - putative dethiobiotin synthetase, at 1,611,721 to 1,612,416 _01562 ECD_01563: ECD_01563 - glucosamine anaerobic growth regulon transcriptional repressor; autorepressor, at 1,612,541 to 1,613,761 _01563 Position (kb) 1611 1612 1613Strain fitness (log2 ratio) -1 0 1 2 3at 1610.765 kb on - strand, within ECD_01561at 1611.043 kb on - strand, within ECD_01561at 1611.140 kb on + strand, within ECD_01561at 1611.777 kb on - strandat 1612.085 kb on - strand, within ECD_01562at 1612.201 kb on - strand, within ECD_01562at 1612.305 kb on + strand, within ECD_01562at 1612.446 kb on - strandat 1613.042 kb on - strand, within ECD_01563at 1613.271 kb on - strand, within ECD_01563at 1613.271 kb on - strand, within ECD_01563

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas49
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1,610,765 - ECD_01561 0.20 +0.2
1,611,043 - ECD_01561 0.42 +3.0
1,611,140 + ECD_01561 0.50 -0.2
1,611,777 - +0.3
1,612,085 - ECD_01562 0.52 -0.8
1,612,201 - ECD_01562 0.69 +2.2
1,612,305 + ECD_01562 0.84 -0.1
1,612,446 - -0.2
1,613,042 - ECD_01563 0.41 -1.4
1,613,271 - ECD_01563 0.60 -0.6
1,613,271 - ECD_01563 0.60 +0.2

Or see this region's nucleotide sequence