Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18730

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS18725 and LU632_RS18730 overlap by 10 nucleotidesLU632_RS18730 and LU632_RS18735 overlap by 1 nucleotidesLU632_RS18735 and LU632_RS18740 are separated by 1 nucleotidesLU632_RS18740 and LU632_RS18745 are separated by 2 nucleotides LU632_RS18725: LU632_RS18725 - DUF935 domain-containing protein, at 3,537,743 to 3,539,326 _RS18725 LU632_RS18730: LU632_RS18730 - hypothetical protein, at 3,539,317 to 3,540,879 _RS18730 LU632_RS18735: LU632_RS18735 - DUF3486 family protein, at 3,540,879 to 3,541,451 _RS18735 LU632_RS18740: LU632_RS18740 - hypothetical protein, at 3,541,453 to 3,541,740 _RS18740 LU632_RS18745: LU632_RS18745 - DUF2730 family protein, at 3,541,743 to 3,542,036 _RS18745 Position (kb) 3539 3540 3541Strain fitness (log2 ratio) -1 0 1at 3538.421 kb on - strand, within LU632_RS18725at 3538.421 kb on - strand, within LU632_RS18725at 3539.135 kb on + strand, within LU632_RS18725at 3539.579 kb on + strand, within LU632_RS18730at 3539.579 kb on + strand, within LU632_RS18730at 3539.603 kb on + strand, within LU632_RS18730at 3539.639 kb on - strand, within LU632_RS18730at 3539.758 kb on - strand, within LU632_RS18730at 3540.075 kb on + strand, within LU632_RS18730at 3540.076 kb on - strand, within LU632_RS18730at 3540.076 kb on - strand, within LU632_RS18730at 3540.076 kb on - strand, within LU632_RS18730at 3540.077 kb on + strand, within LU632_RS18730at 3540.077 kb on + strand, within LU632_RS18730at 3540.077 kb on + strand, within LU632_RS18730at 3540.078 kb on - strand, within LU632_RS18730at 3540.107 kb on + strand, within LU632_RS18730at 3540.107 kb on + strand, within LU632_RS18730at 3540.107 kb on + strand, within LU632_RS18730at 3540.107 kb on + strand, within LU632_RS18730at 3540.107 kb on + strand, within LU632_RS18730at 3540.107 kb on + strand, within LU632_RS18730at 3540.107 kb on + strand, within LU632_RS18730at 3540.108 kb on - strand, within LU632_RS18730at 3540.108 kb on - strand, within LU632_RS18730at 3540.108 kb on - strand, within LU632_RS18730at 3540.108 kb on - strand, within LU632_RS18730at 3540.108 kb on - strand, within LU632_RS18730at 3540.110 kb on + strand, within LU632_RS18730at 3540.110 kb on + strand, within LU632_RS18730at 3540.111 kb on - strand, within LU632_RS18730at 3540.343 kb on - strand, within LU632_RS18730at 3540.346 kb on - strand, within LU632_RS18730

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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3,538,421 - LU632_RS18725 0.43 +0.1
3,538,421 - LU632_RS18725 0.43 +0.0
3,539,135 + LU632_RS18725 0.88 -0.1
3,539,579 + LU632_RS18730 0.17 +0.9
3,539,579 + LU632_RS18730 0.17 +0.3
3,539,603 + LU632_RS18730 0.18 +0.1
3,539,639 - LU632_RS18730 0.21 -0.3
3,539,758 - LU632_RS18730 0.28 -1.1
3,540,075 + LU632_RS18730 0.48 -1.0
3,540,076 - LU632_RS18730 0.49 -0.0
3,540,076 - LU632_RS18730 0.49 +0.3
3,540,076 - LU632_RS18730 0.49 -0.2
3,540,077 + LU632_RS18730 0.49 -0.5
3,540,077 + LU632_RS18730 0.49 +0.5
3,540,077 + LU632_RS18730 0.49 +0.7
3,540,078 - LU632_RS18730 0.49 +0.2
3,540,107 + LU632_RS18730 0.51 +0.5
3,540,107 + LU632_RS18730 0.51 -0.4
3,540,107 + LU632_RS18730 0.51 -0.6
3,540,107 + LU632_RS18730 0.51 +1.1
3,540,107 + LU632_RS18730 0.51 +0.1
3,540,107 + LU632_RS18730 0.51 -0.5
3,540,107 + LU632_RS18730 0.51 +0.2
3,540,108 - LU632_RS18730 0.51 +0.2
3,540,108 - LU632_RS18730 0.51 -0.8
3,540,108 - LU632_RS18730 0.51 +0.6
3,540,108 - LU632_RS18730 0.51 +0.1
3,540,108 - LU632_RS18730 0.51 -0.2
3,540,110 + LU632_RS18730 0.51 -0.4
3,540,110 + LU632_RS18730 0.51 -0.7
3,540,111 - LU632_RS18730 0.51 -0.3
3,540,343 - LU632_RS18730 0.66 -0.2
3,540,346 - LU632_RS18730 0.66 +0.9

Or see this region's nucleotide sequence