Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS17185 and LU632_RS17190 are separated by 185 nucleotides LU632_RS17190 and LU632_RS17195 are separated by 34 nucleotides LU632_RS17195 and LU632_RS17200 are separated by 104 nucleotides
LU632_RS17185: LU632_RS17185 - RNA polymerase subunit sigma-70, at 3,234,165 to 3,234,770
_RS17185
LU632_RS17190: LU632_RS17190 - hypothetical protein, at 3,234,956 to 3,235,183
_RS17190
LU632_RS17195: LU632_RS17195 - IS481 family transposase, at 3,235,218 to 3,236,258
_RS17195
LU632_RS17200: LU632_RS17200 - phage antirepressor N-terminal domain-containing protein, at 3,236,363 to 3,237,235
_RS17200
Position (kb)
3235
3236
3237 Strain fitness (log2 ratio)
-1
0
1
2 at 3234.340 kb on + strand, within LU632_RS17185 at 3234.341 kb on - strand, within LU632_RS17185 at 3234.360 kb on + strand, within LU632_RS17185 at 3234.361 kb on - strand, within LU632_RS17185 at 3234.361 kb on - strand, within LU632_RS17185 at 3234.431 kb on - strand, within LU632_RS17185 at 3234.560 kb on + strand, within LU632_RS17185 at 3234.561 kb on - strand, within LU632_RS17185 at 3234.597 kb on - strand, within LU632_RS17185 at 3234.887 kb on + strand at 3234.888 kb on - strand at 3234.890 kb on - strand at 3234.953 kb on + strand at 3234.953 kb on + strand at 3234.953 kb on + strand at 3234.954 kb on - strand at 3234.954 kb on - strand at 3234.956 kb on - strand at 3234.974 kb on + strand at 3234.975 kb on - strand at 3236.446 kb on + strand at 3236.542 kb on - strand, within LU632_RS17200 at 3236.552 kb on - strand, within LU632_RS17200 at 3236.563 kb on + strand, within LU632_RS17200 at 3236.564 kb on - strand, within LU632_RS17200 at 3236.564 kb on - strand, within LU632_RS17200 at 3236.565 kb on + strand, within LU632_RS17200 at 3236.566 kb on - strand, within LU632_RS17200 at 3236.734 kb on + strand, within LU632_RS17200 at 3236.737 kb on + strand, within LU632_RS17200 at 3236.738 kb on - strand, within LU632_RS17200 at 3236.892 kb on + strand, within LU632_RS17200 at 3236.897 kb on + strand, within LU632_RS17200 at 3236.897 kb on + strand, within LU632_RS17200 at 3236.897 kb on + strand, within LU632_RS17200 at 3236.898 kb on - strand, within LU632_RS17200 at 3236.959 kb on + strand, within LU632_RS17200 at 3237.011 kb on - strand, within LU632_RS17200 at 3237.147 kb on + strand, within LU632_RS17200 at 3237.147 kb on + strand, within LU632_RS17200 at 3237.147 kb on + strand, within LU632_RS17200 at 3237.161 kb on - strand at 3237.174 kb on + strand at 3237.174 kb on + strand at 3237.174 kb on + strand at 3237.174 kb on + strand at 3237.175 kb on - strand at 3237.175 kb on - strand at 3237.175 kb on - strand at 3237.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 3,234,340 + LU632_RS17185 0.29 +0.5 3,234,341 - LU632_RS17185 0.29 +0.3 3,234,360 + LU632_RS17185 0.32 +1.4 3,234,361 - LU632_RS17185 0.32 +0.0 3,234,361 - LU632_RS17185 0.32 -0.3 3,234,431 - LU632_RS17185 0.44 +1.2 3,234,560 + LU632_RS17185 0.65 +1.3 3,234,561 - LU632_RS17185 0.65 +0.1 3,234,597 - LU632_RS17185 0.71 -0.3 3,234,887 + -0.2 3,234,888 - +0.2 3,234,890 - +0.7 3,234,953 + -0.2 3,234,953 + -0.1 3,234,953 + +0.4 3,234,954 - +0.3 3,234,954 - -0.3 3,234,956 - -0.2 3,234,974 + -0.1 3,234,975 - -0.9 3,236,446 + -0.0 3,236,542 - LU632_RS17200 0.21 -1.4 3,236,552 - LU632_RS17200 0.22 -0.1 3,236,563 + LU632_RS17200 0.23 +1.0 3,236,564 - LU632_RS17200 0.23 -0.0 3,236,564 - LU632_RS17200 0.23 +0.2 3,236,565 + LU632_RS17200 0.23 -0.6 3,236,566 - LU632_RS17200 0.23 +0.4 3,236,734 + LU632_RS17200 0.42 -0.3 3,236,737 + LU632_RS17200 0.43 +0.1 3,236,738 - LU632_RS17200 0.43 -0.3 3,236,892 + LU632_RS17200 0.61 -1.5 3,236,897 + LU632_RS17200 0.61 +0.8 3,236,897 + LU632_RS17200 0.61 -0.3 3,236,897 + LU632_RS17200 0.61 -0.9 3,236,898 - LU632_RS17200 0.61 +0.1 3,236,959 + LU632_RS17200 0.68 -0.2 3,237,011 - LU632_RS17200 0.74 -0.5 3,237,147 + LU632_RS17200 0.90 -0.5 3,237,147 + LU632_RS17200 0.90 +0.0 3,237,147 + LU632_RS17200 0.90 +0.7 3,237,161 - -0.2 3,237,174 + +0.5 3,237,174 + -1.1 3,237,174 + -0.7 3,237,174 + -0.4 3,237,175 - +0.5 3,237,175 - -0.9 3,237,175 - +1.8 3,237,175 - -0.1
Or see this region's nucleotide sequence