Strain Fitness in Escherichia coli BL21 around ECD_00250

Experiment: Bas49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00249 and ECD_00250 overlap by 11 nucleotidesECD_00250 and ECD_00251 are separated by 25 nucleotidesECD_00251 and ECD_00252 are separated by 57 nucleotides ECD_00249: ECD_00249 - polymerized tip adhesin of ECP fibers, at 275,359 to 277,002 _00249 ECD_00250: ECD_00250 - ECP production outer membrane protein, at 276,992 to 279,517 _00250 ECD_00251: ECD_00251 - ECP production pilus chaperone, at 279,543 to 280,211 _00251 ECD_00252: ECD_00252 - ECP pilin, at 280,269 to 280,904 _00252 Position (kb) 276 277 278 279 280Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 276.023 kb on + strand, within ECD_00249at 276.023 kb on + strand, within ECD_00249at 276.059 kb on + strand, within ECD_00249at 276.059 kb on + strand, within ECD_00249at 276.060 kb on - strand, within ECD_00249at 276.060 kb on - strand, within ECD_00249at 276.065 kb on + strand, within ECD_00249at 276.072 kb on + strand, within ECD_00249at 276.118 kb on - strand, within ECD_00249at 276.169 kb on + strand, within ECD_00249at 276.172 kb on - strand, within ECD_00249at 276.212 kb on + strand, within ECD_00249at 276.212 kb on + strand, within ECD_00249at 276.212 kb on + strand, within ECD_00249at 276.212 kb on + strand, within ECD_00249at 276.225 kb on + strand, within ECD_00249at 276.225 kb on + strand, within ECD_00249at 276.232 kb on + strand, within ECD_00249at 276.232 kb on + strand, within ECD_00249at 276.336 kb on + strand, within ECD_00249at 276.336 kb on + strand, within ECD_00249at 276.337 kb on - strand, within ECD_00249at 276.350 kb on - strand, within ECD_00249at 276.437 kb on + strand, within ECD_00249at 276.437 kb on + strand, within ECD_00249at 276.438 kb on - strand, within ECD_00249at 276.474 kb on + strand, within ECD_00249at 276.475 kb on - strand, within ECD_00249at 276.507 kb on - strand, within ECD_00249at 276.625 kb on - strand, within ECD_00249at 276.639 kb on - strand, within ECD_00249at 276.700 kb on - strand, within ECD_00249at 276.717 kb on + strand, within ECD_00249at 276.788 kb on + strand, within ECD_00249at 276.985 kb on + strandat 277.389 kb on - strand, within ECD_00250at 277.389 kb on - strand, within ECD_00250at 277.428 kb on + strand, within ECD_00250at 277.429 kb on - strand, within ECD_00250at 277.429 kb on - strand, within ECD_00250at 277.432 kb on + strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.512 kb on - strand, within ECD_00250at 277.558 kb on + strand, within ECD_00250at 277.621 kb on + strand, within ECD_00250at 277.861 kb on + strand, within ECD_00250at 277.861 kb on + strand, within ECD_00250at 277.862 kb on - strand, within ECD_00250at 277.864 kb on - strand, within ECD_00250at 277.897 kb on + strand, within ECD_00250at 277.899 kb on + strand, within ECD_00250at 277.899 kb on + strand, within ECD_00250at 277.963 kb on - strand, within ECD_00250at 277.975 kb on - strand, within ECD_00250at 277.975 kb on - strand, within ECD_00250at 278.143 kb on + strand, within ECD_00250at 