Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05315

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05310 and LU632_RS05315 are separated by 938 nucleotidesLU632_RS05315 and LU632_RS05320 are separated by 110 nucleotides LU632_RS05310: LU632_RS05310 - hypothetical protein, at 1,025,312 to 1,026,292 _RS05310 LU632_RS05315: LU632_RS05315 - integrase domain-containing protein, at 1,027,231 to 1,028,142 _RS05315 LU632_RS05320: LU632_RS05320 - hypothetical protein, at 1,028,253 to 1,028,723 _RS05320 Position (kb) 1027 1028 1029Strain fitness (log2 ratio) -1 0 1 2at 1026.434 kb on - strandat 1026.434 kb on - strandat 1026.434 kb on - strandat 1026.565 kb on - strandat 1026.723 kb on + strandat 1026.724 kb on - strandat 1026.724 kb on - strandat 1026.724 kb on - strandat 1026.806 kb on + strandat 1026.809 kb on + strandat 1026.809 kb on + strandat 1026.809 kb on + strandat 1026.857 kb on - strandat 1026.869 kb on + strandat 1026.872 kb on + strandat 1026.872 kb on + strandat 1026.872 kb on + strandat 1026.873 kb on - strandat 1026.927 kb on + strandat 1026.947 kb on - strandat 1026.999 kb on + strandat 1027.000 kb on - strandat 1027.055 kb on + strandat 1027.055 kb on + strandat 1027.087 kb on - strandat 1027.220 kb on + strandat 1027.230 kb on + strandat 1027.231 kb on - strandat 1027.404 kb on + strand, within LU632_RS05315at 1027.405 kb on - strand, within LU632_RS05315at 1027.414 kb on + strand, within LU632_RS05315at 1027.427 kb on - strand, within LU632_RS05315at 1027.429 kb on - strand, within LU632_RS05315at 1027.429 kb on - strand, within LU632_RS05315at 1027.580 kb on + strand, within LU632_RS05315at 1027.687 kb on + strand, within LU632_RS05315at 1027.689 kb on + strand, within LU632_RS05315at 1027.704 kb on + strand, within LU632_RS05315at 1027.705 kb on - strand, within LU632_RS05315at 1027.797 kb on + strand, within LU632_RS05315at 1027.818 kb on + strand, within LU632_RS05315at 1027.827 kb on + strand, within LU632_RS05315at 1027.943 kb on - strand, within LU632_RS05315at 1027.997 kb on - strand, within LU632_RS05315at 1028.024 kb on - strand, within LU632_RS05315at 1028.167 kb on - strandat 1028.196 kb on + strandat 1028.201 kb on - strandat 1028.228 kb on - strandat 1028.229 kb on + strandat 1028.230 kb on - strandat 1028.409 kb on + strand, within LU632_RS05320at 1029.052 kb on - strandat 1029.068 kb on + strandat 1029.068 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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1,026,434 - -0.2
1,026,434 - +0.6
1,026,434 - -0.1
1,026,565 - +0.1
1,026,723 + +0.3
1,026,724 - -0.1
1,026,724 - +0.4
1,026,724 - +0.2
1,026,806 + +0.3
1,026,809 + -0.9
1,026,809 + +0.4
1,026,809 + +0.3
1,026,857 - +0.1
1,026,869 + -1.7
1,026,872 + -0.6
1,026,872 + -0.1
1,026,872 + -0.6
1,026,873 - +0.4
1,026,927 + +0.4
1,026,947 - +0.1
1,026,999 + +0.1
1,027,000 - +1.8
1,027,055 + +0.5
1,027,055 + -0.5
1,027,087 - -0.5
1,027,220 + -0.3
1,027,230 + -0.6
1,027,231 - +0.0
1,027,404 + LU632_RS05315 0.19 +1.7
1,027,405 - LU632_RS05315 0.19 +0.9
1,027,414 + LU632_RS05315 0.20 +0.3
1,027,427 - LU632_RS05315 0.21 -0.1
1,027,429 - LU632_RS05315 0.22 +0.9
1,027,429 - LU632_RS05315 0.22 -0.9
1,027,580 + LU632_RS05315 0.38 -0.8
1,027,687 + LU632_RS05315 0.50 +0.3
1,027,689 + LU632_RS05315 0.50 +0.3
1,027,704 + LU632_RS05315 0.52 -0.5
1,027,705 - LU632_RS05315 0.52 +0.1
1,027,797 + LU632_RS05315 0.62 +0.1
1,027,818 + LU632_RS05315 0.64 +0.3
1,027,827 + LU632_RS05315 0.65 +0.7
1,027,943 - LU632_RS05315 0.78 -0.4
1,027,997 - LU632_RS05315 0.84 -0.1
1,028,024 - LU632_RS05315 0.87 +0.1
1,028,167 - -0.4
1,028,196 + -0.3
1,028,201 - -0.1
1,028,228 - +0.2
1,028,229 + +0.1
1,028,230 - -0.5
1,028,409 + LU632_RS05320 0.33 -0.6
1,029,052 - +0.7
1,029,068 + -0.9
1,029,068 + -0.8

Or see this region's nucleotide sequence