Strain Fitness in Escherichia coli BL21 around ECD_01079

Experiment: Bas49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01078 and ECD_01079 are separated by 11 nucleotidesECD_01079 and ECD_01080 are separated by 195 nucleotides ECD_01078: ECD_01078 - flagellar hook-filament junction protein 1, at 1,140,945 to 1,142,588 _01078 ECD_01079: ECD_01079 - flagellar hook-filament junction protein, at 1,142,600 to 1,143,553 _01079 ECD_01080: ECD_01080 - endoribonuclease; RNA-binding protein, at 1,143,749 to 1,146,934 _01080 Position (kb) 1142 1143 1144Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1141.617 kb on + strand, within ECD_01078at 1141.617 kb on + strand, within ECD_01078at 1141.617 kb on + strand, within ECD_01078at 1141.617 kb on + strand, within ECD_01078at 1141.722 kb on + strand, within ECD_01078at 1142.090 kb on + strand, within ECD_01078at 1142.218 kb on + strand, within ECD_01078at 1142.517 kb on + strandat 1142.576 kb on + strandat 1142.596 kb on + strandat 1142.596 kb on + strandat 1142.596 kb on + strandat 1142.783 kb on + strand, within ECD_01079at 1142.835 kb on + strand, within ECD_01079at 1142.835 kb on + strand, within ECD_01079at 1142.839 kb on + strand, within ECD_01079at 1143.056 kb on + strand, within ECD_01079at 1143.056 kb on + strand, within ECD_01079at 1143.114 kb on + strand, within ECD_01079at 1143.145 kb on + strand, within ECD_01079at 1143.289 kb on + strand, within ECD_01079at 1143.348 kb on + strand, within ECD_01079at 1143.348 kb on + strand, within ECD_01079at 1143.387 kb on + strand, within ECD_01079at 1143.500 kb on + strandat 1143.500 kb on + strandat 1143.502 kb on + strandat 1143.634 kb on + strandat 1143.748 kb on - strandat 1143.823 kb on + strandat 1144.035 kb on - strandat 1144.170 kb on - strand, within ECD_01080at 1144.341 kb on - strand, within ECD_01080at 1144.341 kb on - strand, within ECD_01080at 1144.374 kb on - strand, within ECD_01080

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas49
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1,141,617 + ECD_01078 0.41 +0.8
1,141,617 + ECD_01078 0.41 +1.3
1,141,617 + ECD_01078 0.41 +0.8
1,141,617 + ECD_01078 0.41 +2.1
1,141,722 + ECD_01078 0.47 +1.1
1,142,090 + ECD_01078 0.70 +0.6
1,142,218 + ECD_01078 0.77 +1.8
1,142,517 + +1.1
1,142,576 + +1.0
1,142,596 + +0.2
1,142,596 + -2.1
1,142,596 + +0.0
1,142,783 + ECD_01079 0.19 -0.8
1,142,835 + ECD_01079 0.25 +2.3
1,142,835 + ECD_01079 0.25 +2.0
1,142,839 + ECD_01079 0.25 +0.8
1,143,056 + ECD_01079 0.48 +0.5
1,143,056 + ECD_01079 0.48 +0.7
1,143,114 + ECD_01079 0.54 -1.0
1,143,145 + ECD_01079 0.57 +0.1
1,143,289 + ECD_01079 0.72 +2.8
1,143,348 + ECD_01079 0.78 -0.5
1,143,348 + ECD_01079 0.78 -0.3
1,143,387 + ECD_01079 0.82 -1.8
1,143,500 + +0.1
1,143,500 + -0.4
1,143,502 + -2.1
1,143,634 + +0.5
1,143,748 - -0.3
1,143,823 + +1.2
1,144,035 - -0.2
1,144,170 - ECD_01080 0.13 +1.1
1,144,341 - ECD_01080 0.19 +2.1
1,144,341 - ECD_01080 0.19 +1.6
1,144,374 - ECD_01080 0.20 +1.1

Or see this region's nucleotide sequence