Experiment: Bas49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00249 and ECD_00250 overlap by 11 nucleotides ECD_00250 and ECD_00251 are separated by 25 nucleotides ECD_00251 and ECD_00252 are separated by 57 nucleotides
ECD_00249: ECD_00249 - polymerized tip adhesin of ECP fibers, at 275,359 to 277,002
_00249
ECD_00250: ECD_00250 - ECP production outer membrane protein, at 276,992 to 279,517
_00250
ECD_00251: ECD_00251 - ECP production pilus chaperone, at 279,543 to 280,211
_00251
ECD_00252: ECD_00252 - ECP pilin, at 280,269 to 280,904
_00252
Position (kb)
276
277
278
279
280 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 276.023 kb on + strand, within ECD_00249 at 276.023 kb on + strand, within ECD_00249 at 276.059 kb on + strand, within ECD_00249 at 276.059 kb on + strand, within ECD_00249 at 276.060 kb on - strand, within ECD_00249 at 276.060 kb on - strand, within ECD_00249 at 276.065 kb on + strand, within ECD_00249 at 276.072 kb on + strand, within ECD_00249 at 276.118 kb on - strand, within ECD_00249 at 276.169 kb on + strand, within ECD_00249 at 276.172 kb on - strand, within ECD_00249 at 276.212 kb on + strand, within ECD_00249 at 276.212 kb on + strand, within ECD_00249 at 276.212 kb on + strand, within ECD_00249 at 276.212 kb on + strand, within ECD_00249 at 276.225 kb on + strand, within ECD_00249 at 276.225 kb on + strand, within ECD_00249 at 276.232 kb on + strand, within ECD_00249 at 276.232 kb on + strand, within ECD_00249 at 276.336 kb on + strand, within ECD_00249 at 276.336 kb on + strand, within ECD_00249 at 276.337 kb on - strand, within ECD_00249 at 276.350 kb on - strand, within ECD_00249 at 276.437 kb on + strand, within ECD_00249 at 276.437 kb on + strand, within ECD_00249 at 276.438 kb on - strand, within ECD_00249 at 276.474 kb on + strand, within ECD_00249 at 276.475 kb on - strand, within ECD_00249 at 276.507 kb on - strand, within ECD_00249 at 276.625 kb on - strand, within ECD_00249 at 276.639 kb on - strand, within ECD_00249 at 276.700 kb on - strand, within ECD_00249 at 276.717 kb on + strand, within ECD_00249 at 276.788 kb on + strand, within ECD_00249 at 276.985 kb on + strand at 277.389 kb on - strand, within ECD_00250 at 277.389 kb on - strand, within ECD_00250 at 277.428 kb on + strand, within ECD_00250 at 277.429 kb on - strand, within ECD_00250 at 277.429 kb on - strand, within ECD_00250 at 277.432 kb on + strand, within ECD_00250 at 277.433 kb on - strand, within ECD_00250 at 277.433 kb on - strand, within ECD_00250 at 277.433 kb on - strand, within ECD_00250 at 277.433 kb on - strand, within ECD_00250 at 277.433 kb on - strand, within ECD_00250 at 277.433 kb on - strand, within ECD_00250 at 277.433 kb on - strand, within ECD_00250 at 277.433 kb on - strand, within ECD_00250 at 277.512 kb on - strand, within ECD_00250 at 277.558 kb on + strand, within ECD_00250 at 277.621 kb on + strand, within ECD_00250 at 277.861 kb on + strand, within ECD_00250 at 277.861 kb on + strand, within ECD_00250 at 277.862 kb on - strand, within ECD_00250 at 277.864 kb on - strand, within ECD_00250 at 277.897 kb on + strand, within ECD_00250 at 277.899 kb on + strand, within ECD_00250 at 277.899 