Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22120 and LU632_RS22125 are separated by 143 nucleotides LU632_RS22125 and LU632_RS22130 are separated by 327 nucleotides LU632_RS22130 and glnG are separated by 100 nucleotides glnG and glnL are separated by 7 nucleotides
LU632_RS22120: LU632_RS22120 - ABC transporter substrate-binding protein, at 4,224,936 to 4,226,564
_RS22120
LU632_RS22125: LU632_RS22125 - hypothetical protein, at 4,226,708 to 4,226,917
_RS22125
LU632_RS22130: LU632_RS22130 - YshB family small membrane protein, at 4,227,245 to 4,227,358
_RS22130
LU632_RS22135: glnG - nitrogen regulation protein NR(I), at 4,227,459 to 4,228,868
glnG
LU632_RS22140: glnL - nitrogen regulation protein NR(II), at 4,228,876 to 4,229,925
glnL
Position (kb) 4227
4228
4229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4226.474 kb on - strand at 4226.535 kb on + strand at 4226.536 kb on - strand at 4226.550 kb on + strand at 4226.562 kb on + strand at 4226.599 kb on + strand at 4226.600 kb on - strand at 4226.600 kb on - strand at 4226.603 kb on + strand at 4226.603 kb on + strand at 4226.604 kb on - strand at 4226.604 kb on - strand at 4226.647 kb on - strand at 4226.998 kb on + strand at 4226.998 kb on + strand at 4226.998 kb on + strand at 4226.999 kb on - strand at 4227.003 kb on + strand at 4227.003 kb on + strand at 4227.003 kb on + strand at 4227.108 kb on - strand at 4227.115 kb on + strand at 4227.116 kb on - strand at 4227.116 kb on - strand at 4227.116 kb on - strand at 4227.116 kb on - strand at 4227.202 kb on + strand at 4227.203 kb on - strand at 4227.203 kb on - strand at 4227.203 kb on - strand at 4227.277 kb on + strand, within LU632_RS22130 at 4227.277 kb on + strand, within LU632_RS22130 at 4227.277 kb on + strand, within LU632_RS22130 at 4227.277 kb on + strand, within LU632_RS22130 at 4227.277 kb on + strand, within LU632_RS22130 at 4227.277 kb on + strand, within LU632_RS22130 at 4227.278 kb on - strand, within LU632_RS22130 at 4227.278 kb on - strand, within LU632_RS22130 at 4227.359 kb on - strand at 4227.359 kb on - strand at 4227.359 kb on - strand at 4227.361 kb on + strand at 4227.361 kb on + strand at 4227.362 kb on - strand at 4227.363 kb on + strand at 4227.363 kb on + strand at 4227.363 kb on + strand at 4227.363 kb on + strand at 4227.364 kb on - strand at 4227.364 kb on - strand at 4227.498 kb on - strand at 4227.566 kb on + strand at 4227.567 kb on - strand at 4227.567 kb on - strand at 4227.567 kb on - strand at 4227.570 kb on + strand at 4227.570 kb on + strand at 4227.571 kb on - strand at 4227.571 kb on - strand at 4227.575 kb on + strand at 4227.575 kb on + strand at 4227.576 kb on - strand at 4227.576 kb on - strand at 4227.576 kb on - strand at 4227.576 kb on - strand at 4227.576 kb on - strand at 4227.735 kb on + strand, within glnG at 4227.736 kb on - strand, within glnG at 4227.782 kb on + strand, within glnG at 4227.917 kb on + strand, within glnG at 4227.966 kb on + strand, within glnG at 4228.032 kb on - strand, within glnG at 4228.201 kb on - strand, within glnG at 4228.280 kb on + strand, within glnG at 4228.341 kb on + strand, within glnG at 4228.378 kb on - strand, within glnG at 4228.449 kb on - strand, within glnG at 4228.568 kb on - strand, within glnG at 4228.628 kb on + strand, within glnG at 4228.670 kb on + strand, within glnG at 4228.671 kb on - strand, within glnG at 4228.888 kb on - strand at 4228.936 kb on + strand at 4229.022 kb on - strand, within glnL at 4229.039 kb on - strand, within glnL at 4229.145 kb on + strand, within glnL at 4229.145 kb on + strand, within glnL at 4229.145 kb on + strand, within