Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25345

Experiment: HBM-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS25335 and LU632_RS25340 are separated by 7 nucleotidesLU632_RS25340 and LU632_RS25345 are separated by 100 nucleotidesLU632_RS25345 and LU632_RS25350 are separated by 15 nucleotidesLU632_RS25350 and LU632_RS25355 are separated by 60 nucleotides LU632_RS25335: LU632_RS25335 - hypothetical protein, at 782 to 3,604 _RS25335 LU632_RS25340: LU632_RS25340 - hypothetical protein, at 3,612 to 4,055 _RS25340 LU632_RS25345: LU632_RS25345 - DotI/IcmL family type IV secretion protein, at 4,156 to 4,776 _RS25345 LU632_RS25350: LU632_RS25350 - hypothetical protein, at 4,792 to 5,073 _RS25350 LU632_RS25355: LU632_RS25355 - DotH/IcmK family type IV secretion protein, at 5,134 to 5,799 _RS25355 Position (kb) 4 5Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3.276 kb on + strand, within LU632_RS25335at 3.617 kb on + strandat 3.708 kb on - strand, within LU632_RS25340at 3.721 kb on - strand, within LU632_RS25340at 3.804 kb on - strand, within LU632_RS25340at 3.906 kb on + strand, within LU632_RS25340at 3.907 kb on - strand, within LU632_RS25340at 3.907 kb on - strand, within LU632_RS25340at 3.940 kb on - strand, within LU632_RS25340at 4.023 kb on - strandat 4.038 kb on + strandat 4.038 kb on + strandat 4.038 kb on + strandat 4.038 kb on + strandat 4.038 kb on + strandat 4.039 kb on - strandat 4.039 kb on - strandat 4.039 kb on - strandat 4.039 kb on - strandat 4.135 kb on + strandat 4.136 kb on - strandat 4.136 kb on - strandat 4.200 kb on + strandat 4.300 kb on + strand, within LU632_RS25345at 4.443 kb on - strand, within LU632_RS25345at 4.443 kb on - strand, within LU632_RS25345at 4.487 kb on - strand, within LU632_RS25345at 4.487 kb on - strand, within LU632_RS25345at 4.489 kb on + strand, within LU632_RS25345at 4.490 kb on - strand, within LU632_RS25345at 4.490 kb on - strand, within LU632_RS25345at 4.490 kb on - strand, within LU632_RS25345at 4.612 kb on + strand, within LU632_RS25345at 4.612 kb on + strand, within LU632_RS25345at 4.612 kb on + strand, within LU632_RS25345at 4.612 kb on + strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.614 kb on + strand, within LU632_RS25345at 4.614 kb on + strand, within LU632_RS25345at 4.614 kb on + strand, within LU632_RS25345at 4.615 kb on - strand, within LU632_RS25345at 4.692 kb on + strand, within LU632_RS25345at 4.977 kb on + strand, within LU632_RS25350at 4.988 kb on + strand, within LU632_RS25350at 5.272 kb on + strand, within LU632_RS25355at 5.272 kb on + strand, within LU632_RS25355at 5.275 kb on - strand, within LU632_RS25355at 5.275 kb on - strand, within LU632_RS25355at 5.578 kb on - strand, within LU632_RS25355at 5.650 kb on + strand, within LU632_RS25355at 5.650 kb on + strand, within LU632_RS25355at 5.650 kb on + strand, within LU632_RS25355at 5.650 kb on + strand, within LU632_RS25355at 5.650 kb on + strand, within LU632_RS25355at 5.650 kb on + strand, within LU632_RS25355at 5.651 kb on - strand, within LU632_RS25355at 5.651 kb on - strand, within LU632_RS25355at 5.722 kb on + strand, within LU632_RS25355at 5.722 kb on + strand, within LU632_RS25355at 5.723 kb on - strand, within LU632_RS25355at 5.723 kb on - strand, within LU632_RS25355

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
remove
3,276 + LU632_RS25335 0.88 -0.2
3,617 + -0.4
3,708 - LU632_RS25340 0.22 -0.1
3,721 - LU632_RS25340 0.25 -1.5
3,804 - LU632_RS25340 0.43 +0.0
3,906 + LU632_RS25340 0.66 -0.6
3,907 - LU632_RS25340 0.66 +0.7
3,907 - LU632_RS25340 0.66 -0.0
3,940 - LU632_RS25340 0.74 -0.1
4,023 - +0.4
4,038 + -0.6
4,038 + -0.1
4,038 + +1.2
4,038 + -2.4
4,038 + -0.3
4,039 - -0.6
4,039 - +0.1
4,039 - +0.1
4,039 - +0.0
4,135 + +3.0
4,136 - -0.3
4,136 - -0.5
4,200 + -0.4
4,300 + LU632_RS25345 0.23 +1.2
4,443 - LU632_RS25345 0.46 +0.5
4,443 - LU632_RS25345 0.46 +0.7
4,487 - LU632_RS25345 0.53 -0.4
4,487 - LU632_RS25345 0.53 +0.2
4,489 + LU632_RS25345 0.54 -0.7
4,490 - LU632_RS25345 0.54 -0.9
4,490 - LU632_RS25345 0.54 +0.1
4,490 - LU632_RS25345 0.54 +0.6
4,612 + LU632_RS25345 0.73 -0.2
4,612 + LU632_RS25345 0.73 -0.4
4,612 + LU632_RS25345 0.73 -0.6
4,612 + LU632_RS25345 0.73 -0.6
4,613 - LU632_RS25345 0.74 -0.1
4,613 - LU632_RS25345 0.74 -0.1
4,613 - LU632_RS25345 0.74 +0.1
4,613 - LU632_RS25345 0.74 +0.1
4,613 - LU632_RS25345 0.74 +0.1
4,613 - LU632_RS25345 0.74 -0.1
4,613 - LU632_RS25345 0.74 +0.1
4,613 - LU632_RS25345 0.74 -0.1
4,614 + LU632_RS25345 0.74 -0.8
4,614 + LU632_RS25345 0.74 -0.7
4,614 + LU632_RS25345 0.74 -0.6
4,615 - LU632_RS25345 0.74 -0.1
4,692 + LU632_RS25345 0.86 -0.6
4,977 + LU632_RS25350 0.66 +0.2
4,988 + LU632_RS25350 0.70 +0.5
5,272 + LU632_RS25355 0.21 -0.5
5,272 + LU632_RS25355 0.21 +0.7
5,275 - LU632_RS25355 0.21 -0.6
5,275 - LU632_RS25355 0.21 +0.4
5,578 - LU632_RS25355 0.67 -0.2
5,650 + LU632_RS25355 0.77 +0.3
5,650 + LU632_RS25355 0.77 +0.4
5,650 + LU632_RS25355 0.77 -0.1
5,650 + LU632_RS25355 0.77 -0.3
5,650 + LU632_RS25355 0.77 -0.0
5,650 + LU632_RS25355 0.77 -2.1
5,651 - LU632_RS25355 0.78 +0.2
5,651 - LU632_RS25355 0.78 -0.1
5,722 + LU632_RS25355 0.88 +0.5
5,722 + LU632_RS25355 0.88 +0.1
5,723 - LU632_RS25355 0.88 +0.2
5,723 - LU632_RS25355 0.88 +1.0

Or see this region's nucleotide sequence