kb on + strand, within ECD_00250 at 277.963 kb on - strand, within ECD_00250 at 277.975 kb on - strand, within ECD_00250 at 277.975 kb on - strand, within ECD_00250 at 278.143 kb on + strand, within ECD_00250 at 278.143 kb on + strand, within ECD_00250 at 278.401 kb on + strand, within ECD_00250 at 278.420 kb on + strand, within ECD_00250 at 278.471 kb on - strand, within ECD_00250 at 278.535 kb on + strand, within ECD_00250 at 278.535 kb on + strand, within ECD_00250 at 278.536 kb on - strand, within ECD_00250 at 278.545 kb on - strand, within ECD_00250 at 278.550 kb on - strand, within ECD_00250 at 278.628 kb on - strand, within ECD_00250 at 278.628 kb on - strand, within ECD_00250 at 278.628 kb on - strand, within ECD_00250 at 278.628 kb on - strand, within ECD_00250 at 278.826 kb on + strand, within ECD_00250 at 278.827 kb on - strand, within ECD_00250 at 278.827 kb on - strand, within ECD_00250 at 278.827 kb on - strand, within ECD_00250 at 278.837 kb on - strand, within ECD_00250 at 278.839 kb on - strand, within ECD_00250 at 278.839 kb on - strand, within ECD_00250 at 278.840 kb on + strand, within ECD_00250 at 278.937 kb on + strand, within ECD_00250 at 278.937 kb on + strand, within ECD_00250 at 278.951 kb on - strand, within ECD_00250 at 278.978 kb on - strand, within ECD_00250 at 278.979 kb on + strand, within ECD_00250 at 278.980 kb on - strand, within ECD_00250 at 279.004 kb on + strand, within ECD_00250 at 279.059 kb on + strand, within ECD_00250 at 279.059 kb on + strand, within ECD_00250 at 279.261 kb on - strand, within ECD_00250 at 279.341 kb on - strand at 279.341 kb on - strand at 279.342 kb on + strand at 279.343 kb on - strand at 279.395 kb on - strand at 279.423 kb on - strand at 279.423 kb on - strand at 279.540 kb on + strand at 279.540 kb on + strand at 279.540 kb on + strand at 279.544 kb on + strand at 279.545 kb on - strand at 279.545 kb on - strand at 279.564 kb on - strand at 279.649 kb on + strand, within ECD_00251 at 279.650 kb on - strand, within ECD_00251 at 279.669 kb on - strand, within ECD_00251 at 279.922 kb on + strand, within ECD_00251 at 279.981 kb on + strand, within ECD_00251 at 280.124 kb on + strand, within ECD_00251 at 280.134 kb on + strand, within ECD_00251 at 280.135 kb on - strand, within ECD_00251 at 280.135 kb on - strand, within ECD_00251 at 280.135 kb on - strand, within ECD_00251 at 280.137 kb on - strand, within ECD_00251 at 280.137 kb on - strand, within ECD_00251 at 280.137 kb on - strand, within ECD_00251 at 280.257 kb on - strand at 280.270 kb on + strand at 280.270 kb on + strand at 280.339 kb on + strand, within ECD_00252 at 280.358 kb on + strand, within ECD_00252 at 280.449 kb on - strand, within ECD_00252
Per-strain Table