glnL at 4229.332 kb on - strand, within glnL at 4229.427 kb on - strand, within glnL at 4229.427 kb on - strand, within glnL at 4229.553 kb on + strand, within glnL at 4229.553 kb on + strand, within glnL at 4229.554 kb on - strand, within glnL at 4229.554 kb on - strand, within glnL at 4229.618 kb on - strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.653 kb on - strand, within glnL at 4229.653 kb on - strand, within glnL at 4229.739 kb on + strand, within glnL at 4229.739 kb on + strand, within glnL at 4229.740 kb on - strand, within glnL at 4229.867 kb on - strand at 4229.868 kb on + strand at 4229.868 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 4,226,474 - -0.1 4,226,535 + +0.5 4,226,536 - -0.2 4,226,550 + +2.1 4,226,562 + +0.4 4,226,599 + +1.1 4,226,600 - -0.4 4,226,600 - -0.5 4,226,603 + +0.3 4,226,603 + -0.4 4,226,604 - -1.2 4,226,604 - -0.7 4,226,647 - +0.1 4,226,998 + +0.3 4,226,998 + -0.1 4,226,998 + +0.1 4,226,999 - -0.5 4,227,003 + +0.2 4,227,003 + +0.1 4,227,003 + -0.3 4,227,108 - +0.3 4,227,115 + +0.2 4,227,116 - -0.0 4,227,116 - +0.3 4,227,116 - +0.0 4,227,116 - -0.1 4,227,202 + -0.6 4,227,203 - +0.9 4,227,203 - -1.1 4,227,203 - +0.1 4,227,277 + LU632_RS22130 0.28 +0.1 4,227,277 + LU632_RS22130 0.28 +1.1 4,227,277 + LU632_RS22130 0.28 +0.7 4,227,277 + LU632_RS22130 0.28 +0.7 4,227,277 + LU632_RS22130 0.28 +0.4 4,227,277 + LU632_RS22130 0.28 +0.1 4,227,278 - LU632_RS22130 0.29 -0.9 4,227,278 - LU632_RS22130 0.29 -1.3 4,227,359 - +0.2 4,227,359 - -0.5 4,227,359 - +0.3 4,227,361 + -0.4 4,227,361 + +0.1 4,227,362 - +0.7 4,227,363 + -0.7 4,227,363 + +0.6 4,227,363 + -0.7 4,227,363 + +0.7 4,227,364 - -0.4 4,227,364 - -0.5 4,227,498 - -1.3 4,227,566 + -0.3 4,227,567 - -1.5 4,227,567 - -1.9 4,227,567 - -1.2 4,227,570 + -0.9 4,227,570 + -1.8 4,227,571 - -1.4 4,227,571 - -1.6 4,227,575 + -0.9 4,227,575 + -1.7 4,227,576 - -1.0 4,227,576 - -1.4 4,227,576 - -2.8 4,227,576 - -1.1 4,227,576 - -1.7 4,227,735 + glnG LU632_RS22135 0.20 -2.6 4,227,736 - glnG LU632_RS22135 0.20 -1.5 4,227,782 + glnG LU632_RS22135 0.23 -1.2 4,227,917 + glnG LU632_RS22135 0.32 -2.8 4,227,966 + glnG LU632_RS22135 0.36 -1.9 4,228,032 - glnG LU632_RS22135 0.41 -1.5 4,228,201 - glnG LU632_RS22135 0.53 -0.7 4,228,280 + glnG LU632_RS22135 0.58 -2.9 4,228,341 + glnG LU632_RS22135 0.63 -2.0 4,228,378 - glnG LU632_RS22135 0.65 +0.5 4,228,449 - glnG LU632_RS22135 0.70 -2.0 4,228,568 - glnG LU632_RS22135 0.79 -1.5 4,228,628 + glnG LU632_RS22135 0.83 -1.1 4,228,670 + glnG LU632_RS22135 0.86 -1.1 4,228,671 - glnG LU632_RS22135 0.86 -0.5 4,228,888 - +0.3 4,228,936 + -0.5 4,229,022 - glnL LU632_RS22140 0.14 -2.8 4,229,039 - glnL LU632_RS22140 0.16 -1.6 4,229,145 + glnL LU632_RS22140 0.26 -2.2 4,229,145 + glnL LU632_RS22140 0.26 -2.0 4,229,145 + glnL LU632_RS22140 0.26 -0.9 4,229,332 - glnL LU632_RS22140 0.43 -3.6 4,229,427 - glnL LU632_RS22140 0.52 -2.1 4,229,427 - glnL LU632_RS22140 0.52 -2.1 4,229,553 + glnL LU632_RS22140 0.64 -2.2 4,229,553 + glnL LU632_RS22140 0.64 -2.8 4,229,554 - glnL LU632_RS22140 0.65 -1.5 4,229,554 - glnL LU632_RS22140 0.65 -2.4 4,229,618 - glnL LU632_RS22140 0.71 -1.5 4,229,652 + glnL LU632_RS22140 0.74 -2.5 4,229,652 + glnL LU632_RS22140 0.74 -1.3 4,229,652 + glnL LU632_RS22140 0.74 -0.5 4,229,652 + glnL LU632_RS22140 0.74 -2.6 4,229,652 + glnL LU632_RS22140 0.74 -2.1 4,229,653 - glnL LU632_RS22140 0.74 -2.3 4,229,653 - glnL LU632_RS22140 0.74 -1.3 4,229,739 + glnL LU632_RS22140 0.82 -2.6 4,229,739 + glnL LU632_RS22140 0.82 -0.5 4,229,740 - glnL LU632_RS22140 0.82 -1.9 4,229,867 - -2.6 4,229,868 + -1.8 4,229,868 + -2.4
Or see this region's nucleotide sequence