Experiment: Bas49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00069 and ECD_00070 overlap by 25 nucleotides ECD_00070 and ECD_00071 are separated by 163 nucleotides
ECD_00069: ECD_00069 - thiamine/thiamine pyrophosphate ABC transporter permease, at 75,716 to 77,326
_00069
ECD_00070: ECD_00070 - thiamine/thiamine pyrophosphate/thiamine monophosphate ABC transporter periplasmic binding protein, at 77,302 to 78,285
_00070
ECD_00071: ECD_00071 - transcriptional DNA-binding transcriptional activator of sgrS sRNA, at 78,449 to 80,104
_00071
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 76.386 kb on - strand, within ECD_00069 at 76.445 kb on + strand, within ECD_00069 at 76.446 kb on - strand, within ECD_00069 at 76.615 kb on - strand, within ECD_00069 at 76.621 kb on - strand, within ECD_00069 at 76.635 kb on + strand, within ECD_00069 at 76.636 kb on - strand, within ECD_00069 at 76.720 kb on + strand, within ECD_00069 at 76.721 kb on - strand, within ECD_00069 at 76.721 kb on - strand, within ECD_00069 at 76.721 kb on - strand, within ECD_00069 at 76.857 kb on - strand, within ECD_00069 at 76.857 kb on - strand, within ECD_00069 at 76.903 kb on + strand, within ECD_00069 at 76.984 kb on - strand, within ECD_00069 at 76.984 kb on - strand, within ECD_00069 at 77.028 kb on - strand, within ECD_00069 at 77.083 kb on - strand, within ECD_00069 at 77.083 kb on - strand, within ECD_00069 at 77.175 kb on + strand at 77.175 kb on + strand at 77.175 kb on + strand at 77.176 kb on - strand at 77.176 kb on - strand at 77.276 kb on + strand at 77.277 kb on - strand at 77.288 kb on + strand at 77.490 kb on + strand, within ECD_00070 at 77.594 kb on + strand, within ECD_00070 at 77.595 kb on - strand, within ECD_00070 at 77.599 kb on - strand, within ECD_00070 at 77.599 kb on - strand, within ECD_00070 at 77.625 kb on - strand, within ECD_00070 at 77.642 kb on + strand, within ECD_00070 at 77.643 kb on - strand, within ECD_00070 at 77.651 kb on - strand, within ECD_00070 at 77.780 kb on - strand, within ECD_00070 at 77.802 kb on + strand, within ECD_00070 at 77.803 kb on - strand, within ECD_00070 at 77.916 kb on - strand, within ECD_00070 at 77.916 kb on - strand, within ECD_00070 at 77.946 kb on + strand, within ECD_00070 at 78.142 kb on - strand, within ECD_00070 at 78.142 kb on - strand, within ECD_00070 at 78.142 kb on - strand, within ECD_00070 at 78.142 kb on - strand, within ECD_00070 at 78.206 kb on + strand at 78.207 kb on - strand at 78.210 kb on + strand at 78.210 kb on + strand at 78.211 kb on - strand at 78.211 kb on - strand at 78.212 kb on + strand at 78.212 kb on + strand at 78.424 kb on + strand at 78.425 kb on - strand at 78.513 kb on - strand at 78.513 kb on - strand at 78.523 kb on + strand at 78.523 kb on + strand at 78.523 kb on + strand at 78.787 kb on - strand, within ECD_00071 at 78.880 kb on - strand, within ECD_00071 at 78.927 kb on - strand, within ECD_00071 at 78.927 kb on - strand, within ECD_00071 at 78.927 kb on - strand, within ECD_00071 at 79.006 kb on - strand, within ECD_00071 at 79.006 kb on - strand, within ECD_00071 at 79.032 kb on + strand, within ECD_00071 at 79.092 kb on - strand, within ECD_00071 at 79.096 kb on - strand, within ECD_00071 at 79.099 kb on - strand, within ECD_00071 at 79.099 kb on - strand, within ECD_00071 at 79.155 kb on - strand, within ECD_00071 at 79.208 kb on - strand, within ECD_00071
Per-strain Table
Position Strand Gene LocusTag Fraction Bas49 remove 76,386 - ECD_00069 0.42 +3.2 76,445 + ECD_00069 0.45 +1.0 76,446 - ECD_00069 0.45 +2.0 76,615 - ECD_00069 0.56 +2.0 76,621 - ECD_00069 0.56 +1.8 76,635 + ECD_00069 0.57 +2.0 76,636 - ECD_00069 0.57 +0.4 76,720 + ECD_00069 0.62 +2.6 76,721 - ECD_00069 0.62 +1.2 76,721 - ECD_00069 0.62 +3.7 76,721 - ECD_00069 0.62 -2.4 76,857 - ECD_00069 0.71 +0.7 76,857 - ECD_00069 0.71 +1.4 76,903 + ECD_00069 0.74 +1.4 76,984 - ECD_00069 0.79 -0.2 76,984 - ECD_00069 0.79 +1.7 77,028 - ECD_00069 0.81 +1.5 77,083 - ECD_00069 0.85 +1.1 77,083 - ECD_00069 0.85 +2.0 77,175 + +0.2 77,175 + -2.1 77,175 + +1.0 77,176 - +0.7 77,176 - +1.2 77,276 + -0.2 77,277 - +0.6 77,288 + -0.5 77,490 + ECD_00070 0.19 +0.3 77,594 + ECD_00070 0.30 +0.9 77,595 - ECD_00070 0.30 +2.1 77,599 - ECD_00070 0.30 +0.6 77,599 - ECD_00070 0.30 +1.4 77,625 - ECD_00070 0.33 +0.7 77,642 + ECD_00070 0.35 +2.0 77,643 - ECD_00070 0.35 +0.6 77,651 - ECD_00070 0.35 +1.6 77,780 - ECD_00070 0.49 +0.9 77,802 + ECD_00070 0.51 +1.6 77,803 - ECD_00070 0.51 -1.2 77,916 - ECD_00070 0.62 +2.2 77,916 - ECD_00070 0.62 +1.7 77,946 + ECD_00070 0.65 +0.8 78,142 - ECD_00070 0.85 +0.7 78,142 - ECD_00070 0.85 +0.7 78,142 - ECD_00070 0.85 +1.6 78,142 - ECD_00070 0.85 +0.8 78,206 + +1.8 78,207 - +4.2 78,210 + -0.3 78,210 + +2.5 78,211 - +1.0 78,211 - +2.5 78,212 + -1.8 78,212 + +0.1 78,424 + -0.8 78,425 - +2.0 78,513 - +2.2 78,513 - -2.2 78,523 + +0.2 78,523 + -1.4 78,523 + +0.2 78,787 - ECD_00071 0.20 -1.4 78,880 - ECD_00071 0.26 +1.4 78,927 - ECD_00071 0.29 +2.5 78,927 - ECD_00071 0.29 -0.9 78,927 - ECD_00071 0.29 +1.0 79,006 - ECD_00071 0.34 +2.1 79,006 - ECD_00071 0.34 -3.4 79,032 + ECD_00071 0.35 -0.2 79,092 - ECD_00071 0.39 -0.5 79,096 - ECD_00071 0.39 -0.7 79,099 - ECD_00071 0.39 +1.4 79,099 - ECD_00071 0.39 +0.3 79,155 - ECD_00071 0.43 +4.4 79,208 - ECD_00071 0.46 +1.0
Or see this region's nucleotide sequence