Strain Fitness in Escherichia coli BL21 around ECD_00263

Experiment: Bas49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00262 and ECD_00263 are separated by 10 nucleotidesECD_00263 and ECD_00264 overlap by 8 nucleotidesECD_00264 and ECD_00265 overlap by 46 nucleotidesECD_00265 and ECD_00266 are separated by 75 nucleotides ECD_00262: ECD_00262 - cysteine-rich LutA family protein; putative electron transport chain YkgEFG component, at 291,236 to 291,955 _00262 ECD_00263: ECD_00263 - ferridoxin-like LutB family protein; putative electron transport chain YkgEFG component, at 291,966 to 293,393 _00263 ECD_00264: ECD_00264 - LutC family protein; putative electron transport chain YkgEFG component, at 293,386 to 294,081 _00264 ECD_00265: ECD_00265 - hypothetical protein, at 294,036 to 294,248 _00265 ECD_00266: ECD_00266 - putative inner membrane protein, at 294,324 to 294,992 _00266 Position (kb) 291 292 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 291.205 kb on + strandat 291.231 kb on + strandat 291.389 kb on - strand, within ECD_00262at 291.454 kb on + strand, within ECD_00262at 291.479 kb on + strand, within ECD_00262at 291.688 kb on + strand, within ECD_00262at 291.689 kb on - strand, within ECD_00262at 291.742 kb on + strand, within ECD_00262at 291.742 kb on + strand, within ECD_00262at 291.742 kb on + strand, within ECD_00262at 291.845 kb on + strand, within ECD_00262at 291.849 kb on + strand, within ECD_00262at 291.849 kb on + strand, within ECD_00262at 291.850 kb on - strand, within ECD_00262at 291.928 kb on + strandat 291.928 kb on + strandat 291.983 kb on + strandat 292.064 kb on + strandat 292.157 kb on + strand, within ECD_00263at 292.259 kb on - strand, within ECD_00263at 292.386 kb on + strand, within ECD_00263at 292.386 kb on + strand, within ECD_00263at 292.387 kb on - strand, within ECD_00263at 292.567 kb on + strand, within ECD_00263at 292.649 kb on + strand, within ECD_00263at 292.670 kb on + strand, within ECD_00263at 292.694 kb on + strand, within ECD_00263at 292.717 kb on + strand, within ECD_00263at 292.717 kb on + strand, within ECD_00263at 292.717 kb on + strand, within ECD_00263at 292.724 kb on - strand, within ECD_00263at 292.724 kb on - strand, within ECD_00263at 292.925 kb on + strand, within ECD_00263at 292.926 kb on - strand, within ECD_00263at 292.939 kb on - strand, within ECD_00263at 292.946 kb on + strand, within ECD_00263at 293.187 kb on + strand, within ECD_00263at 293.196 kb on - strand, within ECD_00263at 293.256 kb on - strandat 293.412 kb on + strandat 293.475 kb on + strand, within ECD_00264at 293.482 kb on + strand, within ECD_00264at 293.482 kb on + strand, within ECD_00264at 293.482 kb on + strand, within ECD_00264at 293.482 kb on + strand, within ECD_00264at 293.508 kb on + strand, within ECD_00264at 293.556 kb on + strand, within ECD_00264at 293.556 kb on + strand, within ECD_00264at 293.557 kb on - strand, within ECD_00264at 293.557 kb on - strand, within ECD_00264at 293.557 kb on - strand, within ECD_00264at 293.610 kb on - strand, within ECD_00264at 293.619 kb on + strand, within ECD_00264at 293.619 kb on + strand, within ECD_00264at 293.619 kb on + strand, within ECD_00264at 293.683 kb on - strand, within ECD_00264at 293.746 kb on - strand, within ECD_00264at 293.782 kb on + strand, within ECD_00264at 293.782 kb on + strand, within ECD_00264at 293.870 kb on - strand, within ECD_00264at 294.058 kb on + strandat 294.224 kb on + strand, within ECD_00265

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas49
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291,205 + +3.4
291,231 + +2.8
291,389 - ECD_00262 0.21 +2.4
291,454 + ECD_00262 0.30 +3.4
291,479 + ECD_00262 0.34 +3.6
291,688 + ECD_00262 0.63 +2.9
291,689 - ECD_00262 0.63 +1.9
291,742 + ECD_00262 0.70 +3.4
291,742 + ECD_00262 0.70 +2.2
291,742 + ECD_00262 0.70 +2.4
291,845 + ECD_00262 0.85 +2.3
291,849 + ECD_00262 0.85 +3.7
291,849 + ECD_00262 0.85 +2.3
291,850 - ECD_00262 0.85 +1.6
291,928 + +1.2
291,928 + +3.3
291,983 + +0.9
292,064 + -0.5
292,157 + ECD_00263 0.13 +2.4
292,259 - ECD_00263 0.21 +3.5
292,386 + ECD_00263 0.29 +1.3
292,386 + ECD_00263 0.29 +2.0
292,387 - ECD_00263 0.29 +2.6
292,567 + ECD_00263 0.42 +1.7
292,649 + ECD_00263 0.48 +0.9
292,670 + ECD_00263 0.49 +1.3
292,694 + ECD_00263 0.51 +3.0
292,717 + ECD_00263 0.53 +3.5
292,717 + ECD_00263 0.53 +2.6
292,717 + ECD_00263 0.53 +2.3
292,724 - ECD_00263 0.53 +0.5
292,724 - ECD_00263 0.53 +2.9
292,925 + ECD_00263 0.67 +2.6
292,926 - ECD_00263 0.67 -1.3
292,939 - ECD_00263 0.68 +2.5
292,946 + ECD_00263 0.69 +2.4
293,187 + ECD_00263 0.86 +3.5
293,196 - ECD_00263 0.86 +2.4
293,256 - +2.6
293,412 + +2.7
293,475 + ECD_00264 0.13 +2.4
293,482 + ECD_00264 0.14 +1.0
293,482 + ECD_00264 0.14 +3.0
293,482 + ECD_00264 0.14 +4.1
293,482 + ECD_00264 0.14 +4.5
293,508 + ECD_00264 0.18 +2.9
293,556 + ECD_00264 0.24 +2.1
293,556 + ECD_00264 0.24 -2.9
293,557 - ECD_00264 0.25 +2.5
293,557 - ECD_00264 0.25 +3.2
293,557 - ECD_00264 0.25 +1.8
293,610 - ECD_00264 0.32 +2.2
293,619 + ECD_00264 0.33 +1.8
293,619 + ECD_00264 0.33 +1.5
293,619 + ECD_00264 0.33 +3.1
293,683 - ECD_00264 0.43 +3.5
293,746 - ECD_00264 0.52 +3.1
293,782 + ECD_00264 0.57 +2.7
293,782 + ECD_00264 0.57 +1.8
293,870 - ECD_00264 0.70 +2.3
294,058 + +2.1
294,224 + ECD_00265 0.88 +3.4

Or see this region's nucleotide sequence