278.143 kb on + strand, within ECD_00250at 278.401 kb on + strand, within ECD_00250at 278.420 kb on + strand, within ECD_00250at 278.471 kb on - strand, within ECD_00250at 278.535 kb on + strand, within ECD_00250at 278.535 kb on + strand, within ECD_00250at 278.536 kb on - strand, within ECD_00250at 278.545 kb on - strand, within ECD_00250at 278.550 kb on - strand, within ECD_00250at 278.628 kb on - strand, within ECD_00250at 278.628 kb on - strand, within ECD_00250at 278.628 kb on - strand, within ECD_00250at 278.628 kb on - strand, within ECD_00250at 278.826 kb on + strand, within ECD_00250at 278.827 kb on - strand, within ECD_00250at 278.827 kb on - strand, within ECD_00250at 278.827 kb on - strand, within ECD_00250at 278.837 kb on - strand, within ECD_00250at 278.839 kb on - strand, within ECD_00250at 278.839 kb on - strand, within ECD_00250at 278.840 kb on + strand, within ECD_00250at 278.937 kb on + strand, within ECD_00250at 278.937 kb on + strand, within ECD_00250at 278.951 kb on - strand, within ECD_00250at 278.978 kb on - strand, within ECD_00250at 278.979 kb on + strand, within ECD_00250at 278.980 kb on - strand, within ECD_00250at 279.004 kb on + strand, within ECD_00250at 279.059 kb on + strand, within ECD_00250at 279.059 kb on + strand, within ECD_00250at 279.261 kb on - strand, within ECD_00250at 279.341 kb on - strandat 279.341 kb on - strandat 279.342 kb on + strandat 279.343 kb on - strandat 279.395 kb on - strandat 279.423 kb on - strandat 279.423 kb on - strandat 279.540 kb on + strandat 279.540 kb on + strandat 279.540 kb on + strandat 279.544 kb on + strandat 279.545 kb on - strandat 279.545 kb on - strandat 279.564 kb on - strandat 279.649 kb on + strand, within ECD_00251at 279.650 kb on - strand, within ECD_00251at 279.669 kb on - strand, within ECD_00251at 279.922 kb on + strand, within ECD_00251at 279.981 kb on + strand, within ECD_00251at 280.124 kb on + strand, within ECD_00251at 280.134 kb on + strand, within ECD_00251at 280.135 kb on - strand, within ECD_00251at 280.135 kb on - strand, within ECD_00251at 280.135 kb on - strand, within ECD_00251at 280.137 kb on - strand, within ECD_00251at 280.137 kb on - strand, within ECD_00251at 280.137 kb on - strand, within ECD_00251at 280.257 kb on - strandat 280.270 kb on + strandat 280.270 kb on + strandat 280.339 kb on + strand, within ECD_00252at 280.358 kb on + strand, within ECD_00252at 280.449 kb on - strand, within ECD_00252

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas49
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276,023 + ECD_00249 0.40 +1.4
276,023 + ECD_00249 0.40 +0.4
276,059 + ECD_00249 0.43 +0.4
276,059 + ECD_00249 0.43 +1.3
276,060 - ECD_00249 0.43 +1.9
276,060 - ECD_00249 0.43 +0.2
276,065 + ECD_00249 0.43 -0.9
276,072 + ECD_00249 0.43 +1.2
276,118 - ECD_00249 0.46 +0.3
276,169 + ECD_00249 0.49 +1.3
276,172 - ECD_00249 0.49 +0.9
276,212 + ECD_00249 0.52 +1.7
276,212 + ECD_00249 0.52 +0.2
276,212 + ECD_00249 0.52 +1.9
276,212 + ECD_00249 0.52 +1.7
276,225 + ECD_00249 0.53 -1.0
276,225 + ECD_00249 0.53 +0.4
