Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25455

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25445 and LU632_RS25450 are separated by 1 nucleotidesLU632_RS25450 and LU632_RS25455 are separated by 278 nucleotidesLU632_RS25455 and LU632_RS25460 are separated by 173 nucleotides LU632_RS25445: LU632_RS25445 - relaxase/mobilization nuclease domain-containing protein, at 24,220 to 26,151 _RS25445 LU632_RS25450: LU632_RS25450 - mobilization protein, at 26,153 to 26,497 _RS25450 LU632_RS25455: LU632_RS25455 - molybdopterin-guanine dinucleotide biosynthesis protein MobC, at 26,776 to 27,087 _RS25455 LU632_RS25460: LU632_RS25460 - DUF945 domain-containing protein, at 27,261 to 28,094 _RS25460 Position (kb) 26 27 28Strain fitness (log2 ratio) -2 -1 0 1 2at 25.802 kb on + strand, within LU632_RS25445at 26.087 kb on + strandat 26.115 kb on + strandat 26.195 kb on + strand, within LU632_RS25450at 26.221 kb on + strand, within LU632_RS25450at 26.221 kb on + strand, within LU632_RS25450at 26.281 kb on - strand, within LU632_RS25450at 26.395 kb on + strand, within LU632_RS25450at 26.492 kb on - strandat 26.535 kb on + strandat 26.536 kb on - strandat 26.653 kb on + strandat 26.656 kb on - strandat 26.714 kb on - strandat 26.730 kb on - strandat 26.796 kb on + strandat 26.797 kb on - strandat 26.820 kb on + strand, within LU632_RS25455at 26.868 kb on + strand, within LU632_RS25455at 26.869 kb on - strand, within LU632_RS25455at 27.085 kb on + strandat 27.312 kb on + strandat 27.421 kb on + strand, within LU632_RS25460at 27.421 kb on + strand, within LU632_RS25460at 27.442 kb on + strand, within LU632_RS25460at 27.443 kb on - strand, within LU632_RS25460at 27.447 kb on - strand, within LU632_RS25460at 27.513 kb on - strand, within LU632_RS25460at 27.513 kb on - strand, within LU632_RS25460at 27.520 kb on + strand, within LU632_RS25460at 27.521 kb on - strand, within LU632_RS25460at 27.521 kb on - strand, within LU632_RS25460at 27.521 kb on - strand, within LU632_RS25460at 27.722 kb on + strand, within LU632_RS25460at 27.764 kb on + strand, within LU632_RS25460at 27.764 kb on + strand, within LU632_RS25460at 27.768 kb on - strand, within LU632_RS25460at 27.792 kb on - strand, within LU632_RS25460at 27.854 kb on + strand, within LU632_RS25460at 27.854 kb on + strand, within LU632_RS25460at 27.941 kb on + strand, within LU632_RS25460at 27.955 kb on + strand, within LU632_RS25460at 27.955 kb on + strand, within LU632_RS25460at 27.955 kb on + strand, within LU632_RS25460at 27.956 kb on - strand, within LU632_RS25460at 28.077 kb on - strandat 28.077 kb on - strandat 28.083 kb on + strandat 28.083 kb on + strandat 28.084 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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25,802 + LU632_RS25445 0.82 +0.4
26,087 + -1.1
26,115 + +0.1
26,195 + LU632_RS25450 0.12 -1.0
26,221 + LU632_RS25450 0.20 +2.4
26,221 + LU632_RS25450 0.20 -0.9
26,281 - LU632_RS25450 0.37 -0.1
26,395 + LU632_RS25450 0.70 -0.6
26,492 - -0.3
26,535 + -0.1
26,536 - -0.4
26,653 + +0.2
26,656 - -0.3
26,714 - +0.3
26,730 - -0.3
26,796 + -0.4
26,797 - -0.4
26,820 + LU632_RS25455 0.14 +1.2
26,868 + LU632_RS25455 0.29 -0.4
26,869 - LU632_RS25455 0.30 +0.8
27,085 + -0.2
27,312 + -0.1
27,421 + LU632_RS25460 0.19 -0.2
27,421 + LU632_RS25460 0.19 +0.7
27,442 + LU632_RS25460 0.22 +0.0
27,443 - LU632_RS25460 0.22 +0.1
27,447 - LU632_RS25460 0.22 +0.2
27,513 - LU632_RS25460 0.30 -0.2
27,513 - LU632_RS25460 0.30 +0.3
27,520 + LU632_RS25460 0.31 +0.1
27,521 - LU632_RS25460 0.31 -0.5
27,521 - LU632_RS25460 0.31 +0.1
27,521 - LU632_RS25460 0.31 +0.6
27,722 + LU632_RS25460 0.55 +0.4
27,764 + LU632_RS25460 0.60 -0.1
27,764 + LU632_RS25460 0.60 -2.3
27,768 - LU632_RS25460 0.61 -1.7
27,792 - LU632_RS25460 0.64 -1.0
27,854 + LU632_RS25460 0.71 -0.1
27,854 + LU632_RS25460 0.71 +0.4
27,941 + LU632_RS25460 0.82 +0.0
27,955 + LU632_RS25460 0.83 +1.3
27,955 + LU632_RS25460 0.83 +0.9
27,955 + LU632_RS25460 0.83 +1.1
27,956 - LU632_RS25460 0.83 +0.1
28,077 - -0.7
28,077 - +0.1
28,083 + +0.3
28,083 + -0.0
28,084 - +0.9

Or see this region's nucleotide sequence