Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS10430 and flgJ overlap by 1 nucleotides flgJ and flgK are separated by 241 nucleotides
LU632_RS10430: LU632_RS10430 - flagellar basal body P-ring protein FlgI, at 1,991,112 to 1,992,209
_RS10430
LU632_RS10435: flgJ - flagellar assembly peptidoglycan hydrolase FlgJ, at 1,992,209 to 1,993,147
flgJ
LU632_RS10440: flgK - flagellar hook-associated protein FlgK, at 1,993,389 to 1,995,041
flgK
Position (kb) 1992
1993
1994 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1991.292 kb on - strand, within LU632_RS10430 at 1991.352 kb on - strand, within LU632_RS10430 at 1991.425 kb on + strand, within LU632_RS10430 at 1991.425 kb on + strand, within LU632_RS10430 at 1991.425 kb on + strand, within LU632_RS10430 at 1991.425 kb on + strand, within LU632_RS10430 at 1991.426 kb on + strand, within LU632_RS10430 at 1991.426 kb on - strand, within LU632_RS10430 at 1991.426 kb on - strand, within LU632_RS10430 at 1991.517 kb on + strand, within LU632_RS10430 at 1991.517 kb on + strand, within LU632_RS10430 at 1991.518 kb on - strand, within LU632_RS10430 at 1991.576 kb on + strand, within LU632_RS10430 at 1991.597 kb on + strand, within LU632_RS10430 at 1991.610 kb on - strand, within LU632_RS10430 at 1991.610 kb on - strand, within LU632_RS10430 at 1991.610 kb on - strand, within LU632_RS10430 at 1991.896 kb on + strand, within LU632_RS10430 at 1991.896 kb on + strand, within LU632_RS10430 at 1991.899 kb on + strand, within LU632_RS10430 at 1991.924 kb on + strand, within LU632_RS10430 at 1992.146 kb on - strand at 1992.146 kb on - strand at 1992.146 kb on - strand at 1992.155 kb on - strand at 1992.203 kb on - strand at 1992.242 kb on + strand at 1992.340 kb on - strand, within flgJ at 1992.340 kb on - strand, within flgJ at 1992.409 kb on + strand, within flgJ at 1992.409 kb on + strand, within flgJ at 1992.409 kb on + strand, within flgJ at 1992.410 kb on - strand, within flgJ at 1992.413 kb on + strand, within flgJ at 1992.413 kb on + strand, within flgJ at 1992.413 kb on + strand, within flgJ at 1992.413 kb on + strand, within flgJ at 1992.413 kb on + strand, within flgJ at 1992.413 kb on + strand, within flgJ at 1992.413 kb on + strand, within flgJ at 1992.413 kb on + strand, within flgJ at 1992.413 kb on + strand, within flgJ at 1992.413 kb on + strand, within flgJ at 1992.413 kb on + strand, within flgJ at 1992.413 kb on + strand, within flgJ at 1992.414 kb on - strand, within flgJ at 1992.414 kb on - strand, within flgJ at 1992.414 kb on - strand, within flgJ at 1992.414 kb on - strand, within flgJ at 1992.414 kb on - strand, within flgJ at 1992.414 kb on - strand, within flgJ at 1992.415 kb on + strand, within flgJ at 1992.415 kb on + strand, within flgJ at 1992.416 kb on - strand, within flgJ at 1992.416 kb on - strand, within flgJ at 1992.416 kb on - strand, within flgJ at 1992.416 kb on - strand, within flgJ at 1992.425 kb on + strand, within flgJ at 1992.425 kb on + strand, within flgJ at 1992.560 kb on - strand, within flgJ at 1992.565 kb on + strand, within flgJ at 1992.565 kb on + strand, within flgJ at 1992.661 kb on + strand, within flgJ at 1992.814 kb on + strand, within flgJ at 1992.866 kb on + strand, within flgJ at 1992.911 kb on + strand, within flgJ at 1992.911 kb on + strand, within flgJ at 1992.912 kb on - strand, within flgJ at 1992.920 kb on + strand, within flgJ at 1992.920 kb on + strand, within flgJ at 1992.921 kb on - strand, within flgJ at 1992.941 kb on + strand, within flgJ at 1993.052 kb on + strand, within flgJ at 1993.052 kb on + strand, within flgJ at 1993.053 kb on - strand, within flgJ at 1993.077 kb on + strand at 1993.118 kb on + strand at 1993.118 kb on + strand at 1993.182 kb on + strand at 1993.182 kb on + strand at 1993.183 kb on - strand at 1993.193 kb on - strand at 1993.213 kb on + strand at 1993.213 kb on + strand at 1993.214 kb on - strand at 1993.260 kb on + strand at 1993.260 kb on + strand at 1993.260 kb on + strand at 1993.394 kb on + strand at 1993.394 kb on + strand at 1993.403 kb on + strand at 1993.461 kb on - strand at 1993.469 kb on + strand at 1993.469 kb on + strand at 1993.470 kb on - strand at 1993.473 kb on + strand at 1993.546 kb on - strand at 1993.547 kb on + strand at 1993.587 kb on + strand, within flgK at 1993.679 kb on + strand, within flgK at 1993.866 kb on - strand, within flgK at 1994.061 kb on + strand, within flgK at 1994.062 kb on - strand, within flgK at 1994.063 kb on + strand, within flgK at 1994.064 kb on - strand, within flgK at 1994.064 kb on - strand, within flgK at 1994.064 kb on - strand, within flgK at 1994.109 kb on + strand, within flgK
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 1,991,292 - LU632_RS10430 0.16 +0.1 1,991,352 - LU632_RS10430 0.22 -0.2 1,991,425 + LU632_RS10430 0.29 -0.1 1,991,425 + LU632_RS10430 0.29 -0.0 1,991,425 + LU632_RS10430 0.29 -0.1 1,991,425 + LU632_RS10430 0.29 +0.2 1,991,426 + LU632_RS10430 0.29 +0.2 1,991,426 - LU632_RS10430 0.29 +0.7 1,991,426 - LU632_RS10430 0.29 +0.0 1,991,517 + LU632_RS10430 0.37 -0.1 1,991,517 + LU632_RS10430 0.37 -0.5 1,991,518 - LU632_RS10430 0.37 +0.1 1,991,576 + LU632_RS10430 0.42 -0.2 1,991,597 + LU632_RS10430 0.44 -0.1 1,991,610 - LU632_RS10430 0.45 +0.5 1,991,610 - LU632_RS10430 0.45 -0.8 1,991,610 - LU632_RS10430 0.45 +0.2 1,991,896 + LU632_RS10430 0.71 -0.2 1,991,896 + LU632_RS10430 0.71 +0.1 1,991,899 + LU632_RS10430 0.72 +1.2 1,991,924 + LU632_RS10430 0.74 -0.8 1,992,146 - +0.7 1,992,146 - -1.0 1,992,146 - +0.6 1,992,155 - +0.3 1,992,203 - +0.3 1,992,242 + +0.4 1,992,340 - flgJ LU632_RS10435 0.14 +0.0 1,992,340 - flgJ LU632_RS10435 0.14 +0.4 1,992,409 + flgJ LU632_RS10435 0.21 -0.2 1,992,409 + flgJ LU632_RS10435 0.21 +0.9 1,992,409 + flgJ LU632_RS10435 0.21 +0.9 1,992,410 - flgJ LU632_RS10435 0.21 +0.7 1,992,413 + flgJ LU632_RS10435 0.22 +0.1 1,992,413 + flgJ LU632_RS10435 0.22 -0.2 1,992,413 + flgJ LU632_RS10435 0.22 -0.3 1,992,413 + flgJ LU632_RS10435 0.22 +0.6 1,992,413 + flgJ LU632_RS10435 0.22 -0.7 1,992,413 + flgJ LU632_RS10435 0.22 -1.3 1,992,413 + flgJ LU632_RS10435 0.22 -0.1 1,992,413 + flgJ LU632_RS10435 0.22 +0.4 1,992,413 + flgJ LU632_RS10435 0.22 +0.6 1,992,413 + flgJ LU632_RS10435 0.22 +0.1 1,992,413 + flgJ LU632_RS10435 0.22 +0.1 1,992,413 + flgJ LU632_RS10435 0.22 +0.7 1,992,414 - flgJ LU632_RS10435 0.22 -0.1 1,992,414 - flgJ LU632_RS10435 0.22 +1.3 1,992,414 - flgJ LU632_RS10435 0.22 +0.2 1,992,414 - flgJ LU632_RS10435 0.22 -0.0 1,992,414 - flgJ LU632_RS10435 0.22 +0.7 1,992,414 - flgJ LU632_RS10435 0.22 -0.2 1,992,415 + flgJ LU632_RS10435 0.22 +0.1 1,992,415 + flgJ LU632_RS10435 0.22 +0.6 1,992,416 - flgJ LU632_RS10435 0.22 +1.3 1,992,416 - flgJ LU632_RS10435 0.22 -0.8 1,992,416 - flgJ LU632_RS10435 0.22 -2.1 1,992,416 - flgJ LU632_RS10435 0.22 +0.1 1,992,425 + flgJ LU632_RS10435 0.23 +0.1 1,992,425 + flgJ LU632_RS10435 0.23 +2.0 1,992,560 - flgJ LU632_RS10435 0.37 -0.1 1,992,565 + flgJ LU632_RS10435 0.38 +1.2 1,992,565 + flgJ LU632_RS10435 0.38 +1.4 1,992,661 + flgJ LU632_RS10435 0.48 -0.6 1,992,814 + flgJ LU632_RS10435 0.64 -0.3 1,992,866 + flgJ LU632_RS10435 0.70 -0.7 1,992,911 + flgJ LU632_RS10435 0.75 +0.7 1,992,911 + flgJ LU632_RS10435 0.75 +0.1 1,992,912 - flgJ LU632_RS10435 0.75 -0.7 1,992,920 + flgJ LU632_RS10435 0.76 -0.5 1,992,920 + flgJ LU632_RS10435 0.76 -0.4 1,992,921 - flgJ LU632_RS10435 0.76 +0.4 1,992,941 + flgJ LU632_RS10435 0.78 +1.1 1,993,052 + flgJ LU632_RS10435 0.90 +0.7 1,993,052 + flgJ LU632_RS10435 0.90 -0.3 1,993,053 - flgJ LU632_RS10435 0.90 +0.4 1,993,077 + +0.1 1,993,118 + +0.6 1,993,118 + -0.6 1,993,182 + +1.5 1,993,182 + -0.1 1,993,183 - +0.3 1,993,193 - -0.3 1,993,213 + +0.1 1,993,213 + +0.2 1,993,214 - +2.4 1,993,260 + -1.3 1,993,260 + -0.3 1,993,260 + +1.2 1,993,394 + -0.0 1,993,394 + +0.4 1,993,403 + -0.1 1,993,461 - +0.2 1,993,469 + +0.0 1,993,469 + -0.7 1,993,470 - -0.1 1,993,473 + +0.5 1,993,546 - +0.5 1,993,547 + +0.3 1,993,587 + flgK LU632_RS10440 0.12 -1.1 1,993,679 + flgK LU632_RS10440 0.18 -0.1 1,993,866 - flgK LU632_RS10440 0.29 -0.4 1,994,061 + flgK LU632_RS10440 0.41 -0.2 1,994,062 - flgK LU632_RS10440 0.41 +0.3 1,994,063 + flgK LU632_RS10440 0.41 -0.3 1,994,064 - flgK LU632_RS10440 0.41 -1.1 1,994,064 - flgK LU632_RS10440 0.41 -0.4 1,994,064 - flgK LU632_RS10440 0.41 +0.3 1,994,109 + flgK LU632_RS10440 0.44 -0.3
Or see this region's nucleotide sequence