Strain Fitness in Escherichia coli BL21 around ECD_00944

Experiment: Bas49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00942 and ECD_00943 are separated by 82 nucleotidesECD_00943 and ECD_00944 are separated by 24 nucleotidesECD_00944 and ECD_00945 overlap by 10 nucleotides ECD_00942: ECD_00942 - laminin-binding fimbrin subunit, at 1,002,957 to 1,003,496 _00942 ECD_00943: ECD_00943 - putative periplasmic pilin chaperone, at 1,003,579 to 1,004,280 _00943 ECD_00944: ECD_00944 - putative outer membrane fimbrial subunit export usher protein, at 1,004,305 to 1,006,905 _00944 ECD_00945: ECD_00945 - putative fimbrial-like adhesin protein, at 1,006,896 to 1,007,966 _00945 Position (kb) 1004 1005 1006 1007Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1003.873 kb on + strand, within ECD_00943at 1004.308 kb on + strandat 1004.308 kb on + strandat 1004.308 kb on + strandat 1004.310 kb on + strandat 1004.310 kb on + strandat 1004.635 kb on - strand, within ECD_00944at 1005.064 kb on + strand, within ECD_00944at 1005.064 kb on + strand, within ECD_00944at 1005.066 kb on + strand, within ECD_00944at 1005.235 kb on + strand, within ECD_00944at 1005.235 kb on + strand, within ECD_00944at 1005.239 kb on + strand, within ECD_00944at 1005.240 kb on - strand, within ECD_00944at 1005.338 kb on - strand, within ECD_00944at 1005.512 kb on - strand, within ECD_00944at 1005.521 kb on - strand, within ECD_00944at 1005.552 kb on + strand, within ECD_00944at 1005.628 kb on - strand, within ECD_00944at 1005.745 kb on + strand, within ECD_00944at 1005.745 kb on + strand, within ECD_00944at 1005.745 kb on + strand, within ECD_00944at 1005.753 kb on + strand, within ECD_00944at 1006.231 kb on + strand, within ECD_00944at 1006.231 kb on + strand, within ECD_00944at 1006.232 kb on - strand, within ECD_00944at 1006.348 kb on + strand, within ECD_00944at 1006.497 kb on + strand, within ECD_00944at 1006.658 kb on + strandat 1006.765 kb on + strandat 1006.765 kb on + strandat 1006.796 kb on + strandat 1006.797 kb on - strandat 1006.931 kb on - strandat 1006.939 kb on + strandat 1006.963 kb on + strandat 1006.963 kb on + strandat 1007.006 kb on + strand, within ECD_00945at 1007.007 kb on - strand, within ECD_00945at 1007.022 kb on + strand, within ECD_00945at 1007.354 kb on - strand, within ECD_00945at 1007.401 kb on + strand, within ECD_00945at 1007.458 kb on - strand, within ECD_00945at 1007.467 kb on - strand, within ECD_00945at 1007.499 kb on - strand, within ECD_00945at 1007.505 kb on - strand, within ECD_00945at 1007.523 kb on + strand, within ECD_00945at 1007.523 kb on + strand, within ECD_00945at 1007.523 kb on + strand, within ECD_00945at 1007.626 kb on + strand, within ECD_00945at 1007.759 kb on + strand, within ECD_00945at 1007.814 kb on - strand, within ECD_00945at 1007.814 kb on - strand, within ECD_00945

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas49
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1,003,873 + ECD_00943 0.42 -0.5
1,004,308 + -1.0
1,004,308 + +0.8
1,004,308 + -1.9
1,004,310 + -2.3
1,004,310 + -1.5
1,004,635 - ECD_00944 0.13 -0.2
1,005,064 + ECD_00944 0.29 -0.8
1,005,064 + ECD_00944 0.29 -1.5
1,005,066 + ECD_00944 0.29 -1.0
1,005,235 + ECD_00944 0.36 -1.3
1,005,235 + ECD_00944 0.36 +0.5
1,005,239 + ECD_00944 0.36 -1.6
1,005,240 - ECD_00944 0.36 +2.1
1,005,338 - ECD_00944 0.40 -1.0
1,005,512 - ECD_00944 0.46 -0.2
1,005,521 - ECD_00944 0.47 +3.6
1,005,552 + ECD_00944 0.48 -0.2
1,005,628 - ECD_00944 0.51 -1.6
1,005,745 + ECD_00944 0.55 -1.3
1,005,745 + ECD_00944 0.55 +1.8
1,005,745 + ECD_00944 0.55 +0.6
1,005,753 + ECD_00944 0.56 +1.3
1,006,231 + ECD_00944 0.74 +1.8
1,006,231 + ECD_00944 0.74 -2.2
1,006,232 - ECD_00944 0.74 -1.2
1,006,348 + ECD_00944 0.79 +1.8
1,006,497 + ECD_00944 0.84 +1.5
1,006,658 + +0.2
1,006,765 + +1.0
1,006,765 + -1.0
1,006,796 + -1.5
1,006,797 - -1.0
1,006,931 - -1.2
1,006,939 + +1.0
1,006,963 + -1.1
1,006,963 + -2.1
1,007,006 + ECD_00945 0.10 -1.8
1,007,007 - ECD_00945 0.10 +0.2
1,007,022 + ECD_00945 0.12 -1.5
1,007,354 - ECD_00945 0.43 -1.3
1,007,401 + ECD_00945 0.47 +1.0
1,007,458 - ECD_00945 0.52 +1.2
1,007,467 - ECD_00945 0.53 +3.1
1,007,499 - ECD_00945 0.56 +0.0
1,007,505 - ECD_00945 0.57 -2.0
1,007,523 + ECD_00945 0.59 -0.8
1,007,523 + ECD_00945 0.59 +0.8
1,007,523 + ECD_00945 0.59 +0.2
1,007,626 + ECD_00945 0.68 +0.8
1,007,759 + ECD_00945 0.81 +0.4
1,007,814 - ECD_00945 0.86 +1.8
1,007,814 - ECD_00945 0.86 -0.5

Or see this region's nucleotide sequence