Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21010 and LU632_RS21015 are separated by 71 nucleotides LU632_RS21015 and LU632_RS21020 overlap by 78 nucleotides LU632_RS21020 and tnpA are separated by 97 nucleotides tnpA and LU632_RS21030 are separated by 252 nucleotides
LU632_RS21010: LU632_RS21010 - U32 family peptidase, at 4,014,566 to 4,015,459
_RS21010
LU632_RS21015: LU632_RS21015 - IS5 family transposase, at 4,015,531 to 4,016,041
_RS21015
LU632_RS21020: LU632_RS21020 - IS110 family transposase, at 4,015,964 to 4,017,026
_RS21020
LU632_RS21025: tnpA - IS200/IS605 family transposase, at 4,017,124 to 4,017,561
tnpA
LU632_RS21030: LU632_RS21030 - DEAD/DEAH family ATP-dependent RNA helicase, at 4,017,814 to 4,019,673
_RS21030
Position (kb)
4015
4016
4017
4018 Strain fitness (log2 ratio)
-1
0
1 at 4015.036 kb on + strand, within LU632_RS21010 at 4015.080 kb on + strand, within LU632_RS21010 at 4015.156 kb on + strand, within LU632_RS21010 at 4015.352 kb on - strand, within LU632_RS21010 at 4015.417 kb on + strand at 4015.418 kb on - strand at 4015.418 kb on - strand at 4015.471 kb on - strand at 4015.471 kb on - strand at 4017.061 kb on - strand at 4017.744 kb on + strand at 4017.767 kb on + strand at 4017.790 kb on - strand at 4017.793 kb on - strand at 4017.793 kb on - strand at 4017.795 kb on + strand at 4017.795 kb on + strand at 4017.795 kb on + strand at 4017.815 kb on + strand at 4017.815 kb on + strand at 4017.816 kb on - strand at 4017.816 kb on - strand at 4017.816 kb on - strand at 4017.816 kb on - strand at 4017.816 kb on - strand at 4017.816 kb on - strand at 4017.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 4,015,036 + LU632_RS21010 0.53 +0.7 4,015,080 + LU632_RS21010 0.57 -0.1 4,015,156 + LU632_RS21010 0.66 +0.4 4,015,352 - LU632_RS21010 0.88 +0.0 4,015,417 + -0.6 4,015,418 - -0.4 4,015,418 - +0.2 4,015,471 - +0.1 4,015,471 - -1.3 4,017,061 - +0.2 4,017,744 + +0.1 4,017,767 + -0.1 4,017,790 - +0.4 4,017,793 - -0.3 4,017,793 - +0.2 4,017,795 + -0.9 4,017,795 + -0.6 4,017,795 + -0.9 4,017,815 + +0.0 4,017,815 + -0.2 4,017,816 - +0.0 4,017,816 - -0.6 4,017,816 - +1.0 4,017,816 - +1.2 4,017,816 - -0.3 4,017,816 - +0.6 4,017,816 - +1.6
Or see this region's nucleotide sequence