Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23395 and LU632_RS23400 are separated by 84 nucleotides LU632_RS23400 and LU632_RS23405 are separated by 488 nucleotides LU632_RS23405 and LU632_RS23410 are separated by 506 nucleotides
LU632_RS23395: LU632_RS23395 - IS91 family transposase, at 4,458,899 to 4,460,122
_RS23395
LU632_RS23400: LU632_RS23400 - transposase, at 4,460,207 to 4,460,473
_RS23400
LU632_RS23405: LU632_RS23405 - IS6 family transposase, at 4,460,962 to 4,461,658
_RS23405
LU632_RS23410: LU632_RS23410 - hypothetical protein, at 4,462,165 to 4,466,793
_RS23410
Position (kb)
4460
4461
4462 Strain fitness (log2 ratio)
-1
0
1
2 at 4460.692 kb on - strand at 4460.722 kb on - strand at 4460.793 kb on - strand at 4460.824 kb on - strand at 4460.824 kb on - strand at 4460.864 kb on - strand at 4460.866 kb on - strand at 4460.866 kb on - strand at 4460.871 kb on + strand at 4461.235 kb on + strand, within LU632_RS23405 at 4461.734 kb on + strand at 4461.734 kb on + strand at 4461.735 kb on - strand at 4461.829 kb on + strand at 4461.972 kb on + strand at 4461.972 kb on - strand at 4461.973 kb on - strand at 4461.973 kb on - strand at 4462.011 kb on - strand at 4462.011 kb on - strand at 4462.034 kb on - strand at 4462.083 kb on + strand at 4462.084 kb on - strand at 4462.134 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 4,460,692 - +0.7 4,460,722 - +1.0 4,460,793 - +0.1 4,460,824 - -0.5 4,460,824 - +0.2 4,460,864 - -0.4 4,460,866 - +0.1 4,460,866 - -0.0 4,460,871 + +0.9 4,461,235 + LU632_RS23405 0.39 -0.0 4,461,734 + +0.4 4,461,734 + -0.5 4,461,735 - +0.2 4,461,829 + -0.1 4,461,972 + +1.5 4,461,972 - +2.1 4,461,973 - -0.3 4,461,973 - -0.2 4,462,011 - -0.2 4,462,011 - +0.8 4,462,034 - +0.9 4,462,083 + -0.5 4,462,084 - +0.4 4,462,134 - +0.5
Or see this region's nucleotide sequence