Experiment: Bas49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00634 and ECD_00635 are separated by 59 nucleotides ECD_00635 and ECD_00636 are separated by 332 nucleotides
ECD_00634: ECD_00634 - N-acetylglucosamine-6-phosphate deacetylase, at 661,477 to 662,625
_00634
ECD_00635: ECD_00635 - glucosamine-6-phosphate deaminase, at 662,685 to 663,485
_00635
ECD_00636: ECD_00636 - N-acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components, at 663,818 to 665,764
_00636
Position (kb) 662
663
664 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 661.749 kb on - strand, within ECD_00634 at 661.749 kb on - strand, within ECD_00634 at 661.751 kb on - strand, within ECD_00634 at 661.891 kb on - strand, within ECD_00634 at 661.902 kb on - strand, within ECD_00634 at 661.974 kb on - strand, within ECD_00634 at 662.329 kb on - strand, within ECD_00634 at 662.347 kb on - strand, within ECD_00634 at 662.396 kb on - strand, within ECD_00634 at 662.827 kb on - strand, within ECD_00635 at 662.912 kb on + strand, within ECD_00635 at 662.913 kb on - strand, within ECD_00635 at 662.913 kb on - strand, within ECD_00635 at 663.104 kb on - strand, within ECD_00635 at 663.265 kb on + strand, within ECD_00635 at 663.340 kb on + strand, within ECD_00635 at 663.509 kb on + strand at 663.509 kb on + strand at 663.542 kb on - strand at 663.618 kb on + strand at 663.814 kb on + strand at 663.921 kb on + strand at 663.938 kb on - strand at 663.978 kb on + strand at 664.055 kb on + strand, within ECD_00636 at 664.055 kb on + strand, within ECD_00636 at 664.126 kb on + strand, within ECD_00636 at 664.152 kb on - strand, within ECD_00636 at 664.476 kb on - strand, within ECD_00636
Per-strain Table
Position Strand Gene LocusTag Fraction Bas49 remove 661,749 - ECD_00634 0.24 -0.1 661,749 - ECD_00634 0.24 +0.5 661,751 - ECD_00634 0.24 +0.5 661,891 - ECD_00634 0.36 -0.1 661,902 - ECD_00634 0.37 +2.3 661,974 - ECD_00634 0.43 +1.4 662,329 - ECD_00634 0.74 +1.5 662,347 - ECD_00634 0.76 -0.1 662,396 - ECD_00634 0.80 -0.5 662,827 - ECD_00635 0.18 +3.9 662,912 + ECD_00635 0.28 +1.3 662,913 - ECD_00635 0.28 -0.2 662,913 - ECD_00635 0.28 +0.9 663,104 - ECD_00635 0.52 +1.1 663,265 + ECD_00635 0.72 -1.1 663,340 + ECD_00635 0.82 +1.6 663,509 + +0.8 663,509 + +1.9 663,542 - +1.8 663,618 + -1.1 663,814 + +1.5 663,921 + -1.8 663,938 - +0.2 663,978 + -1.9 664,055 + ECD_00636 0.12 +0.8 664,055 + ECD_00636 0.12 +0.0 664,126 + ECD_00636 0.16 +0.6 664,152 - ECD_00636 0.17 +1.1 664,476 - ECD_00636 0.34 -0.1
Or see this region's nucleotide sequence