Experiment: Bas49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00274 and ECD_00275 are separated by 39 nucleotides ECD_00275 and ECD_00276 overlap by 11 nucleotides ECD_00276 and ECD_00277 overlap by 1 nucleotides
ECD_00274: ECD_00274 - ankyrin repeat protein, at 304,908 to 305,513
_00274
ECD_00275: ECD_00275 - DUF2877 family protein, at 305,553 to 306,416
_00275
ECD_00276: ECD_00276 - putative NAD(P)-binding succinyl-CoA synthase, at 306,406 to 307,953
_00276
ECD_00277: ECD_00277 - DUF1116 family protein, at 307,953 to 309,371
_00277
Position (kb) 306
307
308 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 305.433 kb on + strand, within ECD_00274 at 305.511 kb on + strand at 305.511 kb on + strand at 305.778 kb on - strand, within ECD_00275 at 305.778 kb on - strand, within ECD_00275 at 305.803 kb on + strand, within ECD_00275 at 305.803 kb on + strand, within ECD_00275 at 305.804 kb on - strand, within ECD_00275 at 306.326 kb on + strand, within ECD_00275 at 306.326 kb on + strand, within ECD_00275 at 306.405 kb on + strand at 306.419 kb on + strand at 306.420 kb on - strand at 306.439 kb on + strand at 306.484 kb on - strand at 306.672 kb on + strand, within ECD_00276 at 306.984 kb on + strand, within ECD_00276 at 307.167 kb on + strand, within ECD_00276 at 307.168 kb on - strand, within ECD_00276 at 307.429 kb on + strand, within ECD_00276 at 307.429 kb on + strand, within ECD_00276 at 307.430 kb on - strand, within ECD_00276 at 307.433 kb on + strand, within ECD_00276 at 307.433 kb on + strand, within ECD_00276 at 307.549 kb on - strand, within ECD_00276 at 307.811 kb on - strand at 307.844 kb on + strand at 307.844 kb on + strand at 307.988 kb on + strand at 307.988 kb on + strand at 307.989 kb on - strand at 308.039 kb on - strand at 308.039 kb on - strand at 308.451 kb on - strand, within ECD_00277 at 308.490 kb on + strand, within ECD_00277 at 308.492 kb on + strand, within ECD_00277 at 308.492 kb on + strand, within ECD_00277 at 308.492 kb on + strand, within ECD_00277 at 308.492 kb on + strand, within ECD_00277 at 308.493 kb on - strand, within ECD_00277 at 308.638 kb on + strand, within ECD_00277 at 308.796 kb on + strand, within ECD_00277 at 308.797 kb on - strand, within ECD_00277 at 308.862 kb on + strand, within ECD_00277
Per-strain Table
Position Strand Gene LocusTag Fraction Bas49 remove 305,433 + ECD_00274 0.87 +3.9 305,511 + +1.3 305,511 + +0.8 305,778 - ECD_00275 0.26 +3.0 305,778 - ECD_00275 0.26 +3.4 305,803 + ECD_00275 0.29 +1.6 305,803 + ECD_00275 0.29 +1.1 305,804 - ECD_00275 0.29 +1.3 306,326 + ECD_00275 0.89 -2.1 306,326 + ECD_00275 0.89 +1.6 306,405 + +1.5 306,419 + -1.5 306,420 - +2.5 306,439 + -0.6 306,484 - +1.7 306,672 + ECD_00276 0.17 +1.3 306,984 + ECD_00276 0.37 -0.8 307,167 + ECD_00276 0.49 +1.1 307,168 - ECD_00276 0.49 +1.2 307,429 + ECD_00276 0.66 +1.2 307,429 + ECD_00276 0.66 +2.2 307,430 - ECD_00276 0.66 +1.7 307,433 + ECD_00276 0.66 +0.9 307,433 + ECD_00276 0.66 +1.1 307,549 - ECD_00276 0.74 +3.0 307,811 - +2.1 307,844 + +2.3 307,844 + +1.5 307,988 + +1.6 307,988 + +1.6 307,989 - +0.8 308,039 - +2.2 308,039 - -0.4 308,451 - ECD_00277 0.35 +3.8 308,490 + ECD_00277 0.38 +1.8 308,492 + ECD_00277 0.38 +1.2 308,492 + ECD_00277 0.38 +0.9 308,492 + ECD_00277 0.38 +0.7 308,492 + ECD_00277 0.38 +1.3 308,493 - ECD_00277 0.38 -0.1 308,638 + ECD_00277 0.48 +1.6 308,796 + ECD_00277 0.59 +1.9 308,797 - ECD_00277 0.59 +3.7 308,862 + ECD_00277 0.64 -0.1
Or see this region's nucleotide sequence