Position Strand Gene LocusTag Fraction Bas49 remove 276,023 + ECD_00249 0.40 +1.4 276,023 + ECD_00249 0.40 +0.4 276,059 + ECD_00249 0.43 +0.4 276,059 + ECD_00249 0.43 +1.3 276,060 - ECD_00249 0.43 +1.9 276,060 - ECD_00249 0.43 +0.2 276,065 + ECD_00249 0.43 -0.9 276,072 + ECD_00249 0.43 +1.2 276,118 - ECD_00249 0.46 +0.3 276,169 + ECD_00249 0.49 +1.3 276,172 - ECD_00249 0.49 +0.9 276,212 + ECD_00249 0.52 +1.7 276,212 + ECD_00249 0.52 +0.2 276,212 + ECD_00249 0.52 +1.9 276,212 + ECD_00249 0.52 +1.7 276,225 + ECD_00249 0.53 -1.0 276,225 + ECD_00249 0.53 +0.4 276,232 + ECD_00249 0.53 +1.2 276,232 + ECD_00249 0.53 +2.6 276,336 + ECD_00249 0.59 -1.4 276,336 + ECD_00249 0.59 +1.0 276,337 - ECD_00249 0.59 -1.4 276,350 - ECD_00249 0.60 -0.3 276,437 + ECD_00249 0.66 -0.9 276,437 + ECD_00249 0.66 +2.4 276,438 - ECD_00249 0.66 +1.2 276,474 + ECD_00249 0.68 +1.7 276,475 - ECD_00249 0.68 +2.4 276,507 - ECD_00249 0.70 +1.1 276,625 - ECD_00249 0.77 -1.9 276,639 - ECD_00249 0.78 +0.7 276,700 - ECD_00249 0.82 +0.7 276,717 + ECD_00249 0.83 +0.4 276,788 + ECD_00249 0.87 +2.1 276,985 + +0.4 277,389 - ECD_00250 0.16 +2.4 277,389 - ECD_00250 0.16 +2.1 277,428 + ECD_00250 0.17 +2.4 277,429 - ECD_00250 0.17 +1.8 277,429 - ECD_00250 0.17 +2.1 277,432 + ECD_00250 0.17 +0.4 277,433 - ECD_00250 0.17 -2.4 277,433 - ECD_00250 0.17 +2.3 277,433 - ECD_00250 0.17 +1.7 277,433 - ECD_00250 0.17 +1.4 277,433 - ECD_00250 0.17 +1.6 277,433 - ECD_00250 0.17 +2.5 277,433 - ECD_00250 0.17 -0.6 277,433 - ECD_00250 0.17 -2.7 277,512 - ECD_00250 0.21 +1.2 277,558 + ECD_00250 0.22 +2.4 277,621 + ECD_00250 0.25 +1.3 277,861 + ECD_00250 0.34 +1.6 277,861 + ECD_00250 0.34 +0.8 277,862 - ECD_00250 0.34 +0.3 277,864 - ECD_00250 0.35 +2.2 277,897 + ECD_00250 0.36 +0.9 277,899 + ECD_00250 0.36 +0.9 277,899 + ECD_00250 0.36 +1.4 277,963 - ECD_00250 0.38 +0.6 277,975 - ECD_00250 0.39 -0.4 277,975 - ECD_00250 0.39 +0.8 278,143 + ECD_00250 0.46 +1.4 278,143 + ECD_00250 0.46 +2.3 278,401 + ECD_00250 0.56 +2.2 278,420 + ECD_00250 0.57 +2.8 278,471 - ECD_00250 0.59 +1.8 278,535 + ECD_00250 0.61 +4.0 278,535 + ECD_00250 0.61 +2.8 278,536 - ECD_00250 0.61 +0.8 278,545 - ECD_00250 0.61 +1.5 278,550 - ECD_00250 0.62 +1.2 278,628 - ECD_00250 0.65 -1.9 278,628 - ECD_00250 0.65 +2.0 278,628 - ECD_00250 0.65 +2.0 278,628 - ECD_00250 0.65 +3.6 278,826 + ECD_00250 0.73 +1.0 278,827 - ECD_00250 0.73 +0.7 278,827 - ECD_00250 0.73 +1.9 278,827 - ECD_00250 0.73 -0.7 278,837 - ECD_00250 0.73 +1.7 278,839 - ECD_00250 0.73 +0.4 278,839 - ECD_00250 0.73 +0.9 278,840 + ECD_00250 0.73 +2.6 278,937 + ECD_00250 0.77 +2.2 278,937 + ECD_00250 0.77 -2.3 278,951 - ECD_00250 0.78 +0.0 278,978 - ECD_00250 0.79 +1.9 278,979 + ECD_00250 0.79 +2.0 278,980 - ECD_00250 0.79 +1.3 279,004 + ECD_00250 0.80 +0.2 279,059 + ECD_00250 0.82 -0.7 279,059 + ECD_00250 0.82 +2.4 279,261 - ECD_00250 0.90 +0.3 279,341 - +1.7 279,341 - +0.1 279,342 + +1.1 279,343 - +0.5 279,395 - +0.6 279,423 - +0.0 279,423 - +1.2 279,540 + -1.4 279,540 + +0.5 279,540 + +2.1 279,544 + +0.9 279,545 - +2.0 279,545 - +1.2 279,564 - +0.0 279,649 + ECD_00251 0.16 +0.6 279,650 - ECD_00251 0.16 +2.7 279,669 - ECD_00251 0.19 +2.7 279,922 + ECD_00251 0.57 -1.2 279,981 + ECD_00251 0.65 +1.2 280,124 + ECD_00251 0.87 +0.1 280,134 + ECD_00251 0.88 -1.2 280,135 - ECD_00251 0.88 +1.2 280,135 - ECD_00251 0.88 +0.6 280,135 - ECD_00251 0.88 +2.7 280,137 - ECD_00251 0.89 +3.0 280,137 - ECD_00251 0.89 +2.0 280,137 - ECD_00251 0.89 +0.5 280,257 - +1.4 280,270 + +0.3 280,270 + +0.2 280,339 + ECD_00252 0.11 +0.5 280,358 + ECD_00252 0.14 -1.2 280,449 - ECD_00252 0.28 +1.3
Or see this region's nucleotide sequence