Experiment: Bas49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00942 and ECD_00943 are separated by 82 nucleotides ECD_00943 and ECD_00944 are separated by 24 nucleotides ECD_00944 and ECD_00945 overlap by 10 nucleotides
ECD_00942: ECD_00942 - laminin-binding fimbrin subunit, at 1,002,957 to 1,003,496
_00942
ECD_00943: ECD_00943 - putative periplasmic pilin chaperone, at 1,003,579 to 1,004,280
_00943
ECD_00944: ECD_00944 - putative outer membrane fimbrial subunit export usher protein, at 1,004,305 to 1,006,905
_00944
ECD_00945: ECD_00945 - putative fimbrial-like adhesin protein, at 1,006,896 to 1,007,966
_00945
Position (kb)
1004
1005
1006
1007 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1003.873 kb on + strand, within ECD_00943 at 1004.308 kb on + strand at 1004.308 kb on + strand at 1004.308 kb on + strand at 1004.310 kb on + strand at 1004.310 kb on + strand at 1004.635 kb on - strand, within ECD_00944 at 1005.064 kb on + strand, within ECD_00944 at 1005.064 kb on + strand, within ECD_00944 at 1005.066 kb on + strand, within ECD_00944 at 1005.235 kb on + strand, within ECD_00944 at 1005.235 kb on + strand, within ECD_00944 at 1005.239 kb on + strand, within ECD_00944 at 1005.240 kb on - strand, within ECD_00944 at 1005.338 kb on - strand, within ECD_00944 at 1005.512 kb on - strand, within ECD_00944 at 1005.521 kb on - strand, within ECD_00944 at 1005.552 kb on + strand, within ECD_00944 at 1005.628 kb on - strand, within ECD_00944 at 1005.745 kb on + strand, within ECD_00944 at 1005.745 kb on + strand, within ECD_00944 at 1005.745 kb on + strand, within ECD_00944 at 1005.753 kb on + strand, within ECD_00944 at 1006.231 kb on + strand, within ECD_00944 at 1006.231 kb on + strand, within ECD_00944 at 1006.232 kb on - strand, within ECD_00944 at 1006.348 kb on + strand, within ECD_00944 at 1006.497 kb on + strand, within ECD_00944 at 1006.658 kb on + strand at 1006.765 kb on + strand at 1006.765 kb on + strand at 1006.796 kb on + strand at 1006.797 kb on - strand at 1006.931 kb on - strand at 1006.939 kb on + strand at 1006.963 kb on + strand at 1006.963 kb on + strand at 1007.006 kb on + strand, within ECD_00945 at 1007.007 kb on - strand, within ECD_00945 at 1007.022 kb on + strand, within ECD_00945 at 1007.354 kb on - strand, within ECD_00945 at 1007.401 kb on + strand, within ECD_00945 at 1007.458 kb on - strand, within ECD_00945 at 1007.467 kb on - strand, within ECD_00945 at 1007.499 kb on - strand, within ECD_00945 at 1007.505 kb on - strand, within ECD_00945 at 1007.523 kb on + strand, within ECD_00945 at 1007.523 kb on + strand, within ECD_00945 at 1007.523 kb on + strand, within ECD_00945 at 1007.626 kb on + strand, within ECD_00945 at 1007.759 kb on + strand, within ECD_00945 at 1007.814 kb on - strand, within ECD_00945 at 1007.814 kb on - strand, within ECD_00945
Per-strain Table
Position Strand Gene LocusTag Fraction Bas49 remove 1,003,873 + ECD_00943 0.42 -0.5 1,004,308 + -1.0 1,004,308 + +0.8 1,004,308 + -1.9 1,004,310 + -2.3 1,004,310 + -1.5 1,004,635 - ECD_00944 0.13 -0.2 1,005,064 + ECD_00944 0.29 -0.8 1,005,064 + ECD_00944 0.29 -1.5 1,005,066 + ECD_00944 0.29 -1.0 1,005,235 + ECD_00944 0.36 -1.3 1,005,235 + ECD_00944 0.36 +0.5 1,005,239 + ECD_00944 0.36 -1.6 1,005,240 - ECD_00944 0.36 +2.1 1,005,338 - ECD_00944 0.40 -1.0 1,005,512 - ECD_00944 0.46 -0.2 1,005,521 - ECD_00944 0.47 +3.6 1,005,552 + ECD_00944 0.48 -0.2 1,005,628 - ECD_00944 0.51 -1.6 1,005,745 + ECD_00944 0.55 -1.3 1,005,745 + ECD_00944 0.55 +1.8 1,005,745 + ECD_00944 0.55 +0.6 1,005,753 + ECD_00944 0.56 +1.3 1,006,231 + ECD_00944 0.74 +1.8 1,006,231 + ECD_00944 0.74 -2.2 1,006,232 - ECD_00944 0.74 -1.2 1,006,348 + ECD_00944 0.79 +1.8 1,006,497 + ECD_00944 0.84 +1.5 1,006,658 + +0.2 1,006,765 + +1.0 1,006,765 + -1.0 1,006,796 + -1.5 1,006,797 - -1.0 1,006,931 - -1.2 1,006,939 + +1.0 1,006,963 + -1.1 1,006,963 + -2.1 1,007,006 + ECD_00945 0.10 -1.8 1,007,007 - ECD_00945 0.10 +0.2 1,007,022 + ECD_00945 0.12 -1.5 1,007,354 - ECD_00945 0.43 -1.3 1,007,401 + ECD_00945 0.47 +1.0 1,007,458 - ECD_00945 0.52 +1.2 1,007,467 - ECD_00945 0.53 +3.1 1,007,499 - ECD_00945 0.56 +0.0 1,007,505 - ECD_00945 0.57 -2.0 1,007,523 + ECD_00945 0.59 -0.8 1,007,523 + ECD_00945 0.59 +0.8 1,007,523 + ECD_00945 0.59 +0.2 1,007,626 + ECD_00945 0.68 +0.8 1,007,759 + ECD_00945 0.81 +0.4 1,007,814 - ECD_00945 0.86 +1.8 1,007,814 - ECD_00945 0.86 -0.5
Or see this region's nucleotide sequence