Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24215 and wzxE overlap by 4 nucleotides wzxE and rffA are separated by 1 nucleotides
LU632_RS24215: LU632_RS24215 - TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase, at 4,617,796 to 4,618,863
_RS24215
LU632_RS24220: wzxE - lipid III flippase WzxE, at 4,618,860 to 4,620,110
wzxE
LU632_RS24225: rffA - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 4,620,112 to 4,621,242
rffA
Position (kb) 4618
4619
4620
4621 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4617.947 kb on - strand, within LU632_RS24215 at 4618.103 kb on - strand, within LU632_RS24215 at 4618.103 kb on - strand, within LU632_RS24215 at 4618.160 kb on - strand, within LU632_RS24215 at 4618.191 kb on + strand, within LU632_RS24215 at 4618.191 kb on + strand, within LU632_RS24215 at 4618.193 kb on + strand, within LU632_RS24215 at 4618.193 kb on + strand, within LU632_RS24215 at 4618.193 kb on + strand, within LU632_RS24215 at 4618.194 kb on - strand, within LU632_RS24215 at 4618.194 kb on - strand, within LU632_RS24215 at 4618.282 kb on - strand, within LU632_RS24215 at 4618.369 kb on - strand, within LU632_RS24215 at 4618.387 kb on + strand, within LU632_RS24215 at 4618.487 kb on - strand, within LU632_RS24215 at 4618.491 kb on - strand, within LU632_RS24215 at 4618.608 kb on + strand, within LU632_RS24215 at 4618.818 kb on + strand at 4618.864 kb on - strand at 4618.864 kb on - strand at 4618.918 kb on + strand at 4618.918 kb on + strand at 4618.918 kb on + strand at 4618.918 kb on + strand at 4618.918 kb on + strand at 4618.919 kb on + strand at 4618.919 kb on - strand at 4618.930 kb on + strand at 4618.930 kb on + strand at 4618.931 kb on - strand at 4618.931 kb on - strand at 4618.931 kb on - strand at 4619.024 kb on - strand, within wzxE at 4619.024 kb on - strand, within wzxE at 4619.068 kb on + strand, within wzxE at 4619.077 kb on - strand, within wzxE at 4619.307 kb on - strand, within wzxE at 4619.309 kb on + strand, within wzxE at 4619.310 kb on - strand, within wzxE at 4619.334 kb on - strand, within wzxE at 4619.433 kb on - strand, within wzxE at 4619.534 kb on + strand, within wzxE at 4619.695 kb on - strand, within wzxE at 4619.695 kb on - strand, within wzxE at 4619.750 kb on + strand, within wzxE at 4619.750 kb on + strand, within wzxE at 4619.792 kb on + strand, within wzxE at 4619.853 kb on + strand, within wzxE at 4619.853 kb on + strand, within wzxE at 4619.883 kb on + strand, within wzxE at 4619.918 kb on - strand, within wzxE at 4619.918 kb on - strand, within wzxE at 4619.974 kb on - strand, within wzxE at 4620.174 kb on - strand at 4620.281 kb on + strand, within rffA at 4620.281 kb on + strand, within rffA at 4620.281 kb on + strand, within rffA at 4620.281 kb on + strand, within rffA at 4620.282 kb on - strand, within rffA at 4620.282 kb on - strand, within rffA at 4620.282 kb on - strand, within rffA at 4620.322 kb on - strand, within rffA at 4620.369 kb on + strand, within rffA at 4620.369 kb on + strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.412 kb on + strand, within rffA at 4620.452 kb on + strand, within rffA at 4620.452 kb on + strand, within rffA at 4620.453 kb on - strand, within rffA at 4620.518 kb on + strand, within rffA at 4620.518 kb on + strand, within rffA at 4620.545 kb on + strand, within rffA at 4620.546 kb on - strand, within rffA at 4620.572 kb on + strand, within rffA at 4620.572 kb on + strand, within rffA at 4620.572 kb on + strand, within rffA at 4620.573 kb on - strand, within rffA at 4620.573 kb on - strand, within rffA at 4620.576 kb on + strand, within rffA at 4620.577 kb on - strand, within rffA at 4620.577 kb on - strand, within rffA at 4620.693 kb on + strand, within rffA at 4620.693 kb on + strand, within rffA at 4620.696 kb on - strand, within rffA at 4620.761 kb on + strand, within rffA at 4620.809 kb on + strand, within rffA at 4620.810 kb on - strand, within rffA at 4620.810 kb on - strand, within rffA at 4620.902 kb on - strand, within rffA at 4620.976 kb on + strand, within rffA at 4620.976 kb on + strand, within rffA at 4621.005 kb on + strand, within rffA at 4621.005 kb on + strand, within rffA at 4621.007 kb on + strand, within rffA at 4621.008 kb on - strand, within rffA at 4621.102 kb on - strand, within rffA
