Experiment: Bas49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00774 and ECD_00775 overlap by 4 nucleotides ECD_00775 and ECD_00776 are separated by 260 nucleotides ECD_00776 and ECD_00777 overlap by 4 nucleotides
ECD_00774: ECD_00774 - 23S rRNA m(6)A1618 methyltransferase, SAM-dependent, at 826,324 to 827,250
_00774
ECD_00775: ECD_00775 - mechanosensitive channel protein, intermediate conductance, at 827,247 to 829,472
_00775
ECD_00776: ECD_00776 - glutamine transporter subunit, at 829,733 to 830,455
_00776
ECD_00777: ECD_00777 - glutamine transporter subunit, at 830,452 to 831,111
_00777
Position (kb) 827
828
829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 826.269 kb on - strand at 826.323 kb on + strand at 826.672 kb on - strand, within ECD_00774 at 826.699 kb on + strand, within ECD_00774 at 827.102 kb on + strand, within ECD_00774 at 827.248 kb on + strand at 827.315 kb on - strand at 827.656 kb on + strand, within ECD_00775 at 827.677 kb on - strand, within ECD_00775 at 827.790 kb on - strand, within ECD_00775 at 827.832 kb on + strand, within ECD_00775 at 827.943 kb on - strand, within ECD_00775 at 828.242 kb on + strand, within ECD_00775 at 828.243 kb on - strand, within ECD_00775 at 828.243 kb on - strand, within ECD_00775 at 828.252 kb on - strand, within ECD_00775 at 828.252 kb on - strand, within ECD_00775 at 828.252 kb on - strand, within ECD_00775 at 828.524 kb on + strand, within ECD_00775 at 828.598 kb on - strand, within ECD_00775 at 828.598 kb on - strand, within ECD_00775 at 828.648 kb on + strand, within ECD_00775 at 828.649 kb on - strand, within ECD_00775 at 828.753 kb on + strand, within ECD_00775 at 828.754 kb on - strand, within ECD_00775 at 828.867 kb on + strand, within ECD_00775 at 828.867 kb on + strand, within ECD_00775 at 828.899 kb on + strand, within ECD_00775 at 828.985 kb on + strand, within ECD_00775 at 829.018 kb on + strand, within ECD_00775 at 829.400 kb on + strand at 829.400 kb on + strand at 829.510 kb on - strand at 829.511 kb on + strand at 829.511 kb on + strand at 829.511 kb on + strand at 829.511 kb on + strand at 829.511 kb on + strand at 829.511 kb on + strand at 829.512 kb on - strand at 829.588 kb on - strand at 829.731 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas49 remove 826,269 - +0.8 826,323 + +0.5 826,672 - ECD_00774 0.38 +2.3 826,699 + ECD_00774 0.40 +0.3 827,102 + ECD_00774 0.84 +1.7 827,248 + +1.7 827,315 - +2.3 827,656 + ECD_00775 0.18 +1.4 827,677 - ECD_00775 0.19 -1.1 827,790 - ECD_00775 0.24 +0.8 827,832 + ECD_00775 0.26 +1.7 827,943 - ECD_00775 0.31 -1.1 828,242 + ECD_00775 0.45 +0.9 828,243 - ECD_00775 0.45 -0.9 828,243 - ECD_00775 0.45 +1.8 828,252 - ECD_00775 0.45 +0.5 828,252 - ECD_00775 0.45 -2.0 828,252 - ECD_00775 0.45 +0.5 828,524 + ECD_00775 0.57 +1.2 828,598 - ECD_00775 0.61 -0.6 828,598 - ECD_00775 0.61 -0.2 828,648 + ECD_00775 0.63 +0.8 828,649 - ECD_00775 0.63 +0.9 828,753 + ECD_00775 0.68 -0.9 828,754 - ECD_00775 0.68 +0.0 828,867 + ECD_00775 0.73 +0.1 828,867 + ECD_00775 0.73 +0.9 828,899 + ECD_00775 0.74 +1.4 828,985 + ECD_00775 0.78 -1.8 829,018 + ECD_00775 0.80 +2.5 829,400 + +0.9 829,400 + -0.4 829,510 - +2.3 829,511 + +0.2 829,511 + +1.0 829,511 + +1.1 829,511 + -0.0 829,511 + +0.1 829,511 + +1.1 829,512 - -0.7 829,588 - -3.1 829,731 + +1.2
Or see this region's nucleotide sequence