276,232 + ECD_00249 0.53 +1.2
276,232 + ECD_00249 0.53 +2.6
276,336 + ECD_00249 0.59 -1.4
276,336 + ECD_00249 0.59 +1.0
276,337 - ECD_00249 0.59 -1.4
276,350 - ECD_00249 0.60 -0.3
276,437 + ECD_00249 0.66 -0.9
276,437 + ECD_00249 0.66 +2.4
276,438 - ECD_00249 0.66 +1.2
276,474 + ECD_00249 0.68 +1.7
276,475 - ECD_00249 0.68 +2.4
276,507 - ECD_00249 0.70 +1.1
276,625 - ECD_00249 0.77 -1.9
276,639 - ECD_00249 0.78 +0.7
276,700 - ECD_00249 0.82 +0.7
276,717 + ECD_00249 0.83 +0.4
276,788 + ECD_00249 0.87 +2.1
276,985 + +0.4
277,389 - ECD_00250 0.16 +2.4
277,389 - ECD_00250 0.16 +2.1
277,428 + ECD_00250 0.17 +2.4
277,429 - ECD_00250 0.17 +1.8
277,429 - ECD_00250 0.17 +2.1
277,432 + ECD_00250 0.17 +0.4
277,433 - ECD_00250 0.17 -2.4
277,433 - ECD_00250 0.17 +2.3
277,433 - ECD_00250 0.17 +1.7
277,433 - ECD_00250 0.17 +1.4
277,433 - ECD_00250 0.17 +1.6
277,433 - ECD_00250 0.17 +2.5
277,433 - ECD_00250 0.17 -0.6
277,433 - ECD_00250 0.17 -2.7
277,512 - ECD_00250 0.21 +1.2
277,558 + ECD_00250 0.22 +2.4
277,621 + ECD_00250 0.25 +1.3
277,861 + ECD_00250 0.34 +1.6
277,861 + ECD_00250 0.34 +0.8
277,862 - ECD_00250 0.34 +0.3
277,864 - ECD_00250 0.35 +2.2
277,897 + ECD_00250 0.36 +0.9
277,899 + ECD_00250 0.36 +0.9
277,899 + ECD_00250 0.36 +1.4
277,963 - ECD_00250 0.38 +0.6
277,975 - ECD_00250 0.39 -0.4
277,975 - ECD_00250 0.39 +0.8
278,143 + ECD_00250 0.46 +1.4
278,143 + ECD_00250 0.46 +2.3
278,401 + ECD_00250 0.56 +2.2
278,420 + ECD_00250 0.57 +2.8
278,471 - ECD_00250 0.59 +1.8
278,535 + ECD_00250 0.61 +4.0
278,535 + ECD_00250 0.61 +2.8
278,536 - ECD_00250 0.61 +0.8
278,545 - ECD_00250 0.61 +1.5
278,550 - ECD_00250 0.62 +1.2
278,628 - ECD_00250 0.65 -1.9
278,628 - ECD_00250 0.65 +2.0
278,628 - ECD_00250 0.65 +2.0
278,628 - ECD_00250 0.65 +3.6
278,826 + ECD_00250 0.73 +1.0
278,827 - ECD_00250 0.73 +0.7
278,827 - ECD_00250 0.73 +1.9
278,827 - ECD_00250 0.73 -0.7
278,837 - ECD_00250 0.73 +1.7
278,839 - ECD_00250 0.73 +0.4
278,839 - ECD_00250 0.73 +0.9
278,840 + ECD_00250 0.73 +2.6
278,937 + ECD_00250 0.77 +2.2
278,937 + ECD_00250 0.77 -2.3
278,951 - ECD_00250 0.78 +0.0
278,978 - ECD_00250 0.79 +1.9
278,979 + ECD_00250 0.79 +2.0
278,980 - ECD_00250 0.79 +1.3
279,004 + ECD_00250 0.80 +0.2
279,059 + ECD_00250 0.82 -0.7
279,059 + ECD_00250 0.82 +2.4
279,261 - ECD_00250 0.90 +0.3
279,341 - +1.7
279,341 - +0.1
279,342 + +1.1
279,343 - +0.5
279,395 - +0.6
279,423 - +0.0
279,423 - +1.2
279,540 + -1.4
279,540 + +0.5
279,540 + +2.1
279,544 + +0.9
279,545 - +2.0
279,545 - +1.2
279,564 - +0.0
279,649 + ECD_00251 0.16 +0.6
279,650 - ECD_00251 0.16 +2.7
279,669 - ECD_00251 0.19 +2.7
279,922 + ECD_00251 0.57 -1.2
279,981 + ECD_00251 0.65 +1.2
280,124 + ECD_00251 0.87 +0.1
280,134 + ECD_00251 0.88 -1.2
280,135 - ECD_00251 0.88 +1.2
280,135 - ECD_00251 0.88 +0.6
280,135 - ECD_00251 0.88 +2.7
280,137 - ECD_00251 0.89 +3.0
280,137 - ECD_00251 0.89 +2.0
280,137 - ECD_00251 0.89 +0.5
280,257 - +1.4
280,270 + +0.3
280,270 + +0.2
280,339 + ECD_00252 0.11 +0.5
280,358 + ECD_00252 0.14 -1.2
280,449 - ECD_00252 0.28 +1.3

Or see this region's nucleotide sequence