Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16035

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttolB and tolA are separated by 118 nucleotidestolA and tolR are separated by 29 nucleotidestolR and tolQ are separated by 8 nucleotides LU632_RS16030: tolB - Tol-Pal system beta propeller repeat protein TolB, at 3,028,660 to 3,029,952 tolB LU632_RS16035: tolA - cell envelope integrity protein TolA, at 3,030,071 to 3,031,222 tolA LU632_RS16040: tolR - colicin uptake protein TolR, at 3,031,252 to 3,031,680 tolR LU632_RS16045: tolQ - Tol-Pal system protein TolQ, at 3,031,689 to 3,032,372 tolQ Position (kb) 3030 3031 3032Strain fitness (log2 ratio) -1 0 1at 3029.987 kb on - strandat 3029.991 kb on - strandat 3029.991 kb on - strandat 3030.022 kb on - strandat 3030.022 kb on - strandat 3030.022 kb on - strandat 3030.022 kb on - strandat 3030.022 kb on - strandat 3031.249 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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3,029,987 - -0.6
3,029,991 - +1.3
3,029,991 - -0.2
3,030,022 - -1.0
3,030,022 - -0.6
3,030,022 - +0.4
3,030,022 - -0.4
3,030,022 - -1.4
3,031,249 - -0.3

Or see this region's nucleotide sequence