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 4,617,947 - LU632_RS24215 0.14 -1.9 4,618,103 - LU632_RS24215 0.29 +0.0 4,618,103 - LU632_RS24215 0.29 -0.9 4,618,160 - LU632_RS24215 0.34 -0.2 4,618,191 + LU632_RS24215 0.37 +0.7 4,618,191 + LU632_RS24215 0.37 -0.8 4,618,193 + LU632_RS24215 0.37 -0.4 4,618,193 + LU632_RS24215 0.37 -0.1 4,618,193 + LU632_RS24215 0.37 +0.2 4,618,194 - LU632_RS24215 0.37 +0.0 4,618,194 - LU632_RS24215 0.37 -0.0 4,618,282 - LU632_RS24215 0.46 +0.2 4,618,369 - LU632_RS24215 0.54 +0.5 4,618,387 + LU632_RS24215 0.55 +0.8 4,618,487 - LU632_RS24215 0.65 -0.3 4,618,491 - LU632_RS24215 0.65 +0.1 4,618,608 + LU632_RS24215 0.76 -0.1 4,618,818 + -0.9 4,618,864 - +0.7 4,618,864 - +0.0 4,618,918 + -1.5 4,618,918 + -0.3 4,618,918 + -0.4 4,618,918 + -1.0 4,618,918 + +0.2 4,618,919 + +0.9 4,618,919 - -0.8 4,618,930 + -0.3 4,618,930 + -0.3 4,618,931 - -0.1 4,618,931 - -0.1 4,618,931 - -0.4 4,619,024 - wzxE LU632_RS24220 0.13 -0.2 4,619,024 - wzxE LU632_RS24220 0.13 -0.7 4,619,068 + wzxE LU632_RS24220 0.17 -1.6 4,619,077 - wzxE LU632_RS24220 0.17 -0.6 4,619,307 - wzxE LU632_RS24220 0.36 -0.8 4,619,309 + wzxE LU632_RS24220 0.36 -0.1 4,619,310 - wzxE LU632_RS24220 0.36 -1.7 4,619,334 - wzxE LU632_RS24220 0.38 -0.1 4,619,433 - wzxE LU632_RS24220 0.46 +0.8 4,619,534 + wzxE LU632_RS24220 0.54 -0.6 4,619,695 - wzxE LU632_RS24220 0.67 -0.9 4,619,695 - wzxE LU632_RS24220 0.67 -0.5 4,619,750 + wzxE LU632_RS24220 0.71 -0.1 4,619,750 + wzxE LU632_RS24220 0.71 +1.6 4,619,792 + wzxE LU632_RS24220 0.75 +1.1 4,619,853 + wzxE LU632_RS24220 0.79 -0.4 4,619,853 + wzxE LU632_RS24220 0.79 -0.4 4,619,883 + wzxE LU632_RS24220 0.82 -0.8 4,619,918 - wzxE LU632_RS24220 0.85 -0.1 4,619,918 - wzxE LU632_RS24220 0.85 -1.0 4,619,974 - wzxE LU632_RS24220 0.89 -0.6 4,620,174 - -0.0 4,620,281 + rffA LU632_RS24225 0.15 +1.1 4,620,281 + rffA LU632_RS24225 0.15 -1.2 4,620,281 + rffA LU632_RS24225 0.15 -1.0 4,620,281 + rffA LU632_RS24225 0.15 +0.1 4,620,282 - rffA LU632_RS24225 0.15 -2.0 4,620,282 - rffA LU632_RS24225 0.15 -0.6 4,620,282 - rffA LU632_RS24225 0.15 +0.2 4,620,322 - rffA LU632_RS24225 0.19 -0.0 4,620,369 + rffA LU632_RS24225 0.23 +2.1 4,620,369 + rffA LU632_RS24225 0.23 -0.1 4,620,370 - rffA LU632_RS24225 0.23 -1.0 4,620,370 - rffA LU632_RS24225 0.23 +0.4 4,620,370 - rffA LU632_RS24225 0.23 -0.2 4,620,370 - rffA LU632_RS24225 0.23 +0.3 4,620,412 + rffA LU632_RS24225 0.27 -0.3 4,620,452 + rffA LU632_RS24225 0.30 +0.4 4,620,452 + rffA LU632_RS24225 0.30 +0.4 4,620,453 - rffA LU632_RS24225 0.30 -2.0 4,620,518 + rffA LU632_RS24225 0.36 -0.5 4,620,518 + rffA LU632_RS24225 0.36 -0.7 4,620,545 + rffA LU632_RS24225 0.38 -0.5 4,620,546 - rffA LU632_RS24225 0.38 +0.1 4,620,572 + rffA LU632_RS24225 0.41 +0.1 4,620,572 + rffA LU632_RS24225 0.41 +1.6 4,620,572 + rffA LU632_RS24225 0.41 +1.6 4,620,573 - rffA LU632_RS24225 0.41 +0.3 4,620,573 - rffA LU632_RS24225 0.41 -0.3 4,620,576 + rffA LU632_RS24225 0.41 -1.6 4,620,577 - rffA LU632_RS24225 0.41 -0.2 4,620,577 - rffA LU632_RS24225 0.41 -0.3 4,620,693 + rffA LU632_RS24225 0.51 +0.1 4,620,693 + rffA LU632_RS24225 0.51 -0.4 4,620,696 - rffA LU632_RS24225 0.52 -0.0 4,620,761 + rffA LU632_RS24225 0.57 -0.3 4,620,809 + rffA LU632_RS24225 0.62 -0.3 4,620,810 - rffA LU632_RS24225 0.62 +0.0 4,620,810 - rffA LU632_RS24225 0.62 -0.9 4,620,902 - rffA LU632_RS24225 0.70 -0.6 4,620,976 + rffA LU632_RS24225 0.76 -0.9 4,620,976 + rffA LU632_RS24225 0.76 +0.7 4,621,005 + rffA LU632_RS24225 0.79 +0.5 4,621,005 + rffA LU632_RS24225 0.79 -0.4 4,621,007 + rffA LU632_RS24225 0.79 -0.1 4,621,008 - rffA LU632_RS24225 0.79 -0.4 4,621,102 - rffA LU632_RS24225 0.88 -0.3
Or see this region's nucleotide sequence