Strain Fitness in Escherichia coli BL21 around ECD_00267

Experiment: Bas49

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00265 and ECD_00266 are separated by 75 nucleotidesECD_00266 and ECD_00267 are separated by 212 nucleotidesECD_00267 and ECD_00268 are separated by 13 nucleotides ECD_00265: ECD_00265 - hypothetical protein, at 294,036 to 294,248 _00265 ECD_00266: ECD_00266 - putative inner membrane protein, at 294,324 to 294,992 _00266 ECD_00267: ECD_00267 - choline dehydrogenase, a flavoprotein, at 295,205 to 296,875 _00267 ECD_00268: ECD_00268 - betaine aldehyde dehydrogenase, NAD-dependent, at 296,889 to 298,361 _00268 Position (kb) 295 296 297Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 294.224 kb on + strand, within ECD_00265at 294.901 kb on - strand, within ECD_00266at 295.447 kb on + strand, within ECD_00267at 295.481 kb on - strand, within ECD_00267at 295.635 kb on + strand, within ECD_00267at 295.635 kb on + strand, within ECD_00267at 295.636 kb on - strand, within ECD_00267at 295.636 kb on - strand, within ECD_00267at 295.636 kb on - strand, within ECD_00267at 295.636 kb on - strand, within ECD_00267at 295.640 kb on - strand, within ECD_00267at 295.764 kb on + strand, within ECD_00267at 295.765 kb on - strand, within ECD_00267at 295.960 kb on - strand, within ECD_00267at 295.969 kb on - strand, within ECD_00267at 296.108 kb on + strand, within ECD_00267at 296.108 kb on + strand, within ECD_00267at 296.109 kb on - strand, within ECD_00267at 296.215 kb on + strand, within ECD_00267at 296.224 kb on + strand, within ECD_00267at 296.239 kb on + strand, within ECD_00267at 296.240 kb on - strand, within ECD_00267at 296.463 kb on + strand, within ECD_00267at 296.502 kb on + strand, within ECD_00267at 296.506 kb on - strand, within ECD_00267at 296.698 kb on - strand, within ECD_00267at 296.698 kb on - strand, within ECD_00267at 296.863 kb on - strandat 296.891 kb on - strandat 296.891 kb on - strandat 296.945 kb on - strandat 297.170 kb on - strand, within ECD_00268at 297.291 kb on + strand, within ECD_00268at 297.392 kb on + strand, within ECD_00268at 297.392 kb on + strand, within ECD_00268at 297.393 kb on - strand, within ECD_00268at 297.503 kb on + strand, within ECD_00268at 297.503 kb on + strand, within ECD_00268at 297.644 kb on + strand, within ECD_00268at 297.645 kb on - strand, within ECD_00268at 297.645 kb on - strand, within ECD_00268at 297.759 kb on + strand, within ECD_00268at 297.760 kb on - strand, within ECD_00268

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas49
remove
294,224 + ECD_00265 0.88 +3.4
294,901 - ECD_00266 0.86 +5.1
295,447 + ECD_00267 0.14 +2.8
295,481 - ECD_00267 0.17 +1.3
295,635 + ECD_00267 0.26 -0.1
295,635 + ECD_00267 0.26 +2.3
295,636 - ECD_00267 0.26 +2.2
295,636 - ECD_00267 0.26 +1.5
295,636 - ECD_00267 0.26 +3.5
295,636 - ECD_00267 0.26 +3.2
295,640 - ECD_00267 0.26 +1.9
295,764 + ECD_00267 0.33 +2.9
295,765 - ECD_00267 0.34 +1.9
295,960 - ECD_00267 0.45 -0.9
295,969 - ECD_00267 0.46 +2.6
296,108 + ECD_00267 0.54 +2.1
296,108 + ECD_00267 0.54 +2.2
296,109 - ECD_00267 0.54 +2.3
296,215 + ECD_00267 0.60 +2.2
296,224 + ECD_00267 0.61 +2.6
296,239 + ECD_00267 0.62 +1.5
296,240 - ECD_00267 0.62 +2.6
296,463 + ECD_00267 0.75 +1.6
296,502 + ECD_00267 0.78 +2.1
296,506 - ECD_00267 0.78 +1.9
296,698 - ECD_00267 0.89 +1.7
296,698 - ECD_00267 0.89 +2.3
296,863 - +2.5
296,891 - +2.2
296,891 - +2.1
296,945 - +4.2
297,170 - ECD_00268 0.19 +2.7
297,291 + ECD_00268 0.27 +0.8
297,392 + ECD_00268 0.34 +0.9
297,392 + ECD_00268 0.34 +2.3
297,393 - ECD_00268 0.34 +0.5
297,503 + ECD_00268 0.42 +0.5
297,503 + ECD_00268 0.42 +0.3
297,644 + ECD_00268 0.51 +0.9
297,645 - ECD_00268 0.51 +3.0
297,645 - ECD_00268 0.51 +3.0
297,759 + ECD_00268 0.59 +2.5
297,760 - ECD_00268 0.59 +0.5

Or see this region's nucleotide sequence