Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05310 and LU632_RS05315 are separated by 938 nucleotides LU632_RS05315 and LU632_RS05320 are separated by 110 nucleotides
LU632_RS05310: LU632_RS05310 - hypothetical protein, at 1,025,312 to 1,026,292
_RS05310
LU632_RS05315: LU632_RS05315 - integrase domain-containing protein, at 1,027,231 to 1,028,142
_RS05315
LU632_RS05320: LU632_RS05320 - hypothetical protein, at 1,028,253 to 1,028,723
_RS05320
Position (kb)
1027
1028
1029 Strain fitness (log2 ratio)
-1
0
1
2 at 1026.434 kb on - strand at 1026.434 kb on - strand at 1026.434 kb on - strand at 1026.565 kb on - strand at 1026.723 kb on + strand at 1026.724 kb on - strand at 1026.724 kb on - strand at 1026.724 kb on - strand at 1026.806 kb on + strand at 1026.809 kb on + strand at 1026.809 kb on + strand at 1026.809 kb on + strand at 1026.857 kb on - strand at 1026.869 kb on + strand at 1026.872 kb on + strand at 1026.872 kb on + strand at 1026.872 kb on + strand at 1026.873 kb on - strand at 1026.927 kb on + strand at 1026.947 kb on - strand at 1026.999 kb on + strand at 1027.000 kb on - strand at 1027.055 kb on + strand at 1027.055 kb on + strand at 1027.087 kb on - strand at 1027.220 kb on + strand at 1027.230 kb on + strand at 1027.231 kb on - strand at 1027.404 kb on + strand, within LU632_RS05315 at 1027.405 kb on - strand, within LU632_RS05315 at 1027.414 kb on + strand, within LU632_RS05315 at 1027.427 kb on - strand, within LU632_RS05315 at 1027.429 kb on - strand, within LU632_RS05315 at 1027.429 kb on - strand, within LU632_RS05315 at 1027.580 kb on + strand, within LU632_RS05315 at 1027.687 kb on + strand, within LU632_RS05315 at 1027.689 kb on + strand, within LU632_RS05315 at 1027.704 kb on + strand, within LU632_RS05315 at 1027.705 kb on - strand, within LU632_RS05315 at 1027.797 kb on + strand, within LU632_RS05315 at 1027.818 kb on + strand, within LU632_RS05315 at 1027.827 kb on + strand, within LU632_RS05315 at 1027.943 kb on - strand, within LU632_RS05315 at 1027.997 kb on - strand, within LU632_RS05315 at 1028.024 kb on - strand, within LU632_RS05315 at 1028.167 kb on - strand at 1028.196 kb on + strand at 1028.201 kb on - strand at 1028.228 kb on - strand at 1028.229 kb on + strand at 1028.230 kb on - strand at 1028.409 kb on + strand, within LU632_RS05320 at 1029.052 kb on - strand at 1029.068 kb on + strand at 1029.068 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 1,026,434 - -0.2 1,026,434 - +0.6 1,026,434 - -0.1 1,026,565 - +0.1 1,026,723 + +0.3 1,026,724 - -0.1 1,026,724 - +0.4 1,026,724 - +0.2 1,026,806 + +0.3 1,026,809 + -0.9 1,026,809 + +0.4 1,026,809 + +0.3 1,026,857 - +0.1 1,026,869 + -1.7 1,026,872 + -0.6 1,026,872 + -0.1 1,026,872 + -0.6 1,026,873 - +0.4 1,026,927 + +0.4 1,026,947 - +0.1 1,026,999 + +0.1 1,027,000 - +1.8 1,027,055 + +0.5 1,027,055 + -0.5 1,027,087 - -0.5 1,027,220 + -0.3 1,027,230 + -0.6 1,027,231 - +0.0 1,027,404 + LU632_RS05315 0.19 +1.7 1,027,405 - LU632_RS05315 0.19 +0.9 1,027,414 + LU632_RS05315 0.20 +0.3 1,027,427 - LU632_RS05315 0.21 -0.1 1,027,429 - LU632_RS05315 0.22 +0.9 1,027,429 - LU632_RS05315 0.22 -0.9 1,027,580 + LU632_RS05315 0.38 -0.8 1,027,687 + LU632_RS05315 0.50 +0.3 1,027,689 + LU632_RS05315 0.50 +0.3 1,027,704 + LU632_RS05315 0.52 -0.5 1,027,705 - LU632_RS05315 0.52 +0.1 1,027,797 + LU632_RS05315 0.62 +0.1 1,027,818 + LU632_RS05315 0.64 +0.3 1,027,827 + LU632_RS05315 0.65 +0.7 1,027,943 - LU632_RS05315 0.78 -0.4 1,027,997 - LU632_RS05315 0.84 -0.1 1,028,024 - LU632_RS05315 0.87 +0.1 1,028,167 - -0.4 1,028,196 + -0.3 1,028,201 - -0.1 1,028,228 - +0.2 1,028,229 + +0.1 1,028,230 - -0.5 1,028,409 + LU632_RS05320 0.33 -0.6 1,029,052 - +0.7 1,029,068 + -0.9 1,029,068 + -0.8
Or see this region's nucleotide sequence