Strain Fitness in Escherichia coli BL21 around ECD_00262

Experiment: Bas49

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00261 and ECD_00262 are separated by 526 nucleotidesECD_00262 and ECD_00263 are separated by 10 nucleotides ECD_00261: ECD_00261 - reactive chlorine species (RCS)-specific activator of the rcl genes, at 289,855 to 290,709 _00261 ECD_00262: ECD_00262 - cysteine-rich LutA family protein; putative electron transport chain YkgEFG component, at 291,236 to 291,955 _00262 ECD_00263: ECD_00263 - ferridoxin-like LutB family protein; putative electron transport chain YkgEFG component, at 291,966 to 293,393 _00263 Position (kb) 291 292Strain fitness (log2 ratio) -1 0 1 2 3 4at 290.349 kb on + strand, within ECD_00261at 290.402 kb on + strand, within ECD_00261at 290.402 kb on + strand, within ECD_00261at 291.205 kb on + strandat 291.231 kb on + strandat 291.389 kb on - strand, within ECD_00262at 291.454 kb on + strand, within ECD_00262at 291.479 kb on + strand, within ECD_00262at 291.688 kb on + strand, within ECD_00262at 291.689 kb on - strand, within ECD_00262at 291.742 kb on + strand, within ECD_00262at 291.742 kb on + strand, within ECD_00262at 291.742 kb on + strand, within ECD_00262at 291.845 kb on + strand, within ECD_00262at 291.849 kb on + strand, within ECD_00262at 291.849 kb on + strand, within ECD_00262at 291.850 kb on - strand, within ECD_00262at 291.928 kb on + strandat 291.928 kb on + strandat 291.983 kb on + strandat 292.064 kb on + strandat 292.157 kb on + strand, within ECD_00263at 292.259 kb on - strand, within ECD_00263at 292.386 kb on + strand, within ECD_00263at 292.386 kb on + strand, within ECD_00263at 292.387 kb on - strand, within ECD_00263at 292.567 kb on + strand, within ECD_00263at 292.649 kb on + strand, within ECD_00263at 292.670 kb on + strand, within ECD_00263at 292.694 kb on + strand, within ECD_00263at 292.717 kb on + strand, within ECD_00263at 292.717 kb on + strand, within ECD_00263at 292.717 kb on + strand, within ECD_00263at 292.724 kb on - strand, within ECD_00263at 292.724 kb on - strand, within ECD_00263at 292.925 kb on + strand, within ECD_00263at 292.926 kb on - strand, within ECD_00263at 292.939 kb on - strand, within ECD_00263at 292.946 kb on + strand, within ECD_00263

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas49
remove
290,349 + ECD_00261 0.58 +2.5
290,402 + ECD_00261 0.64 +4.3
290,402 + ECD_00261 0.64 +2.3
291,205 + +3.4
291,231 + +2.8
291,389 - ECD_00262 0.21 +2.4
291,454 + ECD_00262 0.30 +3.4
291,479 + ECD_00262 0.34 +3.6
291,688 + ECD_00262 0.63 +2.9
291,689 - ECD_00262 0.63 +1.9
291,742 + ECD_00262 0.70 +3.4
291,742 + ECD_00262 0.70 +2.2
291,742 + ECD_00262 0.70 +2.4
291,845 + ECD_00262 0.85 +2.3
291,849 + ECD_00262 0.85 +3.7
291,849 + ECD_00262 0.85 +2.3
291,850 - ECD_00262 0.85 +1.6
291,928 + +1.2
291,928 + +3.3
291,983 + +0.9
292,064 + -0.5
292,157 + ECD_00263 0.13 +2.4
292,259 - ECD_00263 0.21 +3.5
292,386 + ECD_00263 0.29 +1.3
292,386 + ECD_00263 0.29 +2.0
292,387 - ECD_00263 0.29 +2.6
292,567 + ECD_00263 0.42 +1.7
292,649 + ECD_00263 0.48 +0.9
292,670 + ECD_00263 0.49 +1.3
292,694 + ECD_00263 0.51 +3.0
292,717 + ECD_00263 0.53 +3.5
292,717 + ECD_00263 0.53 +2.6
292,717 + ECD_00263 0.53 +2.3
292,724 - ECD_00263 0.53 +0.5
292,724 - ECD_00263 0.53 +2.9
292,925 + ECD_00263 0.67 +2.6
292,926 - ECD_00263 0.67 -1.3
292,939 - ECD_00263 0.68 +2.5
292,946 + ECD_00263 0.69 +2.4

Or see this region's nucleotide sequence